Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00322 * 2 1 4 4 H 1.48496 * 109.47351 * 239.99910 * 3 2 1 5 5 H 1.48510 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47212 * 119.99556 * 3 2 1 7 7 C 1.38818 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99707 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99802 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46058 * 204.99654 * 10 9 7 12 12 C 1.53189 * 109.31635 * 178.62708 * 11 10 9 13 13 N 1.46934 * 108.77348 * 54.63455 * 12 11 10 14 14 C 1.34779 * 120.62631 * 126.36551 * 13 12 11 15 15 O 1.21568 * 119.99432 * 187.05557 * 14 13 12 16 16 C 1.47741 * 119.99969 * 7.06360 * 14 13 12 17 17 C 1.41184 * 126.32950 * 187.13504 * 16 14 13 18 18 C 1.36680 * 105.44451 * 179.71302 * 17 16 14 19 19 C 1.48007 * 126.59125 * 180.22482 * 18 17 16 20 20 C 1.39488 * 120.13980 * 359.72619 * 19 18 17 21 21 C 1.37977 * 119.86486 * 179.76884 * 20 19 18 22 22 C 1.38351 * 120.13168 * 0.50633 * 21 20 19 23 23 C 1.38338 * 120.27611 * 359.74312 * 22 21 20 24 24 C 1.37979 * 120.13842 * 0.02562 * 23 22 21 25 25 N 1.36364 * 106.80918 * 0.26008 * 18 17 16 26 26 H 0.96996 * 125.00993 * 179.97438 * 25 18 17 27 27 N 1.28445 * 109.97788 * 0.02562 * 25 18 17 28 28 C 1.46917 * 118.73964 * 306.64543 * 13 12 11 29 29 C 1.52766 * 109.00851 * 53.30826 * 28 13 12 30 30 H 0.96997 * 120.00074 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00194 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46120 * 324.96866 * 10 9 7 33 33 H 1.09009 * 109.49729 * 58.67794 * 11 10 9 34 34 H 1.09002 * 109.52376 * 298.60068 * 11 10 9 35 35 H 1.09000 * 109.58574 * 294.85133 * 12 11 10 36 36 H 1.08998 * 109.70407 * 174.49255 * 12 11 10 37 37 H 1.08002 * 127.27525 * 359.97438 * 17 16 14 38 38 H 1.08000 * 120.06827 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.93969 * 180.25664 * 21 20 19 40 40 H 1.08004 * 119.85855 * 179.76758 * 22 21 20 41 41 H 1.07999 * 119.92944 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.07054 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.58604 * 173.13721 * 28 13 12 44 44 H 1.08996 * 109.59189 * 293.57230 * 28 13 12 45 45 H 1.08999 * 109.56756 * 185.55358 * 29 28 13 46 46 H 1.09001 * 109.35809 * 65.49869 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.1803 -4.7523 -0.6092 12 6 1.9617 -6.0696 -0.6390 13 7 2.4410 -6.3659 0.7180 14 6 2.1720 -7.5527 1.2973 15 8 2.4611 -7.7392 2.4633 16 6 1.5259 -8.6269 0.5153 17 6 1.0579 -9.8609 1.0168 18 6 0.5374 -10.5185 -0.0624 19 6 -0.0864 -11.8607 -0.0610 20 6 -0.1817 -12.5876 1.1257 21 6 -0.7686 -13.8363 1.1213 22 6 -1.2526 -14.3721 -0.0588 23 6 -1.1563 -13.6584 -1.2400 24 6 -0.5758 -12.4067 -1.2477 25 7 0.7041 -9.7005 -1.1407 26 1 0.4270 -9.9101 -2.0463 27 7 1.2830 -8.6120 -0.7804 28 6 3.2138 -5.3416 1.4336 29 6 2.4231 -4.0345 1.4380 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.9684 -3.5506 -0.5894 33 1 0.9014 -4.4717 -1.6250 34 1 0.2809 -4.8763 -0.0061 35 1 2.8120 -5.9748 -1.3143 36 1 1.3115 -6.8749 -0.9809 37 1 1.0985 -10.2096 2.0382 38 1 0.1994 -12.1720 2.0468 39 1 -0.8468 -14.3983 2.0402 40 1 -1.7078 -15.3515 -0.0578 41 1 -1.5363 -14.0818 -2.1579 42 1 -0.5016 -11.8503 -2.1704 43 1 3.3874 -5.6654 2.4598 44 1 4.1683 -5.1862 0.9308 45 1 3.0287 -3.2430 1.8794 46 1 1.5123 -4.1652 2.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996790030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 86.725705 kcal Electronic energy + Delta-G solvation = -28202.398495 eV Core-core repulsion = 24286.965522 eV Total energy + Delta-G solvation = -3915.432974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.92065 -39.76323 -39.33413 -37.25294 -34.47338 -33.21130 -32.48606 -31.86770 -31.32204 -30.65232 -29.38457 -29.00561 -25.38851 -24.07539 -23.78803 -23.02173 -22.60002 -21.98243 -21.18637 -20.05583 -19.04972 -18.46427 -17.31766 -16.99799 -16.55268 -16.07756 -15.72039 -15.47127 -15.20897 -14.78147 -14.69210 -14.14866 -13.97239 -13.80439 -13.66632 -13.56404 -13.39828 -13.33419 -13.20899 -12.88067 -12.39501 -12.02663 -11.89725 -11.54773 -11.49492 -10.96762 -10.86908 -10.78453 -10.64718 -10.39420 -10.31408 -10.22180 -10.04919 -9.70642 -9.64001 -9.50006 -9.47528 -8.86085 -8.56541 -8.39748 -6.93567 -5.74290 -3.03010 0.39108 0.88789 1.46050 2.05904 2.41923 3.12752 3.35132 3.43555 3.45545 3.49955 3.50855 3.99136 4.18024 4.33877 4.42911 4.60983 4.62360 4.76639 4.92667 4.98564 5.14325 5.28864 5.39512 5.40539 5.42850 5.45994 5.51629 5.60219 5.65388 5.79465 5.85299 5.89865 5.98615 6.00811 6.01975 6.02968 6.22840 6.31271 6.39796 6.41685 6.51423 6.61837 6.63243 6.75532 7.01352 7.12493 7.48296 7.65555 7.71518 8.26662 8.44244 9.55192 10.13413 10.48281 11.48335 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.001960 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.632949 B =14281.199590 C =14814.392461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.138 4.138 12 C 0.092 3.908 13 N -0.591 5.591 14 C 0.598 3.402 15 O -0.540 6.540 16 C 0.000 4.000 17 C -0.155 4.155 18 C 0.052 3.948 19 C -0.018 4.018 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.116 4.116 25 N -0.382 5.382 26 H 0.444 0.556 27 N -0.242 5.242 28 C 0.113 3.887 29 C -0.150 4.150 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.166 0.834 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -31.119 -3.164 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.032 4.032 13 N -0.322 5.322 14 C 0.384 3.616 15 O -0.416 6.416 16 C -0.159 4.159 17 C -0.182 4.182 18 C -0.073 4.073 19 C -0.020 4.020 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.135 4.135 25 N -0.096 5.096 26 H 0.289 0.711 27 N -0.078 5.078 28 C -0.009 4.009 29 C -0.191 4.191 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.184 0.816 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.800 -30.319 -3.464 30.527 hybrid contribution -0.170 0.505 0.085 0.539 sum -0.970 -29.814 -3.379 30.021 Atomic orbital electron populations 1.69655 1.05108 1.25715 1.57717 1.24748 0.95509 0.97681 1.03101 0.86274 0.78507 0.83615 0.77823 1.21319 1.21753 1.21279 1.19205 0.90962 0.84137 1.42640 0.91212 1.42426 1.05767 0.99725 1.88525 1.20197 0.94415 0.86038 0.92586 1.22201 0.99170 0.94345 1.01998 1.22447 0.99469 0.99306 0.81949 1.47998 1.53059 1.13971 1.17221 1.16956 0.78238 0.80964 0.85424 1.90769 1.54175 1.81151 1.15478 1.21922 1.06583 0.97314 0.90098 1.21694 1.03250 0.93586 0.99704 1.19866 1.05738 0.93567 0.88088 1.17919 0.99198 0.90372 0.94523 1.21197 0.98523 0.94414 0.97274 1.21147 0.97972 0.95385 0.98532 1.21296 0.99440 1.00065 0.92693 1.21055 0.99120 0.94407 0.98533 1.21077 0.99338 0.96345 0.96776 1.43730 1.43706 1.11433 1.10748 0.71056 1.73477 1.13565 1.05595 1.15133 1.21674 0.93839 0.87759 0.97676 1.22584 1.00242 0.94814 1.01441 0.93509 0.78321 0.93436 0.90653 0.92043 0.91613 0.86420 0.81646 0.84997 0.85318 0.85713 0.85565 0.86336 0.89543 0.91608 0.90628 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -18.22 5.12 -53.39 -0.27 -18.50 16 10 C 0.18 3.54 2.73 -67.89 -0.19 3.36 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.47 16 12 C 0.09 1.32 6.11 -3.71 -0.02 1.30 16 13 N -0.59 -9.25 2.98 -174.18 -0.52 -9.77 16 14 C 0.60 9.69 7.69 -12.38 -0.10 9.60 16 15 O -0.54 -10.01 16.35 5.31 0.09 -9.93 16 16 C 0.00 0.00 6.80 -82.86 -0.56 -0.56 16 17 C -0.15 -1.77 10.17 -39.03 -0.40 -2.17 16 18 C 0.05 0.48 6.98 -82.41 -0.58 -0.09 16 19 C -0.02 -0.14 5.87 -104.96 -0.62 -0.76 16 20 C -0.09 -0.66 9.58 -39.21 -0.38 -1.04 16 21 C -0.11 -0.64 10.03 -39.64 -0.40 -1.04 16 22 C -0.12 -0.61 10.04 -39.50 -0.40 -1.01 16 23 C -0.11 -0.60 10.03 -39.64 -0.40 -1.00 16 24 C -0.12 -0.71 9.71 -39.21 -0.38 -1.09 16 25 N -0.38 -3.32 6.80 33.31 0.23 -3.09 16 26 H 0.44 2.26 8.08 -190.46 -1.54 0.73 16 27 N -0.24 -2.84 8.68 33.37 0.29 -2.55 16 28 C 0.11 1.80 6.41 -3.93 -0.03 1.78 16 29 C -0.15 -2.78 5.64 -26.83 -0.15 -2.93 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.32 7.80 -40.82 -0.32 10.01 16 32 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.58 4.18 -69.78 -0.29 1.29 16 37 H 0.17 1.69 7.39 -52.49 -0.39 1.31 16 38 H 0.13 0.80 7.10 -52.49 -0.37 0.43 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.12 0.40 8.06 -52.48 -0.42 -0.02 16 41 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 42 H 0.12 0.46 7.20 -52.49 -0.38 0.08 16 43 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -34.21 378.62 -11.18 -45.39 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.42 Total: 8.32 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.97 Total: -5.41 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.45 Total: -61.57 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.21 -11.18 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996790030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.113 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds