Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47111 * 270.27831 * 3 2 1 5 5 H 1.48505 * 109.47159 * 30.27509 * 3 2 1 6 6 H 1.48504 * 109.47158 * 150.27544 * 3 2 1 7 7 C 1.38804 * 120.00005 * 180.27704 * 2 1 3 8 8 H 1.08003 * 119.99838 * 359.72404 * 7 2 1 9 9 N 1.36941 * 120.00225 * 179.72468 * 7 2 1 10 10 C 1.46494 * 120.00127 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.49721 * 34.93274 * 10 9 7 12 12 C 1.53035 * 109.49873 * 154.99947 * 10 9 7 13 13 C 1.53047 * 109.54062 * 181.31514 * 12 10 9 14 14 C 1.53184 * 109.31417 * 298.63558 * 13 12 10 15 15 N 1.46934 * 108.77661 * 54.63267 * 14 13 12 16 16 C 1.34772 * 120.63259 * 126.41144 * 15 14 13 17 17 O 1.21622 * 119.99698 * 354.50705 * 16 15 14 18 18 C 1.47288 * 119.99970 * 174.50174 * 16 15 14 19 19 C 1.37957 * 126.81088 * 318.87248 * 18 16 15 20 20 N 1.34158 * 107.89005 * 179.97438 * 19 18 16 21 21 H 0.96996 * 125.16285 * 180.02562 * 20 19 18 22 22 N 1.39776 * 109.67192 * 0.02562 * 20 19 18 23 23 C 1.31368 * 109.07787 * 359.72595 * 22 20 19 24 24 C 1.48288 * 126.50992 * 180.24009 * 23 22 20 25 25 C 1.39384 * 120.12094 * 144.91810 * 24 23 22 26 26 C 1.38010 * 119.86832 * 179.78949 * 25 24 23 27 27 C 1.38331 * 120.12728 * 0.49045 * 26 25 24 28 28 C 1.38324 * 120.24966 * 359.74627 * 27 26 25 29 29 C 1.38006 * 120.13171 * 0.02562 * 28 27 26 30 30 C 1.46923 * 118.73550 * 306.39460 * 15 14 13 31 31 H 0.97000 * 119.99457 * 359.71919 * 1 2 3 32 32 H 0.96992 * 119.99668 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46213 * 301.33514 * 12 10 9 34 34 H 1.09000 * 109.46122 * 61.30780 * 12 10 9 35 35 H 1.09003 * 109.49556 * 58.58590 * 13 12 10 36 36 H 1.08998 * 109.49944 * 178.67891 * 13 12 10 37 37 H 1.08994 * 109.59018 * 174.42009 * 14 13 12 38 38 H 1.08996 * 109.58847 * 294.84873 * 14 13 12 39 39 H 1.07996 * 126.05377 * 359.96486 * 19 18 16 40 40 H 1.07999 * 120.06684 * 0.02849 * 25 24 23 41 41 H 1.08000 * 119.93777 * 180.23171 * 26 25 24 42 42 H 1.08003 * 119.87433 * 179.71700 * 27 26 25 43 43 H 1.08008 * 119.93171 * 179.97438 * 28 27 26 44 44 H 1.07997 * 120.06779 * 179.97438 * 29 28 27 45 45 H 1.09000 * 109.58802 * 293.81707 * 30 15 14 46 46 H 1.09004 * 109.58466 * 173.39407 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5507 1.4385 0.6942 7 6 2.0102 -1.2021 -0.0058 8 1 1.4702 -2.1374 -0.0058 9 7 3.3796 -1.2021 -0.0115 10 6 4.1121 -2.4708 -0.0171 11 1 3.5620 -3.2059 -0.6047 12 6 5.4972 -2.2582 -0.6321 13 6 6.2510 -3.5897 -0.6684 14 6 6.4314 -4.1089 0.7614 15 7 5.1143 -4.1786 1.4090 16 6 4.6905 -5.3223 1.9822 17 8 5.3548 -6.3360 1.8803 18 6 3.4229 -5.3447 2.7319 19 6 2.9572 -4.3765 3.5973 20 7 1.7680 -4.7818 4.0678 21 1 1.2183 -4.2883 4.6963 22 7 1.4414 -6.0232 3.5146 23 6 2.4034 -6.3977 2.7022 24 6 2.4507 -7.6495 1.9086 25 6 3.0300 -7.6525 0.6409 26 6 3.0751 -8.8215 -0.0914 27 6 2.5377 -9.9862 0.4263 28 6 1.9571 -9.9879 1.6818 29 6 1.9105 -8.8260 2.4250 30 6 4.2683 -2.9774 1.4202 31 1 -0.4849 0.8401 0.0041 32 1 3.8646 -0.3621 -0.0111 33 1 5.3891 -1.8744 -1.6465 34 1 6.0557 -1.5413 -0.0302 35 1 5.6810 -4.3147 -1.2495 36 1 7.2283 -3.4421 -1.1279 37 1 6.8789 -5.1025 0.7357 38 1 7.0768 -3.4296 1.3182 39 1 3.4609 -3.4555 3.8512 40 1 3.4463 -6.7428 0.2340 41 1 3.5271 -8.8259 -1.0723 42 1 2.5711 -10.8977 -0.1522 43 1 1.5387 -10.9002 2.0808 44 1 1.4566 -8.8284 3.4050 45 1 4.7373 -2.2057 2.0306 46 1 3.2885 -3.2244 1.8291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999835065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 82.178648 kcal Electronic energy + Delta-G solvation = -29862.761087 eV Core-core repulsion = 25947.130938 eV Total energy + Delta-G solvation = -3915.630149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21701 -39.47086 -38.80470 -37.24919 -34.43192 -32.85148 -32.68093 -31.60355 -30.91840 -30.03119 -29.63665 -28.67195 -25.42987 -23.91488 -23.48370 -22.90323 -22.25372 -21.41334 -20.34685 -20.05473 -19.21820 -17.73290 -17.47541 -16.74610 -16.55892 -15.58845 -15.38009 -15.23657 -14.83336 -14.59949 -14.37676 -14.26914 -14.11817 -13.69128 -13.55856 -13.34638 -13.09422 -12.95980 -12.61654 -12.57779 -12.55610 -12.51965 -11.69442 -11.29922 -11.27598 -11.16826 -10.99229 -10.84997 -10.74219 -10.57958 -10.36015 -10.14292 -9.92928 -9.70068 -9.67460 -9.17800 -8.85715 -8.76325 -8.39657 -8.30665 -7.38690 -5.87830 -3.25543 1.05431 1.49785 1.67965 2.39081 2.70403 3.12962 3.27521 3.31286 3.37317 3.44804 3.94079 4.31452 4.48129 4.65929 4.83922 4.97935 5.00743 5.10086 5.12509 5.13114 5.25034 5.28548 5.33218 5.44513 5.46897 5.49929 5.60391 5.66022 5.67062 5.81377 5.91563 5.92685 5.99681 6.08559 6.10473 6.18165 6.22228 6.25693 6.53128 6.54915 6.56972 6.60962 6.70340 6.82943 7.00572 7.12671 7.50936 7.66323 7.88098 8.30556 8.45271 9.08355 9.80341 9.99333 11.29901 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003754 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.756647 B = 7456.856200 C = 8360.276107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.743 5.743 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.129 4.129 13 C -0.129 4.129 14 C 0.114 3.886 15 N -0.605 5.605 16 C 0.596 3.404 17 O -0.544 6.544 18 C -0.276 4.276 19 C 0.114 3.886 20 N -0.460 5.460 21 H 0.445 0.555 22 N -0.280 5.280 23 C 0.163 3.837 24 C -0.012 4.012 25 C -0.067 4.067 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.128 4.128 29 C -0.090 4.090 30 C 0.081 3.919 31 H 0.260 0.740 32 H 0.363 0.637 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.189 0.811 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.061 0.939 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -12.989 5.070 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.385 5.385 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.008 4.008 15 N -0.338 5.338 16 C 0.384 3.616 17 O -0.422 6.422 18 C -0.291 4.291 19 C -0.036 4.036 20 N -0.165 5.165 21 H 0.290 0.710 22 N -0.101 5.101 23 C -0.005 4.005 24 C -0.014 4.014 25 C -0.087 4.087 26 C -0.139 4.139 27 C -0.130 4.130 28 C -0.146 4.146 29 C -0.109 4.109 30 C -0.044 4.044 31 H 0.070 0.930 32 H 0.196 0.804 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.205 0.795 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.080 0.920 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.754 -13.835 5.523 17.278 hybrid contribution 0.911 2.189 0.110 2.374 sum 9.665 -11.645 5.634 16.148 Atomic orbital electron populations 1.69709 1.05141 1.25929 1.56920 1.24673 0.95179 0.97180 1.01698 0.86584 0.79154 0.85008 0.77925 1.20991 1.21753 1.20276 1.19060 0.80405 0.94719 1.43742 0.89226 1.42741 1.04072 1.01766 1.89948 1.20451 0.91208 0.89435 0.92706 0.92188 1.21865 0.96563 0.96678 1.01675 1.21866 1.00690 0.97764 0.96436 1.21557 0.84047 1.02429 0.92811 1.48087 1.18215 1.11720 1.55786 1.17210 0.83585 0.82730 0.78063 1.90756 1.56924 1.32743 1.61744 1.21132 1.00134 0.97690 1.10102 1.23044 0.87299 0.98177 0.95077 1.45903 1.16423 1.16454 1.37701 0.71028 1.77283 1.21959 0.96501 1.14323 1.21713 0.90649 0.93495 0.94655 1.17651 1.00672 0.89616 0.93486 1.21107 0.96031 0.98650 0.92877 1.21033 1.00258 0.92496 1.00128 1.21207 0.97997 0.98070 0.95766 1.21008 1.00760 0.97831 0.95009 1.21152 0.98070 0.91731 0.99958 1.22966 0.94850 0.85195 1.01428 0.92958 0.80437 0.91392 0.92195 0.91422 0.91017 0.89176 0.91846 0.79451 0.86016 0.85750 0.86071 0.85892 0.85737 0.92027 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.97 55.49 0.78 -27.25 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 20.85 27.74 -169.99 -4.71 16.13 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 7 C -0.25 -6.57 10.41 -15.06 -0.16 -6.73 16 8 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 9 N -0.74 -16.01 4.93 -53.31 -0.26 -16.27 16 10 C 0.17 3.03 2.92 -67.82 -0.20 2.83 16 11 H 0.06 1.18 8.08 -51.92 -0.42 0.76 16 12 C -0.13 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 14 C 0.11 1.43 6.44 -3.71 -0.02 1.40 16 15 N -0.60 -8.81 2.97 -174.09 -0.52 -9.32 16 16 C 0.60 9.65 6.19 -12.58 -0.08 9.57 16 17 O -0.54 -9.93 15.21 5.26 0.08 -9.85 16 18 C -0.28 -4.33 5.32 -102.95 -0.55 -4.88 16 19 C 0.11 1.49 9.64 -16.64 -0.16 1.33 16 20 N -0.46 -5.86 7.20 30.81 0.22 -5.64 16 21 H 0.44 4.13 8.96 -182.85 -1.64 2.49 16 22 N -0.28 -4.37 12.63 34.57 0.44 -3.93 16 23 C 0.16 2.67 6.94 -80.56 -0.56 2.11 16 24 C -0.01 -0.19 5.76 -104.91 -0.60 -0.79 16 25 C -0.07 -1.01 8.37 -39.24 -0.33 -1.34 16 26 C -0.12 -1.53 10.03 -39.63 -0.40 -1.93 16 27 C -0.11 -1.25 10.04 -39.52 -0.40 -1.64 16 28 C -0.13 -1.46 10.03 -39.64 -0.40 -1.85 16 29 C -0.09 -1.21 9.76 -39.24 -0.38 -1.59 16 30 C 0.08 1.26 5.10 -3.71 -0.02 1.24 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.36 7.67 5.66 -40.82 -0.23 7.44 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.17 6.99 -51.93 -0.36 0.80 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.19 1.91 7.40 -52.49 -0.39 1.53 16 40 H 0.12 1.96 6.75 -52.49 -0.35 1.60 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.53 4.84 -51.93 -0.25 1.27 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -33.59 375.42 -10.44 -44.03 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.47 Total: 12.21 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -4.65 Total: -5.77 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: 0.65 Total: -62.42 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.59 -10.44 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999835065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.208 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds