Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48502 * 109.47111 * 270.27831 * 3 2 1 5 5 H 1.48505 * 109.47159 * 30.27509 * 3 2 1 6 6 H 1.48504 * 109.47158 * 150.27544 * 3 2 1 7 7 C 1.38804 * 120.00005 * 180.27704 * 2 1 3 8 8 H 1.08003 * 119.99838 * 359.72404 * 7 2 1 9 9 N 1.36941 * 120.00225 * 179.72468 * 7 2 1 10 10 C 1.46494 * 120.00127 * 179.97438 * 9 7 2 11 11 H 1.09009 * 109.49721 * 34.93274 * 10 9 7 12 12 C 1.53035 * 109.49873 * 154.99947 * 10 9 7 13 13 C 1.53047 * 109.54062 * 181.31514 * 12 10 9 14 14 C 1.53184 * 109.31417 * 298.63558 * 13 12 10 15 15 N 1.46934 * 108.77661 * 54.63267 * 14 13 12 16 16 C 1.34772 * 120.63259 * 126.41144 * 15 14 13 17 17 O 1.21622 * 119.99698 * 354.50705 * 16 15 14 18 18 C 1.47288 * 119.99970 * 174.50174 * 16 15 14 19 19 C 1.37957 * 126.81088 * 318.87248 * 18 16 15 20 20 N 1.34158 * 107.89005 * 179.97438 * 19 18 16 21 21 H 0.96996 * 125.16285 * 180.02562 * 20 19 18 22 22 N 1.39776 * 109.67192 * 0.02562 * 20 19 18 23 23 C 1.31368 * 109.07787 * 359.72595 * 22 20 19 24 24 C 1.48288 * 126.50992 * 180.24009 * 23 22 20 25 25 C 1.39384 * 120.12094 * 144.91810 * 24 23 22 26 26 C 1.38010 * 119.86832 * 179.78949 * 25 24 23 27 27 C 1.38331 * 120.12728 * 0.49045 * 26 25 24 28 28 C 1.38324 * 120.24966 * 359.74627 * 27 26 25 29 29 C 1.38006 * 120.13171 * 0.02562 * 28 27 26 30 30 C 1.46923 * 118.73550 * 306.39460 * 15 14 13 31 31 H 0.97000 * 119.99457 * 359.71919 * 1 2 3 32 32 H 0.96992 * 119.99668 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46213 * 301.33514 * 12 10 9 34 34 H 1.09000 * 109.46122 * 61.30780 * 12 10 9 35 35 H 1.09003 * 109.49556 * 58.58590 * 13 12 10 36 36 H 1.08998 * 109.49944 * 178.67891 * 13 12 10 37 37 H 1.08994 * 109.59018 * 174.42009 * 14 13 12 38 38 H 1.08996 * 109.58847 * 294.84873 * 14 13 12 39 39 H 1.07996 * 126.05377 * 359.96486 * 19 18 16 40 40 H 1.07999 * 120.06684 * 0.02849 * 25 24 23 41 41 H 1.08000 * 119.93777 * 180.23171 * 26 25 24 42 42 H 1.08003 * 119.87433 * 179.71700 * 27 26 25 43 43 H 1.08008 * 119.93171 * 179.97438 * 28 27 26 44 44 H 1.07997 * 120.06779 * 179.97438 * 29 28 27 45 45 H 1.09000 * 109.58802 * 293.81707 * 30 15 14 46 46 H 1.09004 * 109.58466 * 173.39407 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5507 1.4385 0.6942 7 6 2.0102 -1.2021 -0.0058 8 1 1.4702 -2.1374 -0.0058 9 7 3.3796 -1.2021 -0.0115 10 6 4.1121 -2.4708 -0.0171 11 1 3.5620 -3.2059 -0.6047 12 6 5.4972 -2.2582 -0.6321 13 6 6.2510 -3.5897 -0.6684 14 6 6.4314 -4.1089 0.7614 15 7 5.1143 -4.1786 1.4090 16 6 4.6905 -5.3223 1.9822 17 8 5.3548 -6.3360 1.8803 18 6 3.4229 -5.3447 2.7319 19 6 2.9572 -4.3765 3.5973 20 7 1.7680 -4.7818 4.0678 21 1 1.2183 -4.2883 4.6963 22 7 1.4414 -6.0232 3.5146 23 6 2.4034 -6.3977 2.7022 24 6 2.4507 -7.6495 1.9086 25 6 3.0300 -7.6525 0.6409 26 6 3.0751 -8.8215 -0.0914 27 6 2.5377 -9.9862 0.4263 28 6 1.9571 -9.9879 1.6818 29 6 1.9105 -8.8260 2.4250 30 6 4.2683 -2.9774 1.4202 31 1 -0.4849 0.8401 0.0041 32 1 3.8646 -0.3621 -0.0111 33 1 5.3891 -1.8744 -1.6465 34 1 6.0557 -1.5413 -0.0302 35 1 5.6810 -4.3147 -1.2495 36 1 7.2283 -3.4421 -1.1279 37 1 6.8789 -5.1025 0.7357 38 1 7.0768 -3.4296 1.3182 39 1 3.4609 -3.4555 3.8512 40 1 3.4463 -6.7428 0.2340 41 1 3.5271 -8.8259 -1.0723 42 1 2.5711 -10.8977 -0.1522 43 1 1.5387 -10.9002 2.0808 44 1 1.4566 -8.8284 3.4050 45 1 4.7373 -2.2057 2.0306 46 1 3.2885 -3.2244 1.8291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999835065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = 60.216132 kcal Electronic energy + Delta-G solvation = -29863.713453 eV Core-core repulsion = 25947.130938 eV Total energy + Delta-G solvation = -3916.582515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34920 -40.68751 -39.79915 -38.60098 -36.08814 -34.05189 -33.85918 -33.35036 -31.93730 -31.22120 -30.70945 -30.17889 -26.62041 -25.63802 -24.55512 -24.01979 -23.37986 -22.75490 -21.67919 -21.16163 -20.37113 -19.57335 -18.71553 -17.84083 -17.67988 -16.76033 -16.70733 -16.41443 -16.25809 -15.95816 -15.56569 -15.47591 -15.42946 -15.00926 -14.72487 -14.62196 -14.35302 -14.16677 -14.03213 -13.86077 -13.72303 -13.61165 -13.27347 -12.96977 -12.50569 -12.33121 -12.19440 -12.13140 -11.92866 -11.89548 -11.84168 -11.65206 -11.45276 -11.13925 -11.03854 -10.90221 -9.92618 -9.86725 -9.74942 -9.39973 -9.18163 -8.01045 -5.36550 0.00017 0.49014 0.57295 1.23947 1.40606 1.44696 1.51832 1.67633 1.93826 2.27550 2.50077 2.91513 3.22056 3.30645 3.50787 3.60632 3.92632 3.94936 4.01436 4.07718 4.08898 4.19836 4.20401 4.26509 4.33696 4.37962 4.41534 4.54543 4.64675 4.67508 4.73373 4.87610 4.90866 4.97633 5.02773 5.10601 5.13089 5.16253 5.36304 5.46020 5.52879 5.56109 5.58231 5.63407 5.77210 6.04546 6.16716 6.21806 6.36346 6.45627 7.08418 7.22342 7.81940 8.03809 9.20260 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.003754 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.756647 B = 7456.856200 C = 8360.276107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.059 4.059 3 Si 0.955 3.045 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.241 1.241 7 C -0.229 4.229 8 H 0.047 0.953 9 N -0.742 5.742 10 C 0.168 3.832 11 H 0.027 0.973 12 C -0.121 4.121 13 C -0.120 4.120 14 C 0.110 3.890 15 N -0.600 5.600 16 C 0.597 3.403 17 O -0.570 6.570 18 C -0.308 4.308 19 C 0.129 3.871 20 N -0.450 5.450 21 H 0.459 0.541 22 N -0.302 5.302 23 C 0.146 3.854 24 C -0.041 4.041 25 C -0.091 4.091 26 C -0.128 4.128 27 C -0.106 4.106 28 C -0.123 4.123 29 C -0.102 4.102 30 C 0.093 3.907 31 H 0.257 0.743 32 H 0.370 0.630 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.219 0.781 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 -12.834 5.355 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.250 4.250 3 Si 0.782 3.218 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.165 1.165 7 C -0.360 4.360 8 H 0.066 0.934 9 N -0.385 5.385 10 C 0.058 3.942 11 H 0.046 0.954 12 C -0.160 4.160 13 C -0.158 4.158 14 C -0.011 4.011 15 N -0.332 5.332 16 C 0.386 3.614 17 O -0.450 6.450 18 C -0.323 4.323 19 C -0.023 4.023 20 N -0.157 5.157 21 H 0.307 0.693 22 N -0.124 5.124 23 C -0.021 4.021 24 C -0.043 4.043 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.124 4.124 28 C -0.140 4.140 29 C -0.121 4.121 30 C -0.032 4.032 31 H 0.066 0.934 32 H 0.204 0.796 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.236 0.764 40 H 0.117 0.883 41 H 0.160 0.840 42 H 0.176 0.824 43 H 0.175 0.825 44 H 0.147 0.853 45 H 0.102 0.898 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.419 -13.701 5.819 18.761 hybrid contribution 0.058 1.997 -0.018 1.998 sum 11.477 -11.704 5.801 17.388 Atomic orbital electron populations 1.69908 1.07398 1.26669 1.59490 1.25484 0.95947 1.01238 1.02379 0.85422 0.79026 0.79385 0.77968 1.20970 1.22712 1.16460 1.18898 0.82537 0.92982 1.41563 0.93446 1.42631 1.02291 1.03555 1.90030 1.20604 0.92599 0.87089 0.93868 0.95437 1.21795 0.94298 0.98353 1.01512 1.21824 1.01851 0.96017 0.96128 1.21775 0.83109 1.02955 0.93279 1.48063 1.18779 1.10864 1.55521 1.17273 0.83481 0.82665 0.77968 1.90724 1.57746 1.33560 1.62948 1.21311 1.00556 0.98761 1.11703 1.23470 0.86929 0.98295 0.93568 1.45958 1.16544 1.15788 1.37396 0.69318 1.77202 1.22332 0.97825 1.15024 1.22051 0.91002 0.94197 0.94894 1.17903 1.02108 0.90317 0.93949 1.21072 0.97490 0.98940 0.93544 1.21333 1.00238 0.92270 1.00737 1.21633 0.96309 0.98656 0.95799 1.21434 0.99646 0.98169 0.94795 1.21346 0.98258 0.91946 1.00570 1.22658 0.94696 0.85955 0.99906 0.93429 0.79566 0.91596 0.90062 0.92958 0.87611 0.89670 0.89205 0.76418 0.88331 0.83975 0.82425 0.82527 0.85327 0.89766 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.24 13.97 21.65 0.30 -60.93 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 3 Si 0.95 42.50 27.74 68.60 1.90 44.40 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.24 -9.18 6.52 99.48 0.65 -8.53 16 7 C -0.23 -12.28 10.41 84.03 0.88 -11.41 16 8 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.74 -31.19 4.93 -322.58 -1.59 -32.78 16 10 C 0.17 5.78 2.92 45.07 0.13 5.91 16 11 H 0.03 1.12 8.08 -2.38 -0.02 1.10 16 12 C -0.12 -3.10 5.35 30.62 0.16 -2.94 16 13 C -0.12 -2.56 6.08 30.67 0.19 -2.38 16 14 C 0.11 2.52 6.44 86.36 0.56 3.07 16 15 N -0.60 -17.01 2.97 -822.95 -2.45 -19.46 16 16 C 0.60 19.72 6.19 86.62 0.54 20.26 16 17 O -0.57 -21.38 15.21 -4.10 -0.06 -21.44 16 18 C -0.31 -10.02 5.32 -18.78 -0.10 -10.12 16 19 C 0.13 3.36 9.64 84.27 0.81 4.17 16 20 N -0.45 -11.65 7.20 -56.43 -0.41 -12.05 16 21 H 0.46 8.48 8.96 -213.53 -1.91 6.57 16 22 N -0.30 -9.85 12.63 -44.53 -0.56 -10.41 16 23 C 0.15 5.06 6.94 44.07 0.31 5.36 16 24 C -0.04 -1.34 5.76 -20.05 -0.12 -1.45 16 25 C -0.09 -2.91 8.37 22.49 0.19 -2.72 16 26 C -0.13 -3.23 10.03 22.24 0.22 -3.00 16 27 C -0.11 -2.16 10.04 22.31 0.22 -1.94 16 28 C -0.12 -2.60 10.03 22.23 0.22 -2.38 16 29 C -0.10 -2.78 9.76 22.49 0.22 -2.56 16 30 C 0.09 2.80 5.10 86.36 0.44 3.24 16 31 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.37 14.57 5.66 -92.71 -0.52 14.05 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.09 6.99 -2.39 -0.02 2.07 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.22 4.10 7.40 -2.91 -0.02 4.08 16 40 H 0.10 3.50 6.75 -2.91 -0.02 3.48 16 41 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.48 4.84 -2.38 -0.01 2.47 16 Total: -1.00 -77.11 375.42 1.01 -76.10 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.47 Total: 38.28 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.34 Total: -1.71 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -4.70 Total: -135.64 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.90 Total: 44.40 kcal Total: -77.11 1.01 -76.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999835065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.320 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds