Wall clock time and date at job start Sat Apr 11 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47066 * 272.92098 * 3 2 1 5 5 H 1.48501 * 109.46599 * 32.91784 * 3 2 1 6 6 H 1.48493 * 109.47142 * 152.91572 * 3 2 1 7 7 C 1.38810 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99667 * 339.36500 * 7 2 1 9 9 N 1.36939 * 120.00108 * 159.37289 * 7 2 1 10 10 C 1.46924 * 120.63092 * 152.59641 * 9 7 2 11 11 C 1.53191 * 108.77424 * 126.39059 * 10 9 7 12 12 C 1.53042 * 109.31117 * 54.63359 * 11 10 9 13 13 C 1.53041 * 109.54086 * 298.63120 * 12 11 10 14 14 H 1.08997 * 109.49737 * 301.38704 * 13 12 11 15 15 N 1.46501 * 109.50054 * 181.31766 * 13 12 11 16 16 C 1.34773 * 120.00077 * 155.06744 * 15 13 12 17 17 O 1.21588 * 119.99611 * 0.02562 * 16 15 13 18 18 C 1.47524 * 120.00056 * 179.97438 * 16 15 13 19 19 C 1.39591 * 120.21691 * 0.25798 * 18 16 15 20 20 C 1.37860 * 119.96530 * 180.29674 * 19 18 16 21 21 C 1.38574 * 120.41443 * 359.69578 * 20 19 18 22 22 C 1.37970 * 120.44256 * 0.03035 * 21 20 19 23 23 C 1.39247 * 120.02332 * 359.97438 * 22 21 20 24 24 C 1.48175 * 120.20540 * 179.97438 * 23 22 21 25 25 C 1.40982 * 126.25020 * 129.69201 * 24 23 22 26 26 N 1.30621 * 108.06032 * 179.85379 * 25 24 23 27 27 N 1.39992 * 108.58291 * 0.40931 * 26 25 24 28 28 H 0.97001 * 125.87169 * 179.73074 * 27 26 25 29 29 C 1.34709 * 108.26461 * 359.73835 * 27 26 25 30 30 C 1.46936 * 120.60080 * 332.57706 * 9 7 2 31 31 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58727 * 6.60437 * 10 9 7 33 33 H 1.09000 * 109.70065 * 246.24237 * 10 9 7 34 34 H 1.08998 * 109.49795 * 294.68533 * 11 10 9 35 35 H 1.09002 * 109.52699 * 174.60106 * 11 10 9 36 36 H 1.09002 * 109.45678 * 178.61649 * 12 11 10 37 37 H 1.08993 * 109.46001 * 58.65854 * 12 11 10 38 38 H 0.97000 * 119.99546 * 335.06990 * 15 13 12 39 39 H 1.07996 * 120.02265 * 0.02562 * 19 18 16 40 40 H 1.08004 * 119.79609 * 179.71855 * 20 19 18 41 41 H 1.07998 * 119.77849 * 180.02562 * 21 20 19 42 42 H 1.08003 * 119.98798 * 179.97438 * 22 21 20 43 43 H 1.07998 * 125.96351 * 0.02562 * 25 24 23 44 44 H 1.08004 * 126.19851 * 180.02562 * 29 27 26 45 45 H 1.08994 * 109.56377 * 113.80876 * 30 9 7 46 46 H 1.09003 * 109.61542 * 353.37818 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4359 2.0822 -1.3983 5 1 1.4797 2.6340 0.7609 6 1 3.5771 1.4233 0.6374 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3138 -1.2399 -0.4183 10 6 4.2351 -2.2628 0.0951 11 6 4.8754 -2.9899 -1.0915 12 6 5.5293 -1.9644 -2.0205 13 6 4.4626 -1.0079 -2.5586 14 1 3.7004 -1.5759 -3.0919 15 7 5.0844 -0.0461 -3.4723 16 6 4.3458 0.5472 -4.4309 17 8 3.1634 0.2845 -4.5371 18 6 4.9718 1.5161 -5.3505 19 6 6.3299 1.8177 -5.2353 20 6 6.9081 2.7285 -6.0935 21 6 6.1508 3.3445 -7.0771 22 6 4.8084 3.0547 -7.2097 23 6 4.2055 2.1377 -6.3527 24 6 2.7640 1.8240 -6.4912 25 6 2.1947 0.5365 -6.5683 26 7 0.9005 0.6721 -6.6814 27 7 0.5942 2.0381 -6.6907 28 1 -0.2937 2.4210 -6.7682 29 6 1.7443 2.7295 -6.5736 30 6 3.8170 -0.2582 -1.3890 31 1 -0.4851 0.8400 -0.0004 32 1 3.6840 -2.9770 0.7070 33 1 5.0118 -1.7896 0.6959 34 1 4.1089 -3.5393 -1.6382 35 1 5.6317 -3.6854 -0.7276 36 1 6.0069 -2.4811 -2.8530 37 1 6.2784 -1.3986 -1.4667 38 1 6.0276 0.1636 -3.3872 39 1 6.9263 1.3411 -4.4715 40 1 7.9581 2.9632 -5.9991 41 1 6.6144 4.0561 -7.7441 42 1 4.2249 3.5394 -7.9786 43 1 2.7342 -0.3985 -6.5363 44 1 1.8425 3.8048 -6.5488 45 1 4.5589 0.3809 -0.9105 46 1 2.9903 0.3498 -1.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007475397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:58 Heat of formation + Delta-G solvation = 102.851707 kcal Electronic energy + Delta-G solvation = -30139.213508 eV Core-core repulsion = 26224.479811 eV Total energy + Delta-G solvation = -3914.733698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07870 -39.87204 -38.50967 -37.31690 -34.38577 -32.80425 -32.35520 -31.47093 -31.03314 -30.64517 -29.00592 -28.33795 -25.25669 -24.13279 -23.15131 -22.61810 -21.73281 -21.58811 -20.17218 -20.02981 -19.46341 -18.14767 -17.38119 -16.79445 -15.96863 -15.73692 -15.37822 -14.86557 -14.82796 -14.69139 -14.18906 -14.08756 -13.98513 -13.70337 -13.50845 -13.31204 -13.18381 -12.95350 -12.73797 -12.37883 -12.23099 -12.13006 -11.89511 -11.55388 -11.38698 -11.05026 -10.73004 -10.58487 -10.50462 -10.21550 -10.16557 -9.86625 -9.72299 -9.42490 -9.27624 -9.09084 -9.00703 -8.74966 -8.43240 -7.90760 -6.92179 -5.88799 -3.24746 0.78040 1.13805 2.17229 2.91181 3.12319 3.26379 3.40826 3.44859 3.51039 3.53843 3.89198 4.60125 4.68270 4.68668 4.73213 4.87791 4.99627 5.07075 5.16681 5.24632 5.28871 5.29581 5.39444 5.52129 5.53178 5.65851 5.76632 5.85976 5.89882 5.98325 6.01674 6.07574 6.16671 6.23461 6.27792 6.28925 6.41803 6.47834 6.61792 6.66449 6.69490 6.74271 6.84748 6.87870 6.99033 7.46047 7.80116 7.95333 8.01916 8.38967 8.56448 8.99277 9.78472 10.14250 11.26973 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004543 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.111674 B = 6161.638106 C = 7386.297602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.128 3.872 14 H 0.093 0.907 15 N -0.722 5.722 16 C 0.546 3.454 17 O -0.507 6.507 18 C -0.128 4.128 19 C -0.084 4.084 20 C -0.136 4.136 21 C -0.095 4.095 22 C -0.125 4.125 23 C 0.061 3.939 24 C -0.211 4.211 25 C 0.138 3.862 26 N -0.305 5.305 27 N -0.480 5.480 28 H 0.437 0.563 29 C 0.073 3.927 30 C 0.121 3.879 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.391 0.609 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.177 0.823 44 H 0.172 0.828 45 H 0.022 0.978 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 6.048 -15.524 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.233 1.233 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.104 0.896 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.022 3.978 14 H 0.111 0.889 15 N -0.374 5.374 16 C 0.333 3.667 17 O -0.382 6.382 18 C -0.131 4.131 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.143 4.143 23 C 0.059 3.941 24 C -0.223 4.223 25 C -0.050 4.050 26 N -0.127 5.127 27 N -0.186 5.186 28 H 0.280 0.720 29 C -0.075 4.075 30 C -0.006 4.006 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.194 0.806 44 H 0.189 0.811 45 H 0.040 0.960 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.153 5.287 -15.640 21.109 hybrid contribution 1.360 1.907 0.313 2.363 sum 14.513 7.193 -15.327 22.300 Atomic orbital electron populations 1.69835 1.05707 1.26441 1.52637 1.25236 0.95150 0.97473 0.99104 0.86974 0.79926 0.85055 0.77002 1.21492 1.23261 1.19732 1.18886 0.85029 0.94749 1.40460 0.89586 1.44285 1.08795 1.33610 1.45798 1.20975 0.92446 0.91347 0.93278 1.21998 0.99620 0.97360 0.98210 1.21682 0.97423 0.97362 0.98978 1.21743 0.95342 0.89866 0.90809 0.88939 1.46101 1.12808 1.45135 1.33316 1.18212 0.86708 0.81025 0.80754 1.90861 1.14598 1.62150 1.70640 1.20076 0.94081 1.00934 0.98009 1.21245 0.93474 0.97028 0.98482 1.21050 1.00147 0.97888 0.96355 1.21214 0.93900 0.98675 0.97551 1.21188 0.94928 0.98730 0.99467 1.18098 0.90891 0.93193 0.91914 1.18647 0.92042 0.93086 1.18487 1.23639 0.90421 0.97697 0.93224 1.77250 1.16107 0.93164 1.26131 1.46070 1.08183 1.05033 1.59298 0.71996 1.22430 0.86312 0.98061 1.00717 1.21683 0.97705 0.92315 0.88855 0.92863 0.91696 0.95977 0.91624 0.92173 0.92421 0.92201 0.77440 0.85686 0.85677 0.85746 0.85491 0.80626 0.81084 0.96025 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.19 13.97 55.49 0.78 -28.41 16 2 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 3 Si 0.88 23.98 24.34 -169.99 -4.14 19.84 16 4 H -0.29 -7.95 6.62 56.52 0.37 -7.58 16 5 H -0.30 -8.33 7.11 56.52 0.40 -7.93 16 6 H -0.27 -7.16 6.63 56.52 0.37 -6.79 16 7 C -0.26 -7.69 10.03 -15.06 -0.15 -7.85 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.60 -14.80 2.77 -172.31 -0.48 -15.28 16 10 C 0.15 2.85 6.52 -3.71 -0.02 2.83 16 11 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 12 C -0.12 -1.72 5.35 -26.69 -0.14 -1.86 16 13 C 0.13 2.36 2.60 -67.81 -0.18 2.18 16 14 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 15 N -0.72 -11.18 5.03 -54.73 -0.28 -11.46 16 16 C 0.55 9.39 7.66 -12.48 -0.10 9.29 16 17 O -0.51 -10.76 11.06 5.29 0.06 -10.70 16 18 C -0.13 -1.77 5.90 -104.70 -0.62 -2.39 16 19 C -0.08 -0.88 9.53 -39.22 -0.37 -1.25 16 20 C -0.14 -1.18 10.02 -39.60 -0.40 -1.58 16 21 C -0.10 -0.81 10.02 -39.56 -0.40 -1.20 16 22 C -0.12 -1.26 9.69 -39.30 -0.38 -1.64 16 23 C 0.06 0.82 5.78 -104.53 -0.60 0.22 16 24 C -0.21 -3.18 4.65 -105.36 -0.49 -3.67 16 25 C 0.14 2.37 8.86 -17.03 -0.15 2.22 16 26 N -0.30 -5.43 12.66 30.82 0.39 -5.04 16 27 N -0.48 -6.74 7.32 30.65 0.22 -6.52 16 28 H 0.44 4.60 8.96 -182.68 -1.64 2.96 16 29 C 0.07 0.96 11.87 -16.87 -0.20 0.76 16 30 C 0.12 2.80 3.78 -3.70 -0.01 2.79 16 31 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 32 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 4.61 6.63 -40.82 -0.27 4.34 16 39 H 0.13 1.03 6.40 -52.49 -0.34 0.70 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.18 2.95 7.36 -52.49 -0.39 2.57 16 44 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 45 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 46 H 0.08 2.15 4.50 -51.93 -0.23 1.91 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -38.00 366.86 -9.84 -47.83 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.45 Total: 6.81 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -4.47 Total: -2.60 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.64 Total: -66.71 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.06 Total: -10.70 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -4.14 Total: 19.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.00 -9.84 -47.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007475397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.686 kcal (2) G-P(sol) polarization free energy of solvation -37.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds