Wall clock time and date at job start Sat Apr 11 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47066 * 272.92098 * 3 2 1 5 5 H 1.48501 * 109.46599 * 32.91784 * 3 2 1 6 6 H 1.48493 * 109.47142 * 152.91572 * 3 2 1 7 7 C 1.38810 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99667 * 339.36500 * 7 2 1 9 9 N 1.36939 * 120.00108 * 159.37289 * 7 2 1 10 10 C 1.46924 * 120.63092 * 152.59641 * 9 7 2 11 11 C 1.53191 * 108.77424 * 126.39059 * 10 9 7 12 12 C 1.53042 * 109.31117 * 54.63359 * 11 10 9 13 13 C 1.53041 * 109.54086 * 298.63120 * 12 11 10 14 14 H 1.08997 * 109.49737 * 301.38704 * 13 12 11 15 15 N 1.46501 * 109.50054 * 181.31766 * 13 12 11 16 16 C 1.34773 * 120.00077 * 155.06744 * 15 13 12 17 17 O 1.21588 * 119.99611 * 0.02562 * 16 15 13 18 18 C 1.47524 * 120.00056 * 179.97438 * 16 15 13 19 19 C 1.39591 * 120.21691 * 0.25798 * 18 16 15 20 20 C 1.37860 * 119.96530 * 180.29674 * 19 18 16 21 21 C 1.38574 * 120.41443 * 359.69578 * 20 19 18 22 22 C 1.37970 * 120.44256 * 0.03035 * 21 20 19 23 23 C 1.39247 * 120.02332 * 359.97438 * 22 21 20 24 24 C 1.48175 * 120.20540 * 179.97438 * 23 22 21 25 25 C 1.40982 * 126.25020 * 129.69201 * 24 23 22 26 26 N 1.30621 * 108.06032 * 179.85379 * 25 24 23 27 27 N 1.39992 * 108.58291 * 0.40931 * 26 25 24 28 28 H 0.97001 * 125.87169 * 179.73074 * 27 26 25 29 29 C 1.34709 * 108.26461 * 359.73835 * 27 26 25 30 30 C 1.46936 * 120.60080 * 332.57706 * 9 7 2 31 31 H 0.96996 * 120.00620 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58727 * 6.60437 * 10 9 7 33 33 H 1.09000 * 109.70065 * 246.24237 * 10 9 7 34 34 H 1.08998 * 109.49795 * 294.68533 * 11 10 9 35 35 H 1.09002 * 109.52699 * 174.60106 * 11 10 9 36 36 H 1.09002 * 109.45678 * 178.61649 * 12 11 10 37 37 H 1.08993 * 109.46001 * 58.65854 * 12 11 10 38 38 H 0.97000 * 119.99546 * 335.06990 * 15 13 12 39 39 H 1.07996 * 120.02265 * 0.02562 * 19 18 16 40 40 H 1.08004 * 119.79609 * 179.71855 * 20 19 18 41 41 H 1.07998 * 119.77849 * 180.02562 * 21 20 19 42 42 H 1.08003 * 119.98798 * 179.97438 * 22 21 20 43 43 H 1.07998 * 125.96351 * 0.02562 * 25 24 23 44 44 H 1.08004 * 126.19851 * 180.02562 * 29 27 26 45 45 H 1.08994 * 109.56377 * 113.80876 * 30 9 7 46 46 H 1.09003 * 109.61542 * 353.37818 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4359 2.0822 -1.3983 5 1 1.4797 2.6340 0.7609 6 1 3.5771 1.4233 0.6374 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3138 -1.2399 -0.4183 10 6 4.2351 -2.2628 0.0951 11 6 4.8754 -2.9899 -1.0915 12 6 5.5293 -1.9644 -2.0205 13 6 4.4626 -1.0079 -2.5586 14 1 3.7004 -1.5759 -3.0919 15 7 5.0844 -0.0461 -3.4723 16 6 4.3458 0.5472 -4.4309 17 8 3.1634 0.2845 -4.5371 18 6 4.9718 1.5161 -5.3505 19 6 6.3299 1.8177 -5.2353 20 6 6.9081 2.7285 -6.0935 21 6 6.1508 3.3445 -7.0771 22 6 4.8084 3.0547 -7.2097 23 6 4.2055 2.1377 -6.3527 24 6 2.7640 1.8240 -6.4912 25 6 2.1947 0.5365 -6.5683 26 7 0.9005 0.6721 -6.6814 27 7 0.5942 2.0381 -6.6907 28 1 -0.2937 2.4210 -6.7682 29 6 1.7443 2.7295 -6.5736 30 6 3.8170 -0.2582 -1.3890 31 1 -0.4851 0.8400 -0.0004 32 1 3.6840 -2.9770 0.7070 33 1 5.0118 -1.7896 0.6959 34 1 4.1089 -3.5393 -1.6382 35 1 5.6317 -3.6854 -0.7276 36 1 6.0069 -2.4811 -2.8530 37 1 6.2784 -1.3986 -1.4667 38 1 6.0276 0.1636 -3.3872 39 1 6.9263 1.3411 -4.4715 40 1 7.9581 2.9632 -5.9991 41 1 6.6144 4.0561 -7.7441 42 1 4.2249 3.5394 -7.9786 43 1 2.7342 -0.3985 -6.5363 44 1 1.8425 3.8048 -6.5488 45 1 4.5589 0.3809 -0.9105 46 1 2.9903 0.3498 -1.7564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007475397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:58 Heat of formation + Delta-G solvation = 74.424432 kcal Electronic energy + Delta-G solvation = -30140.446207 eV Core-core repulsion = 26224.479811 eV Total energy + Delta-G solvation = -3915.966397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19012 -41.09529 -39.66561 -38.69969 -35.96873 -34.57189 -33.34692 -32.71206 -32.37503 -32.17289 -30.33489 -29.37972 -27.23360 -25.28425 -24.25409 -23.98861 -23.18794 -22.81519 -21.47497 -21.21370 -20.78184 -19.22786 -18.88623 -18.42672 -17.57793 -17.00343 -16.45702 -16.24631 -15.90849 -15.88011 -15.83266 -15.50956 -15.28882 -15.10177 -14.86038 -14.49016 -14.47384 -14.29687 -14.05775 -13.95122 -13.81799 -13.43818 -13.20972 -12.73570 -12.64787 -12.55126 -12.47400 -12.12912 -11.82107 -11.74487 -11.70938 -11.60386 -11.36610 -11.07388 -10.83365 -10.40782 -10.17555 -9.98834 -9.83279 -8.96832 -8.92313 -8.25404 -5.55358 -0.10639 0.38178 1.07308 1.21086 1.24185 1.34898 1.86603 2.03393 2.11339 2.20977 2.33596 2.97229 3.00953 3.35716 3.73707 3.76568 3.86360 3.99764 4.04115 4.04646 4.14535 4.25359 4.28781 4.32835 4.39330 4.53509 4.56838 4.66548 4.69033 4.78494 4.87460 4.88709 4.97076 5.02875 5.10340 5.13053 5.15007 5.22380 5.39802 5.45072 5.55080 5.55983 5.59926 5.71483 5.81095 6.03540 6.05144 6.48844 6.63233 6.77519 6.85501 7.35048 7.56720 7.95662 8.94476 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.004543 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.111674 B = 6161.638106 C = 7386.297602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.301 1.301 5 H -0.307 1.307 6 H -0.250 1.250 7 C -0.248 4.248 8 H 0.055 0.945 9 N -0.618 5.618 10 C 0.137 3.863 11 C -0.124 4.124 12 C -0.106 4.106 13 C 0.140 3.860 14 H 0.052 0.948 15 N -0.709 5.709 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.129 4.129 21 C -0.083 4.083 22 C -0.124 4.124 23 C 0.038 3.962 24 C -0.227 4.227 25 C 0.122 3.878 26 N -0.353 5.353 27 N -0.476 5.476 28 H 0.449 0.551 29 C 0.080 3.920 30 C 0.122 3.878 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.413 0.587 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.215 0.785 45 H 0.035 0.965 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.791 8.107 -16.541 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.779 3.221 4 H -0.229 1.229 5 H -0.236 1.236 6 H -0.174 1.174 7 C -0.378 4.378 8 H 0.073 0.927 9 N -0.343 5.343 10 C 0.013 3.987 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.033 3.967 14 H 0.070 0.930 15 N -0.362 5.362 16 C 0.327 3.673 17 O -0.439 6.439 18 C -0.160 4.160 19 C -0.100 4.100 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.142 4.142 23 C 0.036 3.964 24 C -0.238 4.238 25 C -0.065 4.065 26 N -0.177 5.177 27 N -0.184 5.184 28 H 0.295 0.705 29 C -0.068 4.068 30 C -0.004 4.004 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.251 0.749 39 H 0.165 0.835 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.164 0.836 43 H 0.179 0.821 44 H 0.232 0.768 45 H 0.053 0.947 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 18.722 7.331 -16.654 26.108 hybrid contribution -0.288 1.215 0.564 1.370 sum 18.434 8.546 -16.090 25.918 Atomic orbital electron populations 1.69973 1.07376 1.26895 1.55862 1.25884 0.95792 1.00902 1.00270 0.85865 0.79407 0.80828 0.76009 1.22925 1.23561 1.17407 1.18900 0.87195 0.93443 1.38247 0.92706 1.44446 1.07997 1.35034 1.46811 1.21263 0.92034 0.90284 0.95162 1.21919 1.00083 0.97789 0.96580 1.21669 0.96288 0.96433 0.99997 1.21302 0.96108 0.90122 0.89120 0.92995 1.45867 1.13689 1.44342 1.32293 1.18935 0.86256 0.81027 0.81055 1.90850 1.17074 1.63892 1.72070 1.19945 0.95809 1.01674 0.98527 1.21509 0.91913 0.97281 0.99335 1.21503 1.01802 0.96279 0.95081 1.21693 0.92982 0.98084 0.97295 1.21419 0.96051 0.97733 0.99000 1.18246 0.90031 0.94909 0.93251 1.18982 0.93938 0.92271 1.18642 1.23600 0.90588 0.98551 0.93729 1.77114 1.16810 0.95637 1.28093 1.46080 1.09396 1.03994 1.58956 0.70517 1.23101 0.85193 0.99715 0.98809 1.21614 0.96426 0.92208 0.90160 0.93257 0.92587 0.93631 0.93660 0.87709 0.89135 0.89433 0.74863 0.83514 0.82105 0.82098 0.83600 0.82065 0.76825 0.94721 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -65.18 13.97 21.65 0.30 -64.88 16 2 C -0.03 -2.15 5.23 84.86 0.44 -1.71 16 3 Si 0.95 51.83 24.34 68.60 1.67 53.49 16 4 H -0.30 -16.94 6.62 99.48 0.66 -16.28 16 5 H -0.31 -16.64 7.11 99.48 0.71 -15.94 16 6 H -0.25 -12.54 6.63 99.48 0.66 -11.88 16 7 C -0.25 -15.15 10.03 84.03 0.84 -14.30 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.62 -30.73 2.77 -699.06 -1.94 -32.66 16 10 C 0.14 5.15 6.52 86.36 0.56 5.71 16 11 C -0.12 -3.59 6.08 30.67 0.19 -3.41 16 12 C -0.11 -2.74 5.35 30.62 0.16 -2.57 16 13 C 0.14 5.10 2.60 45.07 0.12 5.22 16 14 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 15 N -0.71 -21.13 5.03 -445.34 -2.24 -23.37 16 16 C 0.54 18.81 7.66 86.69 0.66 19.47 16 17 O -0.56 -25.44 11.06 -3.99 -0.04 -25.48 16 18 C -0.16 -4.17 5.90 -19.92 -0.12 -4.28 16 19 C -0.08 -1.42 9.53 22.51 0.21 -1.21 16 20 C -0.13 -1.56 10.02 22.26 0.22 -1.34 16 21 C -0.08 -0.98 10.02 22.29 0.22 -0.76 16 22 C -0.12 -2.12 9.69 22.45 0.22 -1.90 16 23 C 0.04 0.98 5.78 -19.81 -0.11 0.87 16 24 C -0.23 -7.04 4.65 -20.34 -0.09 -7.13 16 25 C 0.12 4.56 8.86 85.55 0.76 5.32 16 26 N -0.35 -13.63 12.66 -56.39 -0.71 -14.34 16 27 N -0.48 -13.95 7.32 -56.94 -0.42 -14.36 16 28 H 0.45 9.86 8.96 -213.39 -1.91 7.95 16 29 C 0.08 2.09 11.87 83.87 1.00 3.09 16 30 C 0.12 5.65 3.78 86.36 0.33 5.98 16 31 H 0.26 16.88 8.31 -92.71 -0.77 16.11 16 32 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.41 8.39 6.63 -92.71 -0.62 7.77 16 39 H 0.15 1.76 6.40 -2.91 -0.02 1.74 16 40 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.16 6.16 7.36 -2.91 -0.02 6.14 16 44 H 0.22 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.03 1.51 7.07 -2.39 -0.02 1.49 16 46 H 0.03 1.74 4.50 -2.39 -0.01 1.73 16 Total: -1.00 -92.67 366.86 0.64 -92.02 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -1.59 Total: 22.53 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.61 Total: 7.05 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -5.00 Total: -149.62 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 1.67 Total: 53.49 kcal Total: -92.67 0.64 -92.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007475397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.449 kcal (2) G-P(sol) polarization free energy of solvation -92.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds