Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99478 * 163.07905 * 7 2 1 9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1 10 10 C 1.46926 * 120.62731 * 331.80308 * 9 7 2 11 11 C 1.53163 * 108.76754 * 233.63287 * 10 9 7 12 12 C 1.53039 * 109.32922 * 305.35710 * 11 10 9 13 13 C 1.53045 * 109.52540 * 61.37539 * 12 11 10 14 14 H 1.08996 * 109.50091 * 58.58826 * 13 12 11 15 15 N 1.46494 * 109.49690 * 178.69031 * 13 12 11 16 16 C 1.34779 * 120.00105 * 204.99523 * 15 13 12 17 17 O 1.21593 * 119.99617 * 0.02562 * 16 15 13 18 18 C 1.47525 * 120.00323 * 180.02562 * 16 15 13 19 19 C 1.39588 * 120.21477 * 0.02562 * 18 16 15 20 20 C 1.37861 * 119.96375 * 180.02562 * 19 18 16 21 21 C 1.38569 * 120.41616 * 359.97438 * 20 19 18 22 22 C 1.37973 * 120.44070 * 0.02562 * 21 20 19 23 23 C 1.39240 * 120.02503 * 359.71935 * 22 21 20 24 24 C 1.48175 * 120.20940 * 180.29818 * 23 22 21 25 25 C 1.40982 * 126.25225 * 130.25483 * 24 23 22 26 26 N 1.30624 * 108.06318 * 180.02562 * 25 24 23 27 27 N 1.40003 * 108.57826 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.86407 * 180.02562 * 27 26 25 29 29 C 1.34701 * 108.26419 * 359.73371 * 27 26 25 30 30 C 1.46921 * 120.63017 * 151.83323 * 9 7 2 31 31 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.59142 * 353.42466 * 10 9 7 33 33 H 1.09009 * 109.58156 * 113.84883 * 10 9 7 34 34 H 1.09007 * 109.47515 * 185.40727 * 11 10 9 35 35 H 1.09001 * 109.49969 * 65.32730 * 11 10 9 36 36 H 1.08992 * 109.46121 * 301.36334 * 12 11 10 37 37 H 1.09001 * 109.45778 * 181.38566 * 12 11 10 38 38 H 0.96999 * 120.00288 * 25.00250 * 15 13 12 39 39 H 1.08004 * 120.02472 * 0.02765 * 19 18 16 40 40 H 1.08006 * 119.79656 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.77985 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.98667 * 180.02562 * 22 21 20 43 43 H 1.07993 * 125.96947 * 359.97438 * 25 24 23 44 44 H 1.07999 * 126.19529 * 180.26654 * 29 27 26 45 45 H 1.08996 * 109.58667 * 6.57753 * 30 9 7 46 46 H 1.09006 * 109.58085 * 246.15246 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3623 0.3460 10 6 0.2265 -2.3400 1.2682 11 6 0.4988 -3.3186 2.4146 12 6 0.8133 -4.7005 1.8370 13 6 2.0684 -4.6169 0.9652 14 1 2.9034 -4.2527 1.5636 15 7 2.3869 -5.9461 0.4380 16 6 3.6529 -6.2461 0.0865 17 8 4.5309 -5.4136 0.2075 18 6 3.9736 -7.5844 -0.4450 19 6 2.9691 -8.5433 -0.5863 20 6 3.2746 -9.7924 -1.0831 21 6 4.5753 -10.1046 -1.4450 22 6 5.5813 -9.1698 -1.3124 23 6 5.2923 -7.9007 -0.8177 24 6 6.3684 -6.8914 -0.6799 25 6 6.3289 -5.5616 -1.1465 26 7 7.4616 -4.9897 -0.8364 27 7 8.2626 -5.9214 -0.1651 28 1 9.1555 -5.7606 0.1778 29 6 7.5776 -7.0775 -0.0718 30 6 1.8141 -3.6529 -0.1979 31 1 -0.4849 0.8401 -0.0004 32 1 0.0994 -1.3343 1.6687 33 1 -0.6768 -2.6411 0.7374 34 1 -0.3817 -3.3833 3.0540 35 1 1.3486 -2.9666 2.9994 36 1 -0.0269 -5.0411 1.2321 37 1 0.9833 -5.4044 2.6517 38 1 1.6865 -6.6103 0.3417 39 1 1.9531 -8.3068 -0.3067 40 1 2.4952 -10.5322 -1.1916 41 1 4.8031 -11.0863 -1.8334 42 1 6.5924 -9.4208 -1.5972 43 1 5.5063 -5.0972 -1.6698 44 1 7.9230 -7.9875 0.3960 45 1 2.7345 -3.5133 -0.7647 46 1 1.0402 -4.0609 -0.8482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007475405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 96.480557 kcal Electronic energy + Delta-G solvation = -29535.908110 eV Core-core repulsion = 25620.898139 eV Total energy + Delta-G solvation = -3915.009971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15414 -39.88677 -38.44243 -37.13430 -34.38732 -32.68609 -32.33376 -31.34731 -31.06653 -30.41249 -28.74266 -28.21524 -25.24238 -24.05732 -23.17891 -22.12886 -21.85693 -21.64282 -20.18454 -19.98410 -19.33552 -18.16534 -17.37400 -16.72831 -15.87150 -15.67715 -15.07408 -14.90406 -14.87804 -14.60425 -14.24023 -14.12750 -13.80969 -13.55623 -13.42109 -13.36414 -13.05470 -12.98386 -12.43375 -12.36332 -12.21013 -11.93970 -11.77416 -11.41842 -11.04918 -10.85336 -10.74783 -10.57882 -10.22830 -10.17749 -10.07667 -9.86309 -9.67491 -9.57845 -9.33778 -9.12313 -9.00704 -8.73602 -8.35309 -7.97231 -6.62152 -5.74091 -3.16267 0.74101 1.10088 2.07834 2.85656 3.02767 3.24490 3.41618 3.43008 3.50605 3.55880 3.85627 4.56074 4.63485 4.66532 4.71569 4.86397 4.89652 5.15962 5.25269 5.32471 5.35782 5.42396 5.57123 5.62149 5.65965 5.71752 5.75508 5.85229 5.96294 6.12258 6.13899 6.19345 6.25370 6.27371 6.38730 6.56211 6.64317 6.69362 6.72588 6.73820 6.82188 6.88555 7.05104 7.36067 7.39327 7.67987 7.81250 7.87764 7.88709 8.48458 8.55128 9.26988 9.89189 10.44790 11.34682 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003385 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.926746 B = 8269.278483 C = 9917.205954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.086 0.914 15 N -0.718 5.718 16 C 0.549 3.451 17 O -0.516 6.516 18 C -0.127 4.127 19 C -0.083 4.083 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.125 4.125 23 C 0.059 3.941 24 C -0.208 4.208 25 C 0.142 3.858 26 N -0.307 5.307 27 N -0.484 5.484 28 H 0.436 0.564 29 C 0.070 3.930 30 C 0.144 3.856 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.392 0.608 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.058 0.942 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 -23.447 0.445 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.378 4.378 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.104 0.896 15 N -0.369 5.369 16 C 0.336 3.664 17 O -0.393 6.393 18 C -0.131 4.131 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.113 4.113 22 C -0.144 4.144 23 C 0.057 3.943 24 C -0.220 4.220 25 C -0.046 4.046 26 N -0.129 5.129 27 N -0.190 5.190 28 H 0.279 0.721 29 C -0.078 4.078 30 C 0.016 3.984 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.226 0.774 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.196 0.804 44 H 0.189 0.811 45 H 0.076 0.924 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 9.780 -21.562 0.469 23.681 hybrid contribution -0.222 -0.273 0.306 0.467 sum 9.557 -21.835 0.775 23.848 Atomic orbital electron populations 1.70050 1.05228 1.25308 1.54340 1.25022 0.95286 0.98362 1.00946 0.86232 0.79610 0.83886 0.77198 1.20112 1.21733 1.21591 1.19274 0.92689 0.84610 1.41181 0.91503 1.43999 1.35634 1.01222 1.50171 1.20827 0.88618 0.98408 0.87940 1.22176 1.00390 0.95260 1.00102 1.21678 0.96815 0.98553 0.98256 1.21735 0.97758 0.81244 0.97034 0.89578 1.46116 1.09028 1.16098 1.65616 1.18173 0.82819 0.87020 0.78404 1.90817 1.45669 1.49614 1.53157 1.20075 0.94000 0.94822 1.04153 1.21268 0.98440 0.93097 0.97348 1.21067 0.96858 0.96695 1.00739 1.21220 0.92906 0.99189 0.98035 1.21181 0.99695 0.92641 1.00835 1.18084 0.90577 0.91959 0.93689 1.18674 0.95032 0.95629 1.12669 1.23744 0.93874 0.91295 0.95657 1.77305 1.04705 1.14055 1.16846 1.46100 1.16648 1.08651 1.47570 0.72144 1.22409 0.92848 0.91826 1.00723 1.21177 0.97906 0.86751 0.92580 0.93774 0.89333 0.96334 0.92779 0.92468 0.92283 0.93173 0.77398 0.85598 0.85654 0.85756 0.85551 0.80363 0.81138 0.92360 0.96560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.20 55.49 0.62 -25.96 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 22.46 29.59 -169.99 -5.03 17.44 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 8 H 0.07 1.94 7.88 -52.49 -0.41 1.52 16 9 N -0.59 -15.09 2.99 -172.34 -0.52 -15.60 16 10 C 0.17 4.00 5.30 -3.73 -0.02 3.98 16 11 C -0.14 -2.63 6.08 -26.63 -0.16 -2.79 16 12 C -0.11 -1.86 5.36 -26.69 -0.14 -2.00 16 13 C 0.13 2.30 2.60 -67.81 -0.18 2.12 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -10.37 5.03 -54.73 -0.28 -10.65 16 16 C 0.55 8.51 7.66 -12.47 -0.10 8.41 16 17 O -0.52 -9.78 11.01 5.28 0.06 -9.73 16 18 C -0.13 -1.59 5.90 -104.70 -0.62 -2.21 16 19 C -0.08 -0.79 9.53 -39.22 -0.37 -1.17 16 20 C -0.14 -1.08 10.02 -39.60 -0.40 -1.47 16 21 C -0.10 -0.73 10.02 -39.56 -0.40 -1.13 16 22 C -0.13 -1.14 9.69 -39.31 -0.38 -1.52 16 23 C 0.06 0.71 5.78 -104.54 -0.60 0.11 16 24 C -0.21 -2.79 4.67 -105.36 -0.49 -3.28 16 25 C 0.14 2.29 8.85 -17.03 -0.15 2.14 16 26 N -0.31 -5.01 12.66 30.82 0.39 -4.62 16 27 N -0.48 -5.73 7.32 30.65 0.22 -5.50 16 28 H 0.44 3.57 8.96 -182.68 -1.64 1.94 16 29 C 0.07 0.76 11.87 -16.88 -0.20 0.56 16 30 C 0.14 3.14 6.09 -3.71 -0.02 3.12 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 33 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 4.42 6.64 -40.82 -0.27 4.15 16 39 H 0.13 0.96 6.40 -52.48 -0.34 0.63 16 40 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.18 3.02 7.31 -52.49 -0.38 2.64 16 44 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -34.86 373.22 -10.89 -45.75 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.53 Total: 5.63 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -4.46 Total: -2.38 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.45 Total: -62.34 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.06 Total: -9.73 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.86 -10.89 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007475405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.233 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds