Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48489 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46874 * 299.99942 * 3 2 1 6 6 H 1.48499 * 109.47144 * 59.99437 * 3 2 1 7 7 C 1.38814 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99478 * 163.07905 * 7 2 1 9 9 N 1.36938 * 120.00043 * 343.08763 * 7 2 1 10 10 C 1.46926 * 120.62731 * 331.80308 * 9 7 2 11 11 C 1.53163 * 108.76754 * 233.63287 * 10 9 7 12 12 C 1.53039 * 109.32922 * 305.35710 * 11 10 9 13 13 C 1.53045 * 109.52540 * 61.37539 * 12 11 10 14 14 H 1.08996 * 109.50091 * 58.58826 * 13 12 11 15 15 N 1.46494 * 109.49690 * 178.69031 * 13 12 11 16 16 C 1.34779 * 120.00105 * 204.99523 * 15 13 12 17 17 O 1.21593 * 119.99617 * 0.02562 * 16 15 13 18 18 C 1.47525 * 120.00323 * 180.02562 * 16 15 13 19 19 C 1.39588 * 120.21477 * 0.02562 * 18 16 15 20 20 C 1.37861 * 119.96375 * 180.02562 * 19 18 16 21 21 C 1.38569 * 120.41616 * 359.97438 * 20 19 18 22 22 C 1.37973 * 120.44070 * 0.02562 * 21 20 19 23 23 C 1.39240 * 120.02503 * 359.71935 * 22 21 20 24 24 C 1.48175 * 120.20940 * 180.29818 * 23 22 21 25 25 C 1.40982 * 126.25225 * 130.25483 * 24 23 22 26 26 N 1.30624 * 108.06318 * 180.02562 * 25 24 23 27 27 N 1.40003 * 108.57826 * 359.97438 * 26 25 24 28 28 H 0.96993 * 125.86407 * 180.02562 * 27 26 25 29 29 C 1.34701 * 108.26419 * 359.73371 * 27 26 25 30 30 C 1.46921 * 120.63017 * 151.83323 * 9 7 2 31 31 H 0.96996 * 119.99377 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.59142 * 353.42466 * 10 9 7 33 33 H 1.09009 * 109.58156 * 113.84883 * 10 9 7 34 34 H 1.09007 * 109.47515 * 185.40727 * 11 10 9 35 35 H 1.09001 * 109.49969 * 65.32730 * 11 10 9 36 36 H 1.08992 * 109.46121 * 301.36334 * 12 11 10 37 37 H 1.09001 * 109.45778 * 181.38566 * 12 11 10 38 38 H 0.96999 * 120.00288 * 25.00250 * 15 13 12 39 39 H 1.08004 * 120.02472 * 0.02765 * 19 18 16 40 40 H 1.08006 * 119.79656 * 180.02562 * 20 19 18 41 41 H 1.07998 * 119.77985 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.98667 * 180.02562 * 22 21 20 43 43 H 1.07993 * 125.96947 * 359.97438 * 25 24 23 44 44 H 1.07999 * 126.19529 * 180.26654 * 29 27 26 45 45 H 1.08996 * 109.58667 * 6.57753 * 30 9 7 46 46 H 1.09006 * 109.58085 * 246.15246 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3623 0.3460 10 6 0.2265 -2.3400 1.2682 11 6 0.4988 -3.3186 2.4146 12 6 0.8133 -4.7005 1.8370 13 6 2.0684 -4.6169 0.9652 14 1 2.9034 -4.2527 1.5636 15 7 2.3869 -5.9461 0.4380 16 6 3.6529 -6.2461 0.0865 17 8 4.5309 -5.4136 0.2075 18 6 3.9736 -7.5844 -0.4450 19 6 2.9691 -8.5433 -0.5863 20 6 3.2746 -9.7924 -1.0831 21 6 4.5753 -10.1046 -1.4450 22 6 5.5813 -9.1698 -1.3124 23 6 5.2923 -7.9007 -0.8177 24 6 6.3684 -6.8914 -0.6799 25 6 6.3289 -5.5616 -1.1465 26 7 7.4616 -4.9897 -0.8364 27 7 8.2626 -5.9214 -0.1651 28 1 9.1555 -5.7606 0.1778 29 6 7.5776 -7.0775 -0.0718 30 6 1.8141 -3.6529 -0.1979 31 1 -0.4849 0.8401 -0.0004 32 1 0.0994 -1.3343 1.6687 33 1 -0.6768 -2.6411 0.7374 34 1 -0.3817 -3.3833 3.0540 35 1 1.3486 -2.9666 2.9994 36 1 -0.0269 -5.0411 1.2321 37 1 0.9833 -5.4044 2.6517 38 1 1.6865 -6.6103 0.3417 39 1 1.9531 -8.3068 -0.3067 40 1 2.4952 -10.5322 -1.1916 41 1 4.8031 -11.0863 -1.8334 42 1 6.5924 -9.4208 -1.5972 43 1 5.5063 -5.0972 -1.6698 44 1 7.9230 -7.9875 0.3960 45 1 2.7345 -3.5133 -0.7647 46 1 1.0402 -4.0609 -0.8482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007475405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 72.897641 kcal Electronic energy + Delta-G solvation = -29536.930742 eV Core-core repulsion = 25620.898139 eV Total energy + Delta-G solvation = -3916.032603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14820 -41.01355 -39.53047 -38.58186 -35.97655 -34.28099 -33.28040 -32.35193 -32.31602 -32.10821 -30.02772 -29.30188 -27.27455 -25.10943 -23.96995 -23.89001 -23.26813 -22.77391 -21.27126 -21.22174 -20.72667 -19.12717 -18.73281 -18.34869 -17.20328 -16.78089 -16.44768 -16.18760 -16.00165 -15.80754 -15.61120 -15.41423 -15.12642 -15.00697 -14.73699 -14.44139 -14.28139 -14.14504 -13.96727 -13.91209 -13.39284 -13.17668 -13.03712 -12.79104 -12.67078 -12.53025 -12.15072 -12.06158 -11.99111 -11.78137 -11.64805 -11.52567 -11.30700 -11.02990 -10.63365 -10.32354 -10.08810 -9.98759 -9.79645 -8.87922 -8.69846 -7.92773 -5.38241 -0.06469 0.41950 1.11922 1.40460 1.42085 1.54208 1.89323 2.13359 2.17819 2.21311 2.49339 3.02620 3.21136 3.67672 3.78076 3.81600 3.93422 4.04369 4.10094 4.11591 4.24529 4.29336 4.34619 4.47426 4.53513 4.59346 4.62229 4.73961 4.80557 4.89994 4.93875 5.01555 5.03032 5.11378 5.17366 5.18655 5.26737 5.43422 5.47874 5.58574 5.60045 5.61227 5.63849 5.74167 5.75180 6.06928 6.35273 6.55649 6.68584 6.82517 7.11270 7.38872 7.80934 8.30522 9.12870 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.003385 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.926746 B = 8269.278483 C = 9917.205954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.041 4.041 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.267 4.267 8 H 0.049 0.951 9 N -0.607 5.607 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.147 3.853 14 H 0.053 0.947 15 N -0.706 5.706 16 C 0.543 3.457 17 O -0.559 6.559 18 C -0.153 4.153 19 C -0.083 4.083 20 C -0.131 4.131 21 C -0.084 4.084 22 C -0.124 4.124 23 C 0.040 3.960 24 C -0.226 4.226 25 C 0.122 3.878 26 N -0.355 5.355 27 N -0.474 5.474 28 H 0.450 0.550 29 C 0.089 3.911 30 C 0.147 3.853 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.006 0.994 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.220 0.780 45 H 0.027 0.973 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -27.667 1.202 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.397 4.397 8 H 0.066 0.934 9 N -0.331 5.331 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.040 3.960 14 H 0.071 0.929 15 N -0.359 5.359 16 C 0.332 3.668 17 O -0.438 6.438 18 C -0.156 4.156 19 C -0.102 4.102 20 C -0.149 4.149 21 C -0.102 4.102 22 C -0.142 4.142 23 C 0.038 3.962 24 C -0.238 4.238 25 C -0.065 4.065 26 N -0.179 5.179 27 N -0.182 5.182 28 H 0.296 0.704 29 C -0.059 4.059 30 C 0.021 3.979 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.249 0.751 39 H 0.161 0.839 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.168 0.832 44 H 0.237 0.763 45 H 0.045 0.955 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.726 -25.831 1.226 27.629 hybrid contribution -0.167 0.940 -0.001 0.954 sum 9.559 -24.891 1.225 26.692 Atomic orbital electron populations 1.70166 1.06253 1.25920 1.54973 1.25685 0.96122 1.01044 1.00895 0.85289 0.78216 0.80102 0.77349 1.20279 1.21240 1.20791 1.19382 0.92284 0.86430 1.41593 0.93363 1.44219 1.36068 1.01644 1.51157 1.20708 0.87555 0.98050 0.88965 1.22014 1.01282 0.95354 0.98274 1.21610 0.95957 0.97585 0.99046 1.21167 0.97711 0.82048 0.95052 0.92919 1.45855 1.09650 1.14944 1.65410 1.18830 0.82345 0.88106 0.77473 1.90814 1.46937 1.51294 1.54801 1.19916 0.95404 0.93661 1.06645 1.21498 0.98483 0.93199 0.97014 1.21479 0.97960 0.96338 0.99104 1.21676 0.92300 1.00130 0.96079 1.21419 1.01331 0.91457 0.99987 1.18225 0.89976 0.92945 0.95085 1.18930 0.96742 0.94844 1.13248 1.23514 0.93393 0.93097 0.96515 1.77165 1.05674 1.16156 1.18855 1.46085 1.17029 1.08382 1.46689 0.70356 1.23092 0.91597 0.92495 0.98747 1.21196 0.96250 0.86453 0.94051 0.93810 0.92803 0.97551 0.89611 0.93693 0.90419 0.89574 0.75136 0.83888 0.82500 0.82295 0.83488 0.83190 0.76329 0.95460 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 11.20 21.65 0.24 -56.00 16 2 C -0.04 -2.45 4.92 84.86 0.42 -2.03 16 3 Si 0.96 47.83 29.59 68.60 2.03 49.86 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.27 -16.07 9.58 84.03 0.81 -15.26 16 8 H 0.05 3.01 7.88 -2.91 -0.02 2.99 16 9 N -0.61 -32.72 2.99 -699.15 -2.09 -34.81 16 10 C 0.17 8.45 5.30 86.35 0.46 8.90 16 11 C -0.13 -4.79 6.08 30.66 0.19 -4.60 16 12 C -0.10 -3.17 5.36 30.62 0.16 -3.00 16 13 C 0.15 5.38 2.60 45.07 0.12 5.50 16 14 H 0.05 2.31 7.58 -2.39 -0.02 2.30 16 15 N -0.71 -20.27 5.03 -445.34 -2.24 -22.51 16 16 C 0.54 17.37 7.66 86.69 0.66 18.03 16 17 O -0.56 -22.82 11.01 -4.01 -0.04 -22.87 16 18 C -0.15 -3.71 5.90 -19.92 -0.12 -3.83 16 19 C -0.08 -1.37 9.53 22.51 0.21 -1.15 16 20 C -0.13 -1.50 10.02 22.26 0.22 -1.27 16 21 C -0.08 -0.90 10.02 22.29 0.22 -0.67 16 22 C -0.12 -1.85 9.69 22.45 0.22 -1.63 16 23 C 0.04 0.92 5.78 -19.81 -0.11 0.80 16 24 C -0.23 -6.12 4.67 -20.34 -0.10 -6.22 16 25 C 0.12 4.27 8.85 85.54 0.76 5.02 16 26 N -0.36 -12.38 12.66 -56.40 -0.71 -13.10 16 27 N -0.47 -11.19 7.32 -56.95 -0.42 -11.61 16 28 H 0.45 7.12 8.96 -213.39 -1.91 5.21 16 29 C 0.09 1.81 11.87 83.87 1.00 2.81 16 30 C 0.15 6.80 6.09 86.36 0.53 7.33 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 32 H 0.05 2.99 6.06 -2.39 -0.01 2.98 16 33 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.41 8.48 6.64 -92.71 -0.62 7.86 16 39 H 0.14 1.71 6.40 -2.91 -0.02 1.69 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.15 5.88 7.31 -2.91 -0.02 5.86 16 44 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.03 1.38 7.93 -2.39 -0.02 1.37 16 46 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -83.41 373.22 0.90 -82.51 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -1.50 Total: 19.79 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.64 Total: 8.74 kcal Atomic # 7 Polarization: -132.80 SS G_CDS: -5.22 Total: -138.02 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.04 Total: -22.87 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -83.41 0.90 -82.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007475405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.408 kcal (2) G-P(sol) polarization free energy of solvation -83.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds