Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47313 * 272.90431 * 3 2 1 5 5 H 1.48500 * 109.46888 * 32.90374 * 3 2 1 6 6 H 1.48499 * 109.47087 * 152.89772 * 3 2 1 7 7 C 1.38813 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99949 * 339.36735 * 7 2 1 9 9 N 1.36932 * 120.00025 * 159.35793 * 7 2 1 10 10 C 1.46924 * 120.63314 * 332.60403 * 9 7 2 11 11 C 1.53183 * 108.77798 * 233.62865 * 10 9 7 12 12 C 1.53046 * 109.33914 * 305.37796 * 11 10 9 13 13 C 1.53039 * 109.53571 * 61.31787 * 12 11 10 14 14 H 1.09002 * 109.50104 * 58.64911 * 13 12 11 15 15 N 1.46503 * 109.50046 * 178.71477 * 13 12 11 16 16 C 1.34775 * 120.00378 * 204.93790 * 15 13 12 17 17 O 1.21588 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.47575 * 119.99959 * 179.97438 * 16 15 13 19 19 C 1.39817 * 120.00727 * 179.97438 * 18 16 15 20 20 C 1.36577 * 120.00003 * 179.97438 * 19 18 16 21 21 C 1.39783 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.47659 * 119.99852 * 179.97438 * 21 20 19 23 23 C 1.36235 * 126.77497 * 0.02686 * 22 21 20 24 24 N 1.33688 * 107.86163 * 179.97438 * 23 22 21 25 25 C 1.30653 * 109.57292 * 0.02562 * 24 23 22 26 26 N 1.34962 * 109.03271 * 359.97438 * 25 24 23 27 27 H 0.97000 * 126.45902 * 179.97438 * 26 25 24 28 28 C 1.39780 * 120.00536 * 0.25625 * 21 20 19 29 29 C 1.36586 * 120.00603 * 359.48649 * 28 21 20 30 30 C 1.46928 * 120.62925 * 152.62598 * 9 7 2 31 31 H 0.96997 * 119.99911 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.58763 * 353.41989 * 10 9 7 33 33 H 1.09004 * 109.58676 * 113.69645 * 10 9 7 34 34 H 1.08995 * 109.50143 * 65.31809 * 11 10 9 35 35 H 1.09003 * 109.49957 * 185.38140 * 11 10 9 36 36 H 1.09002 * 109.43610 * 301.31306 * 12 11 10 37 37 H 1.09000 * 109.48587 * 181.35338 * 12 11 10 38 38 H 0.97006 * 119.99547 * 24.93572 * 15 13 12 39 39 H 1.07999 * 119.99658 * 0.02562 * 19 18 16 40 40 H 1.07997 * 120.00127 * 180.02562 * 20 19 18 41 41 H 1.08005 * 126.07462 * 359.97438 * 23 22 21 42 42 H 1.08000 * 125.48235 * 180.02562 * 25 24 23 43 43 H 1.08006 * 119.99882 * 179.71884 * 28 21 20 44 44 H 1.07996 * 120.00804 * 180.25457 * 29 28 21 45 45 H 1.08994 * 109.58813 * 6.58263 * 30 9 7 46 46 H 1.09003 * 109.70032 * 246.23090 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4364 2.0819 -1.3982 5 1 1.4798 2.6341 0.7606 6 1 3.5771 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3287 9 7 3.3137 -1.2400 -0.4186 10 6 3.8175 -0.2586 -1.3889 11 6 4.4618 -1.0081 -2.5592 12 6 5.5283 -1.9655 -2.0223 13 6 4.8746 -2.9904 -1.0927 14 1 4.1078 -3.5400 -1.6387 15 7 5.8910 -3.9251 -0.6034 16 6 5.5335 -5.1624 -0.2062 17 8 4.3672 -5.5028 -0.2536 18 6 6.5575 -6.1041 0.2861 19 6 6.1867 -7.3875 0.6986 20 6 7.1346 -8.2591 1.1537 21 6 8.4757 -7.8683 1.2067 22 6 9.5003 -8.8105 1.6993 23 6 9.2947 -10.0853 2.1334 24 7 10.4788 -10.5929 2.4904 25 6 11.4130 -9.6992 2.3017 26 7 10.8528 -8.5739 1.8104 27 1 11.3153 -7.7531 1.5797 28 6 8.8460 -6.5836 0.7989 29 6 7.8991 -5.7135 0.3387 30 6 4.2349 -2.2633 0.0943 31 1 -0.4850 0.8400 0.0004 32 1 2.9911 0.3502 -1.7555 33 1 4.5585 0.3816 -0.9100 34 1 3.6989 -1.5758 -3.0919 35 1 4.9239 -0.2926 -3.2394 36 1 6.2781 -1.3998 -1.4693 37 1 6.0050 -2.4826 -2.8550 38 1 6.8215 -3.6534 -0.5652 39 1 5.1508 -7.6899 0.6565 40 1 6.8483 -9.2506 1.4720 41 1 8.3439 -10.5955 2.1806 42 1 12.4644 -9.8388 2.5053 43 1 9.8816 -6.2802 0.8441 44 1 8.1857 -4.7223 0.0198 45 1 3.6839 -2.9773 0.7063 46 1 5.0119 -1.7904 0.6949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009063621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = 74.176373 kcal Electronic energy + Delta-G solvation = -28171.666907 eV Core-core repulsion = 24255.689754 eV Total energy + Delta-G solvation = -3915.977153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47860 -40.34347 -38.79561 -37.49583 -34.56557 -33.33897 -32.82584 -32.25716 -31.40187 -30.85290 -29.62745 -28.33867 -25.33498 -24.63233 -23.35686 -22.67184 -22.01353 -21.61297 -21.20153 -20.27892 -19.78596 -19.08064 -17.77867 -16.83631 -16.13978 -15.83487 -15.50194 -15.44614 -15.15101 -15.00781 -14.86939 -14.31261 -14.14809 -14.00536 -13.85959 -13.79903 -13.67686 -13.26245 -12.98219 -12.83737 -12.51018 -12.33583 -12.09527 -11.55480 -11.45537 -11.17780 -10.94139 -10.78860 -10.61593 -10.52800 -10.18532 -10.04474 -9.96955 -9.83634 -9.72317 -9.48574 -9.46825 -9.04757 -8.54515 -8.25450 -6.97750 -5.92508 -3.29295 0.16060 1.02881 1.70221 2.52554 2.61023 2.96855 3.18745 3.31020 3.47771 3.50463 3.68857 4.05820 4.25908 4.31643 4.45249 4.53476 4.64796 4.80893 4.92550 4.95833 5.01029 5.07511 5.14416 5.24706 5.32653 5.40233 5.48965 5.50570 5.58909 5.78882 5.86025 5.91479 5.98688 6.05823 6.07925 6.16160 6.19417 6.27969 6.39089 6.42948 6.49454 6.60113 6.63070 6.75301 6.81197 6.91307 7.53491 7.59490 7.97336 8.30181 8.36733 8.95738 9.73240 10.08696 11.23378 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002005 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.203311 B =13959.111956 C =14298.603205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.092 0.908 15 N -0.718 5.718 16 C 0.551 3.449 17 O -0.526 6.526 18 C -0.126 4.126 19 C -0.050 4.050 20 C -0.109 4.109 21 C 0.009 3.991 22 C 0.007 3.993 23 C 0.006 3.994 24 N -0.494 5.494 25 C 0.195 3.805 26 N -0.564 5.564 27 H 0.421 0.579 28 C -0.129 4.129 29 C -0.078 4.078 30 C 0.144 3.856 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.393 0.607 39 H 0.144 0.856 40 H 0.136 0.864 41 H 0.176 0.824 42 H 0.211 0.789 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.956 -14.625 0.043 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.110 0.890 15 N -0.369 5.369 16 C 0.338 3.662 17 O -0.403 6.403 18 C -0.130 4.130 19 C -0.069 4.069 20 C -0.128 4.128 21 C 0.007 3.993 22 C -0.107 4.107 23 C -0.144 4.144 24 N -0.212 5.212 25 C -0.088 4.088 26 N -0.167 5.167 27 H 0.260 0.740 28 C -0.148 4.148 29 C -0.097 4.097 30 C 0.017 3.983 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.228 0.772 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.193 0.807 42 H 0.228 0.772 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.086 0.914 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 25.044 -15.593 0.351 29.504 hybrid contribution 1.200 2.445 -0.378 2.750 sum 26.244 -13.148 -0.027 29.354 Atomic orbital electron populations 1.69846 1.05686 1.26483 1.52952 1.25277 0.95238 0.97505 0.99578 0.86944 0.79980 0.84746 0.76934 1.21628 1.23156 1.19699 1.18953 0.84757 0.94908 1.40052 0.89532 1.44285 1.08712 1.32702 1.46760 1.21402 0.97452 0.92098 0.89450 1.21994 0.97842 0.98318 0.98988 1.21682 0.98419 0.96999 0.98318 1.21742 0.89947 0.89390 0.96970 0.88958 1.46032 1.11430 1.13464 1.65998 1.18171 0.88198 0.81845 0.78007 1.90845 1.18774 1.76933 1.53702 1.20188 0.93479 0.95685 1.03629 1.21030 1.00747 0.91498 0.93597 1.20818 0.90924 1.00515 1.00531 1.18079 0.91622 0.91958 0.97636 1.19691 0.83251 0.97285 1.10501 1.22513 0.97353 0.91639 1.02850 1.70199 0.99271 1.30625 1.21145 1.25088 1.00314 0.82239 1.01131 1.43337 1.07389 1.15774 1.50231 0.74040 1.20696 0.99401 0.93156 1.01555 1.20946 0.91951 0.99471 0.97282 1.21210 0.92719 0.91358 0.93006 0.92775 0.90732 0.95663 0.91324 0.92209 0.92138 0.92402 0.77227 0.83836 0.84644 0.80705 0.77210 0.86227 0.85288 0.91365 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.18 13.97 55.49 0.78 -27.40 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.40 24.34 -169.99 -4.14 18.26 16 4 H -0.29 -6.99 6.62 56.52 0.37 -6.62 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.74 6.63 56.52 0.37 -6.37 16 7 C -0.26 -7.40 10.03 -15.06 -0.15 -7.55 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.60 -14.44 2.77 -172.33 -0.48 -14.92 16 10 C 0.12 2.59 4.21 -3.72 -0.02 2.58 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 12 C -0.12 -1.65 5.36 -26.69 -0.14 -1.79 16 13 C 0.12 2.07 2.60 -67.81 -0.18 1.89 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -9.44 5.03 -54.72 -0.28 -9.72 16 16 C 0.55 8.10 7.73 -12.45 -0.10 8.00 16 17 O -0.53 -10.08 15.99 5.29 0.08 -10.00 16 18 C -0.13 -1.42 5.88 -104.91 -0.62 -2.04 16 19 C -0.05 -0.52 9.53 -39.59 -0.38 -0.90 16 20 C -0.11 -0.92 9.52 -39.60 -0.38 -1.30 16 21 C 0.01 0.07 5.88 -104.90 -0.62 -0.55 16 22 C 0.01 0.06 6.96 -82.08 -0.57 -0.52 16 23 C 0.01 0.06 11.28 -17.46 -0.20 -0.14 16 24 N -0.49 -4.63 11.22 -14.38 -0.16 -4.79 16 25 C 0.20 1.16 13.02 -90.32 -1.18 -0.02 16 26 N -0.56 -2.98 6.06 -10.66 -0.06 -3.04 16 27 H 0.42 0.91 8.20 -40.82 -0.33 0.58 16 28 C -0.13 -0.92 9.65 -39.60 -0.38 -1.31 16 29 C -0.08 -0.64 9.48 -39.59 -0.38 -1.02 16 30 C 0.14 2.94 6.09 -3.71 -0.02 2.92 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.07 1.76 4.49 -51.93 -0.23 1.52 16 33 H 0.03 0.53 7.07 -51.93 -0.37 0.16 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 3.75 6.61 -40.82 -0.27 3.48 16 39 H 0.14 1.57 7.64 -52.49 -0.40 1.16 16 40 H 0.14 0.85 7.04 -52.49 -0.37 0.48 16 41 H 0.18 1.19 7.30 -52.48 -0.38 0.81 16 42 H 0.21 0.38 8.06 -52.49 -0.42 -0.05 16 43 H 0.12 0.52 7.27 -52.48 -0.38 0.13 16 44 H 0.13 0.77 6.38 -52.49 -0.34 0.44 16 45 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -36.97 370.93 -10.24 -47.21 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.03 Total: 2.34 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -5.55 Total: -3.53 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.20 Total: -59.87 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.97 -10.24 -47.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009063621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.385 kcal (2) G-P(sol) polarization free energy of solvation -36.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds