Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47313 * 272.90431 * 3 2 1 5 5 H 1.48500 * 109.46888 * 32.90374 * 3 2 1 6 6 H 1.48499 * 109.47087 * 152.89772 * 3 2 1 7 7 C 1.38813 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99949 * 339.36735 * 7 2 1 9 9 N 1.36932 * 120.00025 * 159.35793 * 7 2 1 10 10 C 1.46924 * 120.63314 * 332.60403 * 9 7 2 11 11 C 1.53183 * 108.77798 * 233.62865 * 10 9 7 12 12 C 1.53046 * 109.33914 * 305.37796 * 11 10 9 13 13 C 1.53039 * 109.53571 * 61.31787 * 12 11 10 14 14 H 1.09002 * 109.50104 * 58.64911 * 13 12 11 15 15 N 1.46503 * 109.50046 * 178.71477 * 13 12 11 16 16 C 1.34775 * 120.00378 * 204.93790 * 15 13 12 17 17 O 1.21588 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.47575 * 119.99959 * 179.97438 * 16 15 13 19 19 C 1.39817 * 120.00727 * 179.97438 * 18 16 15 20 20 C 1.36577 * 120.00003 * 179.97438 * 19 18 16 21 21 C 1.39783 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.47659 * 119.99852 * 179.97438 * 21 20 19 23 23 C 1.36235 * 126.77497 * 0.02686 * 22 21 20 24 24 N 1.33688 * 107.86163 * 179.97438 * 23 22 21 25 25 C 1.30653 * 109.57292 * 0.02562 * 24 23 22 26 26 N 1.34962 * 109.03271 * 359.97438 * 25 24 23 27 27 H 0.97000 * 126.45902 * 179.97438 * 26 25 24 28 28 C 1.39780 * 120.00536 * 0.25625 * 21 20 19 29 29 C 1.36586 * 120.00603 * 359.48649 * 28 21 20 30 30 C 1.46928 * 120.62925 * 152.62598 * 9 7 2 31 31 H 0.96997 * 119.99911 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.58763 * 353.41989 * 10 9 7 33 33 H 1.09004 * 109.58676 * 113.69645 * 10 9 7 34 34 H 1.08995 * 109.50143 * 65.31809 * 11 10 9 35 35 H 1.09003 * 109.49957 * 185.38140 * 11 10 9 36 36 H 1.09002 * 109.43610 * 301.31306 * 12 11 10 37 37 H 1.09000 * 109.48587 * 181.35338 * 12 11 10 38 38 H 0.97006 * 119.99547 * 24.93572 * 15 13 12 39 39 H 1.07999 * 119.99658 * 0.02562 * 19 18 16 40 40 H 1.07997 * 120.00127 * 180.02562 * 20 19 18 41 41 H 1.08005 * 126.07462 * 359.97438 * 23 22 21 42 42 H 1.08000 * 125.48235 * 180.02562 * 25 24 23 43 43 H 1.08006 * 119.99882 * 179.71884 * 28 21 20 44 44 H 1.07996 * 120.00804 * 180.25457 * 29 28 21 45 45 H 1.08994 * 109.58813 * 6.58263 * 30 9 7 46 46 H 1.09003 * 109.70032 * 246.23090 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4364 2.0819 -1.3982 5 1 1.4798 2.6341 0.7606 6 1 3.5771 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5222 -2.1077 0.3287 9 7 3.3137 -1.2400 -0.4186 10 6 3.8175 -0.2586 -1.3889 11 6 4.4618 -1.0081 -2.5592 12 6 5.5283 -1.9655 -2.0223 13 6 4.8746 -2.9904 -1.0927 14 1 4.1078 -3.5400 -1.6387 15 7 5.8910 -3.9251 -0.6034 16 6 5.5335 -5.1624 -0.2062 17 8 4.3672 -5.5028 -0.2536 18 6 6.5575 -6.1041 0.2861 19 6 6.1867 -7.3875 0.6986 20 6 7.1346 -8.2591 1.1537 21 6 8.4757 -7.8683 1.2067 22 6 9.5003 -8.8105 1.6993 23 6 9.2947 -10.0853 2.1334 24 7 10.4788 -10.5929 2.4904 25 6 11.4130 -9.6992 2.3017 26 7 10.8528 -8.5739 1.8104 27 1 11.3153 -7.7531 1.5797 28 6 8.8460 -6.5836 0.7989 29 6 7.8991 -5.7135 0.3387 30 6 4.2349 -2.2633 0.0943 31 1 -0.4850 0.8400 0.0004 32 1 2.9911 0.3502 -1.7555 33 1 4.5585 0.3816 -0.9100 34 1 3.6989 -1.5758 -3.0919 35 1 4.9239 -0.2926 -3.2394 36 1 6.2781 -1.3998 -1.4693 37 1 6.0050 -2.4826 -2.8550 38 1 6.8215 -3.6534 -0.5652 39 1 5.1508 -7.6899 0.6565 40 1 6.8483 -9.2506 1.4720 41 1 8.3439 -10.5955 2.1806 42 1 12.4644 -9.8388 2.5053 43 1 9.8816 -6.2802 0.8441 44 1 8.1857 -4.7223 0.0198 45 1 3.6839 -2.9773 0.7063 46 1 5.0119 -1.7904 0.6949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009063621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = 48.147619 kcal Electronic energy + Delta-G solvation = -28172.795599 eV Core-core repulsion = 24255.689754 eV Total energy + Delta-G solvation = -3917.105845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.98270 -41.38767 -39.82988 -38.87458 -36.07406 -34.43201 -33.87888 -33.17731 -32.68455 -32.07541 -30.87113 -29.15900 -27.23334 -25.52758 -24.16942 -23.76262 -23.68337 -22.36545 -21.83676 -21.34291 -21.14915 -19.64887 -18.80652 -18.72730 -17.45201 -17.14660 -16.44474 -16.38498 -16.00797 -15.97878 -15.81247 -15.66447 -15.42100 -14.94596 -14.88081 -14.79437 -14.71460 -14.46773 -14.25869 -14.11075 -13.76177 -13.66645 -13.32217 -13.17586 -12.81509 -12.59801 -12.44808 -12.10340 -11.84875 -11.68106 -11.50791 -11.36798 -11.16822 -11.13379 -11.01767 -10.77413 -10.62853 -10.20299 -10.13864 -8.96030 -8.85632 -8.18635 -5.52836 -0.55602 0.38554 1.07940 1.29176 1.41231 1.51727 1.89055 2.06387 2.12000 2.20830 2.40319 2.90128 3.03849 3.33160 3.52051 3.67888 3.73793 3.85259 3.88066 3.99279 4.03062 4.09077 4.24405 4.29407 4.32212 4.41541 4.48440 4.51897 4.64742 4.66222 4.70167 4.89501 4.92204 4.98641 4.99666 5.03778 5.08081 5.19705 5.20709 5.34431 5.36402 5.45311 5.52921 5.64397 5.77038 5.83063 6.09148 6.49185 6.54805 6.88334 7.04321 7.23096 7.58522 7.95968 9.01723 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002005 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.203311 B =13959.111956 C =14298.603205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.040 4.040 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.256 1.256 7 C -0.256 4.256 8 H 0.034 0.966 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.137 3.863 14 H 0.052 0.948 15 N -0.700 5.700 16 C 0.548 3.452 17 O -0.586 6.586 18 C -0.150 4.150 19 C -0.066 4.066 20 C -0.113 4.113 21 C 0.015 3.985 22 C -0.003 4.003 23 C -0.012 4.012 24 N -0.540 5.540 25 C 0.209 3.791 26 N -0.552 5.552 27 H 0.438 0.562 28 C -0.123 4.123 29 C -0.066 4.066 30 C 0.144 3.856 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.179 0.821 42 H 0.251 0.749 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.027 0.973 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.131 -13.163 -0.745 34.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.234 4.234 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.180 1.180 7 C -0.386 4.386 8 H 0.052 0.948 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.143 4.143 13 C 0.031 3.969 14 H 0.071 0.929 15 N -0.352 5.352 16 C 0.337 3.663 17 O -0.467 6.467 18 C -0.154 4.154 19 C -0.085 4.085 20 C -0.132 4.132 21 C 0.014 3.986 22 C -0.118 4.118 23 C -0.162 4.162 24 N -0.259 5.259 25 C -0.074 4.074 26 N -0.156 5.156 27 H 0.280 0.720 28 C -0.141 4.141 29 C -0.085 4.085 30 C 0.018 3.982 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.196 0.804 42 H 0.267 0.733 43 H 0.176 0.824 44 H 0.177 0.823 45 H 0.046 0.954 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 31.327 -14.114 -0.465 34.363 hybrid contribution -0.661 1.775 -0.063 1.895 sum 30.666 -12.339 -0.527 33.060 Atomic orbital electron populations 1.70008 1.07743 1.27464 1.55314 1.26039 0.95989 1.01578 0.99804 0.85700 0.78623 0.78850 0.77971 1.19190 1.23986 1.18004 1.18765 0.87019 0.93274 1.39549 0.94847 1.44350 1.07517 1.34270 1.48060 1.21569 0.97183 0.91973 0.90440 1.21925 0.98121 0.99058 0.97515 1.21652 0.97846 0.95881 0.98906 1.21297 0.90331 0.89871 0.95411 0.92931 1.45738 1.11886 1.12397 1.65197 1.18803 0.88133 0.82490 0.76861 1.90819 1.21579 1.78098 1.56231 1.19973 0.94064 0.95182 1.06145 1.20982 1.00465 0.92186 0.94846 1.20933 0.91137 1.00807 1.00327 1.18227 0.91262 0.92584 0.96560 1.19566 0.84272 0.96877 1.11108 1.22767 0.97784 0.92425 1.03204 1.70190 1.00126 1.32469 1.23101 1.25874 1.01358 0.81446 0.98717 1.43292 1.06386 1.16433 1.49483 0.72021 1.21077 1.00995 0.92133 0.99925 1.21200 0.90271 1.00884 0.96131 1.21280 0.92213 0.90189 0.94521 0.92817 0.93272 0.93606 0.93426 0.88196 0.89069 0.88947 0.74448 0.85831 0.83325 0.80410 0.73349 0.82406 0.82325 0.95421 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.68 13.97 21.65 0.30 -62.38 16 2 C -0.04 -2.41 5.23 84.86 0.44 -1.96 16 3 Si 0.96 46.82 24.34 68.60 1.67 48.49 16 4 H -0.27 -11.89 6.62 99.48 0.66 -11.23 16 5 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.26 -11.67 6.63 99.48 0.66 -11.01 16 7 C -0.26 -15.56 10.03 84.03 0.84 -14.71 16 8 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 9 N -0.62 -30.15 2.77 -699.12 -1.94 -32.08 16 10 C 0.11 4.57 4.21 86.36 0.36 4.93 16 11 C -0.13 -3.85 6.08 30.67 0.19 -3.67 16 12 C -0.11 -2.54 5.36 30.62 0.16 -2.38 16 13 C 0.14 4.47 2.60 45.07 0.12 4.59 16 14 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 15 N -0.70 -17.36 5.03 -445.29 -2.24 -19.60 16 16 C 0.55 16.54 7.73 86.71 0.67 17.21 16 17 O -0.59 -24.52 15.99 -3.99 -0.06 -24.58 16 18 C -0.15 -3.32 5.88 -20.05 -0.12 -3.44 16 19 C -0.07 -1.45 9.53 22.26 0.21 -1.24 16 20 C -0.11 -1.89 9.52 22.26 0.21 -1.68 16 21 C 0.02 0.21 5.88 -20.04 -0.12 0.10 16 22 C 0.00 -0.04 6.96 40.24 0.28 0.24 16 23 C -0.01 -0.20 11.28 83.94 0.95 0.75 16 24 N -0.54 -9.21 11.22 -199.41 -2.24 -11.45 16 25 C 0.21 1.80 13.02 180.24 2.35 4.15 16 26 N -0.55 -3.77 6.06 -187.62 -1.14 -4.90 16 27 H 0.44 -0.21 8.20 -92.71 -0.76 -0.97 16 28 C -0.12 -1.27 9.65 22.26 0.21 -1.05 16 29 C -0.07 -0.88 9.48 22.27 0.21 -0.67 16 30 C 0.14 5.98 6.09 86.36 0.53 6.51 16 31 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.05 2.24 4.49 -2.39 -0.01 2.23 16 33 H 0.05 1.70 7.07 -2.39 -0.02 1.68 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.42 6.28 6.61 -92.70 -0.61 5.67 16 39 H 0.12 3.11 7.64 -2.91 -0.02 3.09 16 40 H 0.15 1.92 7.04 -2.91 -0.02 1.90 16 41 H 0.18 2.44 7.30 -2.91 -0.02 2.41 16 42 H 0.25 -0.21 8.06 -2.91 -0.02 -0.23 16 43 H 0.16 0.42 7.27 -2.91 -0.02 0.39 16 44 H 0.16 1.07 6.38 -2.91 -0.02 1.05 16 45 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -89.90 370.93 1.43 -88.47 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.43 Total: 10.35 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 7.50 Total: 7.68 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -7.25 Total: -130.41 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.67 Total: 48.49 kcal Total: -89.90 1.43 -88.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009063621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.619 kcal (2) G-P(sol) polarization free energy of solvation -89.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds