Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47047 * 274.24500 * 3 2 1 5 5 H 1.48492 * 109.47225 * 34.24701 * 3 2 1 6 6 H 1.48506 * 109.47054 * 154.24904 * 3 2 1 7 7 C 1.38809 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00501 * 339.29638 * 7 2 1 9 9 N 1.36942 * 119.99875 * 159.30387 * 7 2 1 10 10 C 1.46848 * 120.37949 * 331.81565 * 9 7 2 11 11 C 1.53351 * 108.81159 * 236.88550 * 10 9 7 12 12 C 1.53188 * 108.76651 * 308.68532 * 11 10 9 13 13 C 1.52845 * 117.65768 * 269.97290 * 12 11 10 14 14 C 1.52815 * 117.71091 * 201.11463 * 12 11 10 15 15 H 1.08996 * 117.50527 * 0.11493 * 14 12 11 16 16 N 1.46497 * 117.50240 * 215.10151 * 14 12 11 17 17 C 1.34770 * 120.00469 * 155.00516 * 16 14 12 18 18 O 1.21636 * 119.99529 * 359.97438 * 17 16 14 19 19 C 1.47262 * 120.00716 * 179.72434 * 17 16 14 20 20 C 1.38938 * 120.90208 * 0.27315 * 19 17 16 21 21 C 1.39762 * 119.18837 * 179.97438 * 20 19 17 22 22 C 1.35067 * 121.27759 * 0.02562 * 21 20 19 23 23 N 1.36229 * 121.76684 * 359.97438 * 22 21 20 24 24 N 1.40085 * 132.48666 * 180.02562 * 23 22 21 25 25 C 1.31347 * 108.88371 * 179.97438 * 24 23 22 26 26 C 1.38876 * 108.94653 * 0.02562 * 25 24 23 27 27 C 1.37180 * 120.19303 * 359.77145 * 23 22 21 28 28 C 1.53183 * 115.07500 * 55.45153 * 12 11 10 29 29 C 1.46839 * 120.38315 * 151.79754 * 9 7 2 30 30 H 0.97001 * 120.00370 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.57522 * 117.09084 * 10 9 7 32 32 H 1.08998 * 109.58061 * 356.68695 * 10 9 7 33 33 H 1.08995 * 109.58889 * 188.90316 * 11 10 9 34 34 H 1.08998 * 109.58558 * 68.47086 * 11 10 9 35 35 H 1.09003 * 117.50303 * 144.81960 * 13 12 11 36 36 H 1.08998 * 117.50571 * 359.76523 * 13 12 11 37 37 H 0.97005 * 119.99975 * 335.00274 * 16 14 12 38 38 H 1.07995 * 120.40177 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.36153 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.11689 * 179.97438 * 22 21 20 41 41 H 1.08000 * 125.52640 * 179.97438 * 25 24 23 42 42 H 1.08007 * 126.21872 * 179.97438 * 26 25 24 43 43 H 1.08998 * 109.59385 * 64.34079 * 28 12 11 44 44 H 1.09002 * 109.58912 * 184.77477 * 28 12 11 45 45 H 1.08993 * 109.58197 * 242.91597 * 29 9 7 46 46 H 1.09004 * 109.58196 * 3.32449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3963 5 1 1.4954 2.6251 0.7879 6 1 3.5897 1.4159 0.6083 7 6 2.0101 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3316 9 7 3.3133 -1.2406 -0.4186 10 6 3.8057 -0.2689 -1.4034 11 6 4.3784 -1.0299 -2.6053 12 6 5.3750 -2.0762 -2.0967 13 6 6.8377 -1.6547 -1.9586 14 6 6.4165 -2.6039 -3.0827 15 1 6.3964 -2.2057 -4.0971 16 7 6.8095 -4.0101 -2.9635 17 6 7.2953 -4.6672 -4.0352 18 8 7.4071 -4.0927 -5.1015 19 6 7.6961 -6.0790 -3.9140 20 6 7.5761 -6.7536 -2.7052 21 6 7.9668 -8.0934 -2.6307 22 6 8.4578 -8.7417 -3.7091 23 7 8.5949 -8.1247 -4.9159 24 7 9.0671 -8.5693 -6.1576 25 6 8.9959 -7.5798 -7.0185 26 6 8.4798 -6.4610 -6.3778 27 6 8.2270 -6.8117 -5.0651 28 6 4.8160 -3.0549 -1.0593 29 6 4.2344 -2.2537 0.1118 30 1 -0.4851 0.8400 -0.0004 31 1 4.5867 0.3437 -0.9530 32 1 2.9836 0.3670 -1.7316 33 1 4.8881 -0.3326 -3.2701 34 1 3.5701 -1.5259 -3.1426 35 1 7.4071 -2.0766 -1.1304 36 1 7.0948 -0.6317 -2.2335 37 1 6.7200 -4.4683 -2.1132 38 1 7.1849 -6.2489 -1.8343 39 1 7.8751 -8.6203 -1.6924 40 1 8.7495 -9.7771 -3.6120 41 1 9.2916 -7.6283 -8.0561 42 1 8.3042 -5.4937 -6.8251 43 1 4.0313 -3.6601 -1.5134 44 1 5.6160 -3.7012 -0.6983 45 1 5.0419 -1.7640 0.6560 46 1 3.6944 -2.9241 0.7806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016707495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = 132.334925 kcal Electronic energy + Delta-G solvation = -28828.893186 eV Core-core repulsion = 24915.437976 eV Total energy + Delta-G solvation = -3913.455209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24431 -40.13888 -38.64038 -37.40450 -35.80475 -33.70049 -32.75710 -31.72760 -31.02412 -30.56455 -29.06170 -28.47296 -25.28916 -24.24750 -23.10612 -23.03749 -22.66208 -21.62967 -21.05695 -20.64255 -18.52569 -17.96517 -17.71081 -16.91967 -16.55740 -16.17282 -15.98253 -15.85964 -15.24296 -14.84505 -14.61116 -14.28792 -14.21632 -13.95647 -13.76710 -13.50642 -12.99853 -12.96147 -12.76538 -12.57430 -12.36951 -12.21149 -12.16804 -11.93376 -11.74110 -11.30508 -11.13309 -10.82403 -10.71075 -10.65582 -10.33572 -10.20652 -10.01209 -9.84525 -9.75859 -9.57697 -9.46833 -8.81710 -8.52398 -7.98475 -6.97336 -5.97090 -3.33228 -0.06913 0.73394 1.81608 2.33546 2.43580 2.82701 3.22146 3.30614 3.47181 3.49950 3.85854 3.96271 4.00092 4.22498 4.30507 4.51031 4.52959 4.74716 4.86120 4.88822 4.94839 5.06231 5.08111 5.24659 5.25553 5.34183 5.39987 5.51314 5.66648 5.69722 5.80553 5.84891 5.87864 5.91615 6.00512 6.10801 6.27627 6.31294 6.32613 6.37123 6.41787 6.45198 6.56882 6.66217 6.66459 6.91834 7.18098 7.28241 7.95619 7.99264 8.31142 8.92968 9.70369 10.08121 11.18843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002309 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.762391 B =12123.499027 C =12591.693673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.131 3.869 11 C -0.099 4.099 12 C -0.101 4.101 13 C -0.183 4.183 14 C 0.076 3.924 15 H 0.136 0.864 16 N -0.689 5.689 17 C 0.569 3.431 18 O -0.526 6.526 19 C -0.126 4.126 20 C -0.036 4.036 21 C -0.180 4.180 22 C 0.142 3.858 23 N -0.287 5.287 24 N -0.317 5.317 25 C 0.080 3.920 26 C -0.255 4.255 27 C 0.126 3.874 28 C -0.099 4.099 29 C 0.153 3.847 30 H 0.263 0.737 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.399 0.601 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.196 0.804 42 H 0.167 0.833 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.567 -15.591 -6.271 25.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.006 3.994 11 C -0.138 4.138 12 C -0.102 4.102 13 C -0.221 4.221 14 C -0.030 4.030 15 H 0.154 0.846 16 N -0.339 5.339 17 C 0.356 3.644 18 O -0.403 6.403 19 C -0.131 4.131 20 C -0.059 4.059 21 C -0.202 4.202 22 C 0.016 3.984 23 N -0.055 5.055 24 N -0.139 5.139 25 C -0.098 4.098 26 C -0.283 4.283 27 C 0.008 3.992 28 C -0.138 4.138 29 C 0.027 3.973 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.236 0.764 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.213 0.787 42 H 0.185 0.815 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.864 -16.372 -6.983 26.671 hybrid contribution 0.171 1.534 0.379 1.590 sum 20.035 -14.837 -6.604 25.791 Atomic orbital electron populations 1.69837 1.05771 1.26580 1.52845 1.25301 0.95217 0.97629 0.99402 0.86938 0.80153 0.84677 0.76951 1.21625 1.23193 1.19489 1.18916 0.85116 0.94686 1.40285 0.89812 1.44271 1.08542 1.34599 1.45298 1.21295 0.97253 0.91996 0.88900 1.21695 0.97217 0.96190 0.98718 1.21943 0.90187 0.99506 0.98564 1.23583 0.98132 1.00003 1.00405 1.21886 1.03609 0.80103 0.97383 0.84615 1.45218 1.64380 1.11789 1.12549 1.17535 0.77607 0.85080 0.84175 1.90787 1.53899 1.68380 1.27241 1.20423 1.06191 0.94513 0.92015 1.21770 0.93500 0.94210 0.96461 1.20646 1.05186 0.95423 0.98930 1.21558 0.96303 0.99309 0.81259 1.46254 1.41810 1.08861 1.08525 1.77868 1.26236 1.22434 0.87394 1.23997 0.95791 0.90344 0.99717 1.21573 1.13076 1.01992 0.91686 1.20108 0.99352 0.84529 0.95226 1.21634 0.99064 0.96426 0.96695 1.20854 0.92527 0.91127 0.92794 0.92759 0.95534 0.90927 0.92461 0.91040 0.88783 0.88167 0.76423 0.83620 0.82085 0.81250 0.78745 0.81545 0.91175 0.93336 0.95846 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.02 24.40 -169.99 -4.15 17.87 16 4 H -0.29 -6.96 6.66 56.52 0.38 -6.58 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.27 -6.59 6.65 56.52 0.38 -6.21 16 7 C -0.26 -7.12 10.00 -15.06 -0.15 -7.27 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 N -0.60 -13.73 2.71 -172.26 -0.47 -14.20 16 10 C 0.13 2.76 4.23 -3.67 -0.02 2.74 16 11 C -0.10 -1.69 5.83 -26.45 -0.15 -1.84 16 12 C -0.10 -1.45 1.94 -154.49 -0.30 -1.75 16 13 C -0.18 -2.25 9.86 -26.79 -0.26 -2.51 16 14 C 0.08 0.97 6.14 -68.01 -0.42 0.55 16 15 H 0.14 1.91 7.40 -51.93 -0.38 1.53 16 16 N -0.69 -7.64 5.30 -55.01 -0.29 -7.93 16 17 C 0.57 7.24 7.77 -12.60 -0.10 7.15 16 18 O -0.53 -8.39 14.76 5.25 0.08 -8.31 16 19 C -0.13 -1.36 6.06 -102.68 -0.62 -1.98 16 20 C -0.04 -0.25 9.63 -38.75 -0.37 -0.63 16 21 C -0.18 -0.97 9.90 -40.14 -0.40 -1.37 16 22 C 0.14 1.00 11.12 -16.73 -0.19 0.81 16 23 N -0.29 -3.10 3.89 -9.42 -0.04 -3.14 16 24 N -0.32 -3.64 12.66 30.50 0.39 -3.26 16 25 C 0.08 0.80 11.95 -17.52 -0.21 0.59 16 26 C -0.25 -3.04 10.17 -39.36 -0.40 -3.44 16 27 C 0.13 1.52 6.85 -82.20 -0.56 0.96 16 28 C -0.10 -1.42 5.37 -26.45 -0.14 -1.57 16 29 C 0.15 2.78 6.52 -3.67 -0.02 2.75 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.03 0.55 7.27 -51.93 -0.38 0.17 16 32 H 0.07 1.70 4.32 -51.93 -0.22 1.47 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 3.40 5.22 -40.82 -0.21 3.19 16 38 H 0.15 0.64 6.49 -52.49 -0.34 0.29 16 39 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 40 H 0.17 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.20 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.17 2.05 7.10 -52.48 -0.37 1.67 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.53 6.75 -51.93 -0.35 0.18 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -35.09 368.49 -8.64 -43.73 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.09 Total: 2.60 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -4.41 Total: -6.21 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.37 Total: -55.24 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.09 -8.64 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016707495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.069 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds