Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47047 * 274.24500 * 3 2 1 5 5 H 1.48492 * 109.47225 * 34.24701 * 3 2 1 6 6 H 1.48506 * 109.47054 * 154.24904 * 3 2 1 7 7 C 1.38809 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00501 * 339.29638 * 7 2 1 9 9 N 1.36942 * 119.99875 * 159.30387 * 7 2 1 10 10 C 1.46848 * 120.37949 * 331.81565 * 9 7 2 11 11 C 1.53351 * 108.81159 * 236.88550 * 10 9 7 12 12 C 1.53188 * 108.76651 * 308.68532 * 11 10 9 13 13 C 1.52845 * 117.65768 * 269.97290 * 12 11 10 14 14 C 1.52815 * 117.71091 * 201.11463 * 12 11 10 15 15 H 1.08996 * 117.50527 * 0.11493 * 14 12 11 16 16 N 1.46497 * 117.50240 * 215.10151 * 14 12 11 17 17 C 1.34770 * 120.00469 * 155.00516 * 16 14 12 18 18 O 1.21636 * 119.99529 * 359.97438 * 17 16 14 19 19 C 1.47262 * 120.00716 * 179.72434 * 17 16 14 20 20 C 1.38938 * 120.90208 * 0.27315 * 19 17 16 21 21 C 1.39762 * 119.18837 * 179.97438 * 20 19 17 22 22 C 1.35067 * 121.27759 * 0.02562 * 21 20 19 23 23 N 1.36229 * 121.76684 * 359.97438 * 22 21 20 24 24 N 1.40085 * 132.48666 * 180.02562 * 23 22 21 25 25 C 1.31347 * 108.88371 * 179.97438 * 24 23 22 26 26 C 1.38876 * 108.94653 * 0.02562 * 25 24 23 27 27 C 1.37180 * 120.19303 * 359.77145 * 23 22 21 28 28 C 1.53183 * 115.07500 * 55.45153 * 12 11 10 29 29 C 1.46839 * 120.38315 * 151.79754 * 9 7 2 30 30 H 0.97001 * 120.00370 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.57522 * 117.09084 * 10 9 7 32 32 H 1.08998 * 109.58061 * 356.68695 * 10 9 7 33 33 H 1.08995 * 109.58889 * 188.90316 * 11 10 9 34 34 H 1.08998 * 109.58558 * 68.47086 * 11 10 9 35 35 H 1.09003 * 117.50303 * 144.81960 * 13 12 11 36 36 H 1.08998 * 117.50571 * 359.76523 * 13 12 11 37 37 H 0.97005 * 119.99975 * 335.00274 * 16 14 12 38 38 H 1.07995 * 120.40177 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.36153 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.11689 * 179.97438 * 22 21 20 41 41 H 1.08000 * 125.52640 * 179.97438 * 25 24 23 42 42 H 1.08007 * 126.21872 * 179.97438 * 26 25 24 43 43 H 1.08998 * 109.59385 * 64.34079 * 28 12 11 44 44 H 1.09002 * 109.58912 * 184.77477 * 28 12 11 45 45 H 1.08993 * 109.58197 * 242.91597 * 29 9 7 46 46 H 1.09004 * 109.58196 * 3.32449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4078 2.0983 -1.3963 5 1 1.4954 2.6251 0.7879 6 1 3.5897 1.4159 0.6083 7 6 2.0101 -1.2021 0.0005 8 1 1.5225 -2.1072 0.3316 9 7 3.3133 -1.2406 -0.4186 10 6 3.8057 -0.2689 -1.4034 11 6 4.3784 -1.0299 -2.6053 12 6 5.3750 -2.0762 -2.0967 13 6 6.8377 -1.6547 -1.9586 14 6 6.4165 -2.6039 -3.0827 15 1 6.3964 -2.2057 -4.0971 16 7 6.8095 -4.0101 -2.9635 17 6 7.2953 -4.6672 -4.0352 18 8 7.4071 -4.0927 -5.1015 19 6 7.6961 -6.0790 -3.9140 20 6 7.5761 -6.7536 -2.7052 21 6 7.9668 -8.0934 -2.6307 22 6 8.4578 -8.7417 -3.7091 23 7 8.5949 -8.1247 -4.9159 24 7 9.0671 -8.5693 -6.1576 25 6 8.9959 -7.5798 -7.0185 26 6 8.4798 -6.4610 -6.3778 27 6 8.2270 -6.8117 -5.0651 28 6 4.8160 -3.0549 -1.0593 29 6 4.2344 -2.2537 0.1118 30 1 -0.4851 0.8400 -0.0004 31 1 4.5867 0.3437 -0.9530 32 1 2.9836 0.3670 -1.7316 33 1 4.8881 -0.3326 -3.2701 34 1 3.5701 -1.5259 -3.1426 35 1 7.4071 -2.0766 -1.1304 36 1 7.0948 -0.6317 -2.2335 37 1 6.7200 -4.4683 -2.1132 38 1 7.1849 -6.2489 -1.8343 39 1 7.8751 -8.6203 -1.6924 40 1 8.7495 -9.7771 -3.6120 41 1 9.2916 -7.6283 -8.0561 42 1 8.3042 -5.4937 -6.8251 43 1 4.0313 -3.6601 -1.5134 44 1 5.6160 -3.7012 -0.6983 45 1 5.0419 -1.7640 0.6560 46 1 3.6944 -2.9241 0.7806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016707495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = 108.669662 kcal Electronic energy + Delta-G solvation = -28829.919389 eV Core-core repulsion = 24915.437976 eV Total energy + Delta-G solvation = -3914.481412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.95269 -41.15700 -39.79611 -38.05877 -37.29324 -34.73737 -33.96219 -33.26099 -32.00883 -31.68617 -30.36211 -29.41893 -26.08664 -25.94572 -24.52220 -23.75116 -23.50036 -22.86535 -22.22045 -21.59060 -19.88983 -18.92108 -18.45170 -18.24706 -17.59055 -17.30274 -16.90351 -16.73230 -16.43117 -15.93313 -15.79343 -15.59874 -15.43303 -15.14244 -14.93707 -14.54292 -14.35473 -14.13830 -13.98985 -13.84039 -13.45996 -13.36844 -13.13802 -12.91889 -12.83751 -12.58401 -12.43484 -12.22908 -12.10335 -11.91251 -11.60657 -11.48908 -11.44194 -11.31884 -11.12577 -10.77084 -10.62993 -10.43614 -9.73047 -8.84277 -8.69580 -8.14739 -5.45482 -0.70702 0.07131 1.17005 1.31728 1.42429 1.51736 1.55604 1.69326 1.96406 2.43676 2.45889 2.94816 3.09099 3.23019 3.33456 3.39408 3.58843 3.71211 3.79468 3.84284 3.92464 3.95735 4.04336 4.32446 4.40358 4.45688 4.53001 4.58459 4.63748 4.73281 4.80124 4.82031 4.88035 4.92091 4.95744 4.97041 5.03616 5.07762 5.13633 5.23770 5.24717 5.32685 5.47990 5.55074 5.55443 5.81035 5.90987 6.15789 6.44585 6.45366 6.96962 7.12520 7.67326 8.07472 9.05277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024539 B = 0.002309 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.762391 B =12123.499027 C =12591.693673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.039 4.039 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.314 1.314 6 H -0.256 1.256 7 C -0.245 4.245 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.093 4.093 12 C -0.118 4.118 13 C -0.161 4.161 14 C 0.084 3.916 15 H 0.119 0.881 16 N -0.677 5.677 17 C 0.568 3.432 18 O -0.571 6.571 19 C -0.168 4.168 20 C -0.006 4.006 21 C -0.167 4.167 22 C 0.130 3.870 23 N -0.294 5.294 24 N -0.343 5.343 25 C 0.084 3.916 26 C -0.293 4.293 27 C 0.112 3.888 28 C -0.087 4.087 29 C 0.146 3.854 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.414 0.586 38 H 0.181 0.819 39 H 0.210 0.790 40 H 0.201 0.799 41 H 0.225 0.775 42 H 0.150 0.850 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.692 -17.237 -4.547 28.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.233 4.233 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.243 1.243 6 H -0.180 1.180 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.344 5.344 10 C 0.002 3.998 11 C -0.132 4.132 12 C -0.120 4.120 13 C -0.199 4.199 14 C -0.022 4.022 15 H 0.137 0.863 16 N -0.328 5.328 17 C 0.357 3.643 18 O -0.451 6.451 19 C -0.173 4.173 20 C -0.029 4.029 21 C -0.188 4.188 22 C 0.005 3.995 23 N -0.061 5.061 24 N -0.166 5.166 25 C -0.093 4.093 26 C -0.321 4.321 27 C -0.007 4.007 28 C -0.126 4.126 29 C 0.022 3.978 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.253 0.747 38 H 0.198 0.802 39 H 0.226 0.774 40 H 0.218 0.782 41 H 0.241 0.759 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.059 0.941 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.048 -18.058 -5.238 29.744 hybrid contribution -0.800 1.866 -0.073 2.031 sum 22.247 -16.192 -5.311 28.024 Atomic orbital electron populations 1.69974 1.07497 1.27098 1.55989 1.25938 0.95810 1.01049 1.00506 0.85893 0.79071 0.80289 0.77178 1.20639 1.24326 1.17984 1.18885 0.87092 0.93350 1.38154 0.93052 1.44432 1.07733 1.36016 1.46192 1.21305 0.96520 0.91967 0.89982 1.21534 0.97515 0.97011 0.97172 1.21795 0.90805 0.99645 0.99738 1.23695 0.95678 1.00297 1.00276 1.21644 1.02562 0.81282 0.96753 0.86294 1.45035 1.63800 1.11068 1.12884 1.17879 0.76867 0.85866 0.83688 1.90767 1.55892 1.69502 1.28948 1.20279 1.09895 0.93837 0.93336 1.22308 0.90128 0.94753 0.95746 1.21259 1.02831 0.94634 1.00050 1.22441 0.95747 1.00943 0.80339 1.46520 1.41680 1.08575 1.09340 1.77776 1.27558 1.23114 0.88118 1.24428 0.94692 0.89351 1.00859 1.21583 1.15639 1.02150 0.92759 1.20389 0.99184 0.85429 0.95694 1.21492 0.99896 0.96196 0.94997 1.21089 0.92038 0.90367 0.94354 0.93115 0.94324 0.93864 0.90423 0.93279 0.86367 0.87575 0.74681 0.80229 0.77357 0.78183 0.75905 0.83212 0.92845 0.88607 0.94070 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.33 13.97 21.65 0.30 -60.03 16 2 C -0.04 -2.24 5.23 84.86 0.44 -1.80 16 3 Si 0.95 46.23 24.40 68.60 1.67 47.90 16 4 H -0.28 -13.05 6.66 99.48 0.66 -12.39 16 5 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 6 H -0.26 -11.72 6.65 99.48 0.66 -11.06 16 7 C -0.24 -13.59 10.00 84.03 0.84 -12.75 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.62 -27.68 2.71 -698.89 -1.89 -29.58 16 10 C 0.13 5.18 4.23 86.43 0.37 5.55 16 11 C -0.09 -3.06 5.83 30.77 0.18 -2.88 16 12 C -0.12 -3.07 1.94 -52.17 -0.10 -3.17 16 13 C -0.16 -3.27 9.86 30.55 0.30 -2.96 16 14 C 0.08 1.93 6.14 44.94 0.28 2.21 16 15 H 0.12 3.24 7.40 -2.39 -0.02 3.22 16 16 N -0.68 -12.98 5.30 -446.20 -2.36 -15.35 16 17 C 0.57 13.85 7.77 86.62 0.67 14.52 16 18 O -0.57 -18.68 14.76 -4.15 -0.06 -18.74 16 19 C -0.17 -3.33 6.06 -18.61 -0.11 -3.44 16 20 C -0.01 -0.06 9.63 22.81 0.22 0.16 16 21 C -0.17 -0.93 9.90 21.91 0.22 -0.71 16 22 C 0.13 1.38 11.12 83.28 0.93 2.30 16 23 N -0.29 -5.95 3.89 -183.71 -0.71 -6.67 16 24 N -0.34 -7.73 12.66 -57.40 -0.73 -8.45 16 25 C 0.08 1.73 11.95 84.92 1.01 2.75 16 26 C -0.29 -7.39 10.17 22.41 0.23 -7.16 16 27 C 0.11 2.69 6.85 40.43 0.28 2.96 16 28 C -0.09 -2.21 5.37 30.77 0.17 -2.04 16 29 C 0.15 4.93 6.52 86.43 0.56 5.50 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 32 H 0.04 2.01 4.32 -2.39 -0.01 2.00 16 33 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 5.05 5.22 -92.70 -0.48 4.57 16 38 H 0.18 0.42 6.49 -2.91 -0.02 0.40 16 39 H 0.21 -0.77 8.06 -2.91 -0.02 -0.79 16 40 H 0.20 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.22 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.15 4.12 7.10 -2.91 -0.02 4.10 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.53 6.75 -2.39 -0.02 1.51 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 2.01 7.92 -2.38 -0.02 1.99 16 Total: -1.00 -83.01 368.49 3.14 -79.87 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.45 Total: 12.01 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 6.48 Total: -0.97 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -5.39 Total: -120.07 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.74 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -83.01 3.14 -79.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016707495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.539 kcal (2) G-P(sol) polarization free energy of solvation -83.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds