Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99582 * 2 1 4 4 H 1.48501 * 109.47151 * 269.99723 * 3 2 1 5 5 H 1.48496 * 109.47320 * 29.99609 * 3 2 1 6 6 H 1.48507 * 109.47218 * 150.00054 * 3 2 1 7 7 C 1.38809 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00072 * 197.85386 * 7 2 1 9 9 N 1.36935 * 120.00031 * 17.85823 * 7 2 1 10 10 C 1.46850 * 120.38275 * 208.91151 * 9 7 2 11 11 C 1.53354 * 108.80968 * 236.87850 * 10 9 7 12 12 C 1.53185 * 108.76553 * 308.68321 * 11 10 9 13 13 C 1.52846 * 117.65815 * 269.97101 * 12 11 10 14 14 C 1.52818 * 117.71096 * 201.11371 * 12 11 10 15 15 H 1.09004 * 117.50335 * 215.12580 * 14 12 11 16 16 N 1.46492 * 117.50290 * 0.14215 * 14 12 11 17 17 C 1.34778 * 120.00011 * 204.99456 * 16 14 12 18 18 O 1.21608 * 120.00094 * 0.02562 * 17 16 14 19 19 C 1.47395 * 120.00157 * 179.97438 * 17 16 14 20 20 N 1.31580 * 126.82022 * 359.97438 * 19 17 16 21 21 N 1.28383 * 111.96515 * 180.02562 * 20 19 17 22 22 H 0.96991 * 124.37419 * 180.02562 * 21 20 19 23 23 C 1.37050 * 111.25680 * 359.97438 * 21 20 19 24 24 C 1.39119 * 134.72973 * 180.02562 * 23 21 20 25 25 C 1.36680 * 119.79112 * 180.02562 * 24 23 21 26 26 C 1.38896 * 120.88936 * 359.97438 * 25 24 23 27 27 C 1.36722 * 120.52711 * 0.02562 * 26 25 24 28 28 C 1.39194 * 119.50879 * 359.95870 * 27 26 25 29 29 C 1.53189 * 115.07845 * 55.44934 * 12 11 10 30 30 C 1.46837 * 120.38323 * 28.88111 * 9 7 2 31 31 H 0.96996 * 120.00053 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.58013 * 117.08148 * 10 9 7 33 33 H 1.09001 * 109.58144 * 356.67277 * 10 9 7 34 34 H 1.08998 * 109.58918 * 188.89490 * 11 10 9 35 35 H 1.09000 * 109.58930 * 68.46287 * 11 10 9 36 36 H 1.09003 * 117.50396 * 144.81438 * 13 12 11 37 37 H 1.09005 * 117.50386 * 359.76641 * 13 12 11 38 38 H 0.97004 * 120.00027 * 25.00182 * 16 14 12 39 39 H 1.08006 * 120.10497 * 0.02562 * 24 23 21 40 40 H 1.07999 * 119.55528 * 179.72660 * 25 24 23 41 41 H 1.08002 * 119.74117 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.24508 * 179.97438 * 27 26 25 43 43 H 1.09000 * 109.58848 * 64.34105 * 29 12 11 44 44 H 1.08997 * 109.58555 * 184.77591 * 29 12 11 45 45 H 1.09007 * 109.58171 * 242.92459 * 30 9 7 46 46 H 1.08997 * 109.58388 * 3.32714 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0513 -1.2244 0.2873 9 7 1.3752 -2.3596 -0.3626 10 6 1.8053 -3.6488 0.1937 11 6 2.1669 -4.5900 -0.9618 12 6 1.0061 -4.6120 -1.9611 13 6 -0.0882 -5.6590 -1.7545 14 6 0.9063 -5.8072 -2.9082 15 1 0.5387 -5.6206 -3.9172 16 7 1.9279 -6.8505 -2.7907 17 6 2.2162 -7.6336 -3.8491 18 8 1.6285 -7.4738 -4.9017 19 6 3.2445 -8.6830 -3.7312 20 7 3.9591 -8.9704 -2.6644 21 7 4.7739 -9.9391 -2.8789 22 1 5.3851 -10.2975 -2.2166 23 6 4.6677 -10.4023 -4.1644 24 6 5.2942 -11.4038 -4.8992 25 6 4.9419 -11.6107 -6.2035 26 6 3.9631 -10.8336 -6.8095 27 6 3.3314 -9.8428 -6.1106 28 6 3.6750 -9.6156 -4.7810 29 6 0.5857 -3.2404 -2.4983 30 6 0.2558 -2.3260 -1.3123 31 1 -0.4850 0.8400 -0.0004 32 1 0.9945 -4.0830 0.7785 33 1 2.6778 -3.4993 0.8297 34 1 2.3356 -5.5951 -0.5753 35 1 3.0688 -4.2306 -1.4573 36 1 -1.1104 -5.3748 -2.0044 37 1 0.0178 -6.3377 -0.9081 38 1 2.3969 -6.9778 -1.9512 39 1 6.0568 -12.0158 -4.4404 40 1 5.4339 -12.3862 -6.7716 41 1 3.6994 -11.0129 -7.8414 42 1 2.5713 -9.2410 -6.5865 43 1 1.4024 -2.8084 -3.0766 44 1 -0.2950 -3.3501 -3.1311 45 1 -0.6511 -2.6783 -0.8206 46 1 0.1084 -1.3061 -1.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016955715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 100.039275 kcal Electronic energy + Delta-G solvation = -28545.966871 eV Core-core repulsion = 24631.111217 eV Total energy + Delta-G solvation = -3914.855654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.78661 -39.80189 -38.26416 -38.08568 -35.45813 -33.32096 -32.63944 -31.55284 -30.55660 -30.19164 -29.86187 -28.23647 -24.83156 -24.31052 -23.58442 -22.70178 -22.43725 -21.64022 -20.67918 -20.17227 -18.57258 -18.16321 -17.83195 -16.89407 -16.33539 -16.12071 -15.94349 -15.60226 -14.85524 -14.56392 -14.53686 -14.33812 -14.05501 -13.95823 -13.48869 -13.32280 -13.08292 -12.65642 -12.55243 -12.36593 -12.21267 -11.62506 -11.59216 -11.57160 -11.30328 -11.27779 -10.95783 -10.72585 -10.48398 -10.40823 -10.29919 -10.21956 -9.93173 -9.65724 -9.60517 -9.32671 -9.14174 -8.56159 -8.42721 -8.34327 -6.61835 -5.76586 -3.19798 0.48924 1.00973 1.62081 2.32593 2.99093 3.09245 3.39513 3.46650 3.47449 3.47870 4.02384 4.13658 4.23019 4.43964 4.51706 4.63217 4.82437 5.01263 5.04622 5.13328 5.17114 5.19673 5.31115 5.41311 5.53624 5.61579 5.66879 5.83061 5.89746 6.06568 6.10354 6.11593 6.13588 6.17451 6.32742 6.42488 6.48137 6.57594 6.64381 6.65740 6.68452 6.73228 6.86818 7.00045 7.33154 7.39922 7.59480 7.70058 7.82051 8.14110 8.48961 9.24259 9.87828 10.44502 11.31066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002138 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.443932 B =13096.060980 C =13406.126228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.150 3.850 11 C -0.098 4.098 12 C -0.095 4.095 13 C -0.181 4.181 14 C 0.067 3.933 15 H 0.135 0.865 16 N -0.680 5.680 17 C 0.607 3.393 18 O -0.531 6.531 19 C 0.009 3.991 20 N -0.205 5.205 21 N -0.414 5.414 22 H 0.447 0.553 23 C 0.063 3.937 24 C -0.121 4.121 25 C -0.083 4.083 26 C -0.141 4.141 27 C -0.041 4.041 28 C -0.109 4.109 29 C -0.106 4.106 30 C 0.173 3.827 31 H 0.254 0.746 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.407 0.593 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.612 -24.725 -9.486 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.038 4.038 15 H 0.153 0.847 16 N -0.329 5.329 17 C 0.391 3.609 18 O -0.405 6.405 19 C -0.163 4.163 20 N -0.035 5.035 21 N -0.134 5.134 22 H 0.293 0.707 23 C -0.050 4.050 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.161 4.161 27 C -0.061 4.061 28 C -0.116 4.116 29 C -0.145 4.145 30 C 0.047 3.953 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.230 -24.113 -9.107 27.058 hybrid contribution 0.942 0.228 0.148 0.981 sum 9.172 -23.886 -8.959 27.109 Atomic orbital electron populations 1.70034 1.05252 1.25488 1.53764 1.25047 0.95259 0.98427 1.00922 0.86310 0.79126 0.83739 0.77708 1.21434 1.21813 1.20477 1.19193 0.92830 0.85042 1.41143 0.91808 1.43981 1.37849 1.01487 1.47863 1.20839 0.97371 0.87023 0.92429 1.21636 0.96213 0.98714 0.97185 1.21971 0.97960 0.91212 0.98466 1.23544 0.96162 1.02557 0.99645 1.21968 0.93099 0.91316 0.97401 0.84737 1.45238 1.39707 1.33670 1.14291 1.16581 0.80681 0.79622 0.84015 1.90787 1.51661 1.69961 1.28103 1.22798 1.01775 1.01328 0.90371 1.72918 1.01896 1.03219 1.25456 1.43019 1.33021 1.26955 1.10381 0.70733 1.19214 0.99984 0.99246 0.86514 1.19776 1.02059 0.97932 0.94501 1.20761 0.96796 0.98977 0.93840 1.20874 0.97858 0.96728 1.00609 1.20452 0.98196 0.96272 0.91227 1.19415 0.99128 0.97609 0.95431 1.21888 0.99735 0.93022 0.99864 1.20769 0.88781 0.98694 0.87064 0.93642 0.96284 0.92763 0.93544 0.91736 0.88165 0.88993 0.75686 0.85393 0.85083 0.85155 0.84223 0.92073 0.92925 0.96330 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.23 55.49 0.62 -25.48 16 2 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 3 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.91 9.54 -15.06 -0.14 -7.05 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.66 2.94 -172.26 -0.51 -15.17 16 10 C 0.15 3.11 6.52 -3.67 -0.02 3.08 16 11 C -0.10 -1.67 5.37 -26.45 -0.14 -1.82 16 12 C -0.09 -1.59 1.94 -154.49 -0.30 -1.89 16 13 C -0.18 -2.67 9.86 -26.79 -0.26 -2.93 16 14 C 0.07 1.02 6.14 -68.01 -0.42 0.60 16 15 H 0.14 2.13 7.40 -51.93 -0.38 1.75 16 16 N -0.68 -9.50 5.34 -54.97 -0.29 -9.80 16 17 C 0.61 9.05 7.81 -12.53 -0.10 8.95 16 18 O -0.53 -9.14 15.97 5.27 0.08 -9.05 16 19 C 0.01 0.12 7.32 -80.76 -0.59 -0.48 16 20 N -0.21 -2.32 11.80 34.46 0.41 -1.92 16 21 N -0.41 -3.53 6.85 32.34 0.22 -3.30 16 22 H 0.45 2.06 8.96 -190.50 -1.71 0.35 16 23 C 0.06 0.60 7.38 -84.21 -0.62 -0.02 16 24 C -0.12 -0.84 10.03 -39.82 -0.40 -1.24 16 25 C -0.08 -0.54 9.96 -39.90 -0.40 -0.94 16 26 C -0.14 -1.10 9.98 -39.89 -0.40 -1.50 16 27 C -0.04 -0.44 9.87 -39.77 -0.39 -0.83 16 28 C -0.11 -1.30 6.34 -105.05 -0.67 -1.96 16 29 C -0.11 -2.02 5.83 -26.45 -0.15 -2.18 16 30 C 0.17 4.09 5.40 -3.68 -0.02 4.07 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 34 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.41 5.18 6.85 -40.82 -0.28 4.90 16 39 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.14 1.53 7.65 -52.49 -0.40 1.13 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -32.74 378.01 -11.53 -44.27 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.62 Total: 4.19 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -5.11 Total: -6.15 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.45 Total: -55.67 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.74 -11.53 -44.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016955715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.313 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds