Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00367 * 2 1 4 4 H 1.48505 * 109.47046 * 269.99954 * 3 2 1 5 5 H 1.48496 * 109.46981 * 29.99582 * 3 2 1 6 6 H 1.48495 * 109.47575 * 149.99959 * 3 2 1 7 7 C 1.38821 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00384 * 197.36422 * 7 2 1 9 9 N 1.36946 * 119.99672 * 17.36074 * 7 2 1 10 10 C 1.46922 * 120.62923 * 27.68248 * 9 7 2 11 11 C 1.53190 * 108.77616 * 126.38954 * 10 9 7 12 12 C 1.53047 * 109.30900 * 54.63426 * 11 10 9 13 13 C 1.53043 * 109.53694 * 298.63408 * 12 11 10 14 14 H 1.08998 * 109.49641 * 301.38145 * 13 12 11 15 15 C 1.52995 * 109.49510 * 181.31897 * 13 12 11 16 16 N 1.46502 * 109.47002 * 175.06352 * 15 13 12 17 17 C 1.34774 * 119.99963 * 179.97438 * 16 15 13 18 18 O 1.21545 * 120.00277 * 0.02562 * 17 16 15 19 19 C 1.47924 * 119.99949 * 180.02562 * 17 16 15 20 20 C 1.38944 * 119.84241 * 180.02562 * 19 17 16 21 21 C 1.40644 * 117.38405 * 179.97438 * 20 19 17 22 22 C 1.40267 * 122.04373 * 180.27009 * 21 20 19 23 23 C 1.36275 * 119.46906 * 180.25714 * 22 21 20 24 24 C 1.39318 * 120.87597 * 359.45978 * 23 22 21 25 25 C 1.36226 * 121.16013 * 0.27972 * 24 23 22 26 26 C 1.40329 * 119.67957 * 359.97438 * 25 24 23 27 27 N 1.33810 * 121.61552 * 180.02562 * 26 25 24 28 28 N 1.28440 * 121.69333 * 180.02562 * 27 26 25 29 29 C 1.46925 * 120.60139 * 207.66125 * 9 7 2 30 30 H 0.96999 * 119.99932 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58836 * 6.60065 * 10 9 7 32 32 H 1.09000 * 109.70348 * 246.24852 * 10 9 7 33 33 H 1.08999 * 109.49737 * 294.68654 * 11 10 9 34 34 H 1.09002 * 109.50041 * 174.58394 * 11 10 9 35 35 H 1.09004 * 109.45743 * 178.61970 * 12 11 10 36 36 H 1.09001 * 109.44812 * 58.64959 * 12 11 10 37 37 H 1.09000 * 109.47528 * 55.06588 * 15 13 12 38 38 H 1.09000 * 109.47559 * 295.06325 * 15 13 12 39 39 H 0.97003 * 120.00167 * 0.02562 * 16 15 13 40 40 H 1.07999 * 121.30409 * 359.97438 * 20 19 17 41 41 H 1.07994 * 120.26358 * 0.02562 * 22 21 20 42 42 H 1.08003 * 119.55703 * 179.73927 * 23 22 21 43 43 H 1.08007 * 119.41698 * 180.29900 * 24 23 22 44 44 H 1.08001 * 120.16228 * 180.02562 * 25 24 23 45 45 H 1.09004 * 109.56118 * 113.80792 * 29 9 7 46 46 H 1.09002 * 109.61811 * 353.38022 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3613 -0.3528 10 6 0.2279 -2.3350 -1.2739 11 6 0.5010 -3.3052 -2.4275 12 6 0.8190 -4.6903 -1.8593 13 6 2.0746 -4.6102 -0.9880 14 1 2.9085 -4.2408 -1.5847 15 6 2.4104 -6.0014 -0.4471 16 7 3.6759 -5.9468 0.2889 17 6 4.1731 -7.0627 0.8582 18 8 3.5717 -8.1144 0.7606 19 6 5.4506 -7.0074 1.6018 20 6 5.9604 -8.1599 2.1870 21 6 7.1786 -8.0486 2.8810 22 6 7.7838 -9.1502 3.5036 23 6 8.9623 -8.9816 4.1667 24 6 9.5780 -7.7332 4.2244 25 6 9.0201 -6.6438 3.6263 26 6 7.8042 -6.7755 2.9381 27 7 7.2222 -5.7316 2.3363 28 7 6.1092 -5.8503 1.7064 29 6 1.8201 -3.6545 0.1819 30 1 -0.4850 0.8400 -0.0004 31 1 0.0985 -1.3268 -1.6673 32 1 -0.6757 -2.6400 -0.7461 33 1 1.3497 -2.9476 -3.0105 34 1 -0.3797 -3.3676 -3.0667 35 1 0.9897 -5.3885 -2.6788 36 1 -0.0203 -5.0365 -1.2560 37 1 2.5030 -6.7015 -1.2775 38 1 1.6156 -6.3332 0.2209 39 1 4.1557 -5.1074 0.3671 40 1 5.4415 -9.1041 2.1118 41 1 7.3177 -10.1234 3.4609 42 1 9.4274 -9.8280 4.6502 43 1 10.5143 -7.6273 4.7523 44 1 9.5115 -5.6836 3.6807 45 1 1.0479 -4.0683 0.8305 46 1 2.7410 -3.5171 0.7485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023523851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 57.423618 kcal Electronic energy + Delta-G solvation = -28347.710916 eV Core-core repulsion = 24431.007309 eV Total energy + Delta-G solvation = -3916.703607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.72198 -39.70987 -38.14964 -37.71592 -34.92950 -34.06225 -33.05142 -32.09749 -30.99895 -30.40972 -30.16825 -26.27340 -25.59943 -25.25758 -24.52721 -22.88620 -22.13501 -21.37430 -20.79503 -19.29363 -19.07500 -18.50862 -17.32518 -16.67785 -16.36877 -15.86407 -15.78515 -15.11857 -15.03991 -14.86580 -14.72464 -14.17174 -14.12680 -13.82989 -13.60316 -13.40051 -12.82748 -12.80006 -12.74458 -12.50249 -12.32113 -12.23884 -12.14689 -11.54935 -11.27756 -11.13672 -10.97618 -10.70135 -10.46354 -10.27660 -10.17801 -10.13624 -10.08539 -9.87177 -9.83366 -9.55207 -9.39664 -9.03342 -8.81822 -8.42586 -6.64382 -5.75186 -3.17484 -0.47995 -0.00725 1.26012 2.02984 2.91458 2.96236 3.41465 3.48277 3.49851 3.55140 3.56320 3.85201 4.07575 4.14142 4.29247 4.52332 4.53919 4.60664 4.69758 5.05038 5.10491 5.19744 5.27326 5.31844 5.36737 5.45785 5.49203 5.64376 5.67834 5.74312 5.80158 5.83336 5.92944 6.01582 6.15313 6.25179 6.32609 6.39138 6.46094 6.63193 6.72155 6.80663 6.88172 6.99149 7.42804 7.47168 7.70784 7.84094 8.05633 8.22702 8.48378 9.24979 9.88240 10.44593 11.33209 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002516 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.093636 B =11126.925617 C =12963.847533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.075 0.925 15 C 0.125 3.875 16 N -0.698 5.698 17 C 0.575 3.425 18 O -0.538 6.538 19 C -0.004 4.004 20 C -0.030 4.030 21 C -0.075 4.075 22 C -0.095 4.095 23 C -0.098 4.098 24 C -0.093 4.093 25 C -0.078 4.078 26 C 0.071 3.929 27 N -0.196 5.196 28 N -0.187 5.187 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.167 0.833 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.147 0.853 45 H 0.019 0.981 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.519 -19.828 5.563 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.139 4.139 14 H 0.094 0.906 15 C 0.002 3.998 16 N -0.349 5.349 17 C 0.358 3.642 18 O -0.415 6.415 19 C -0.138 4.138 20 C -0.060 4.060 21 C -0.083 4.083 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.057 4.057 27 N -0.052 5.052 28 N -0.045 5.045 29 C 0.026 3.974 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.184 0.816 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.165 0.835 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.928 -18.862 5.111 25.211 hybrid contribution 0.580 -0.206 0.418 0.744 sum 16.507 -19.067 5.529 25.819 Atomic orbital electron populations 1.70044 1.05264 1.25442 1.53990 1.25032 0.95275 0.98412 1.00975 0.86291 0.79189 0.83668 0.77674 1.21481 1.21843 1.20333 1.19219 0.92764 0.84815 1.41324 0.91541 1.44042 1.35795 1.01202 1.50276 1.20798 0.88525 0.98440 0.87956 1.22175 1.00104 0.95924 0.99896 1.21341 0.96643 0.97804 0.97924 1.21971 0.98985 0.93380 0.99597 0.90642 1.21590 0.84272 0.98468 0.95513 1.45968 1.24516 1.11647 1.52727 1.17449 0.83177 0.84463 0.79136 1.90790 1.59868 1.29824 1.61041 1.22602 0.98148 0.91902 1.01149 1.22586 0.92782 1.00144 0.90508 1.18828 0.95420 0.95098 0.98958 1.21052 0.95824 0.97771 0.96709 1.21139 0.95012 0.97938 0.97624 1.21121 1.00145 0.92216 0.97889 1.20847 0.92878 1.00462 0.95683 1.20490 0.96811 0.90621 0.97753 1.73935 1.02419 1.25105 1.03780 1.73284 1.01095 1.21687 1.08386 1.20916 0.97619 0.86832 0.92063 0.93689 0.89519 0.96473 0.92714 0.93181 0.93413 0.92445 0.91528 0.91135 0.74757 0.81562 0.84125 0.84604 0.84388 0.83538 0.96360 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 11.19 55.49 0.62 -25.79 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.93 9.58 -15.05 -0.14 -7.08 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -14.78 3.00 -172.32 -0.52 -15.30 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 12 C -0.10 -1.63 5.17 -26.68 -0.14 -1.77 16 13 C -0.12 -1.99 2.37 -90.50 -0.21 -2.21 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 15 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 16 N -0.70 -10.28 5.32 -61.23 -0.33 -10.60 16 17 C 0.58 8.56 7.80 -12.29 -0.10 8.46 16 18 O -0.54 -8.94 16.35 5.33 0.09 -8.86 16 19 C 0.00 -0.06 6.82 -82.89 -0.57 -0.62 16 20 C -0.03 -0.32 9.51 -38.41 -0.37 -0.69 16 21 C -0.07 -0.72 5.75 -106.80 -0.61 -1.34 16 22 C -0.09 -0.60 9.81 -39.53 -0.39 -0.99 16 23 C -0.10 -0.47 9.96 -39.89 -0.40 -0.87 16 24 C -0.09 -0.49 9.94 -39.90 -0.40 -0.88 16 25 C -0.08 -0.60 10.00 -39.52 -0.40 -1.00 16 26 C 0.07 0.77 6.69 -84.79 -0.57 0.21 16 27 N -0.20 -2.69 11.55 32.23 0.37 -2.32 16 28 N -0.19 -2.71 10.70 33.24 0.36 -2.35 16 29 C 0.15 3.16 5.60 -3.71 -0.02 3.14 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.42 6.11 7.03 -40.82 -0.29 5.83 16 40 H 0.17 1.47 7.69 -52.49 -0.40 1.07 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 43 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 44 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 1.08 7.14 -51.93 -0.37 0.71 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -33.04 378.97 -9.73 -42.77 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.42 Total: 2.52 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -4.59 Total: -2.69 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.51 Total: -56.37 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.04 -9.73 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023523851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.198 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds