Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00367 * 2 1 4 4 H 1.48505 * 109.47046 * 269.99954 * 3 2 1 5 5 H 1.48496 * 109.46981 * 29.99582 * 3 2 1 6 6 H 1.48495 * 109.47575 * 149.99959 * 3 2 1 7 7 C 1.38821 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00384 * 197.36422 * 7 2 1 9 9 N 1.36946 * 119.99672 * 17.36074 * 7 2 1 10 10 C 1.46922 * 120.62923 * 27.68248 * 9 7 2 11 11 C 1.53190 * 108.77616 * 126.38954 * 10 9 7 12 12 C 1.53047 * 109.30900 * 54.63426 * 11 10 9 13 13 C 1.53043 * 109.53694 * 298.63408 * 12 11 10 14 14 H 1.08998 * 109.49641 * 301.38145 * 13 12 11 15 15 C 1.52995 * 109.49510 * 181.31897 * 13 12 11 16 16 N 1.46502 * 109.47002 * 175.06352 * 15 13 12 17 17 C 1.34774 * 119.99963 * 179.97438 * 16 15 13 18 18 O 1.21545 * 120.00277 * 0.02562 * 17 16 15 19 19 C 1.47924 * 119.99949 * 180.02562 * 17 16 15 20 20 C 1.38944 * 119.84241 * 180.02562 * 19 17 16 21 21 C 1.40644 * 117.38405 * 179.97438 * 20 19 17 22 22 C 1.40267 * 122.04373 * 180.27009 * 21 20 19 23 23 C 1.36275 * 119.46906 * 180.25714 * 22 21 20 24 24 C 1.39318 * 120.87597 * 359.45978 * 23 22 21 25 25 C 1.36226 * 121.16013 * 0.27972 * 24 23 22 26 26 C 1.40329 * 119.67957 * 359.97438 * 25 24 23 27 27 N 1.33810 * 121.61552 * 180.02562 * 26 25 24 28 28 N 1.28440 * 121.69333 * 180.02562 * 27 26 25 29 29 C 1.46925 * 120.60139 * 207.66125 * 9 7 2 30 30 H 0.96999 * 119.99932 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58836 * 6.60065 * 10 9 7 32 32 H 1.09000 * 109.70348 * 246.24852 * 10 9 7 33 33 H 1.08999 * 109.49737 * 294.68654 * 11 10 9 34 34 H 1.09002 * 109.50041 * 174.58394 * 11 10 9 35 35 H 1.09004 * 109.45743 * 178.61970 * 12 11 10 36 36 H 1.09001 * 109.44812 * 58.64959 * 12 11 10 37 37 H 1.09000 * 109.47528 * 55.06588 * 15 13 12 38 38 H 1.09000 * 109.47559 * 295.06325 * 15 13 12 39 39 H 0.97003 * 120.00167 * 0.02562 * 16 15 13 40 40 H 1.07999 * 121.30409 * 359.97438 * 20 19 17 41 41 H 1.07994 * 120.26358 * 0.02562 * 22 21 20 42 42 H 1.08003 * 119.55703 * 179.73927 * 23 22 21 43 43 H 1.08007 * 119.41698 * 180.29900 * 24 23 22 44 44 H 1.08001 * 120.16228 * 180.02562 * 25 24 23 45 45 H 1.09004 * 109.56118 * 113.80792 * 29 9 7 46 46 H 1.09002 * 109.61811 * 353.38022 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2235 0.2797 9 7 1.3723 -2.3613 -0.3528 10 6 0.2279 -2.3350 -1.2739 11 6 0.5010 -3.3052 -2.4275 12 6 0.8190 -4.6903 -1.8593 13 6 2.0746 -4.6102 -0.9880 14 1 2.9085 -4.2408 -1.5847 15 6 2.4104 -6.0014 -0.4471 16 7 3.6759 -5.9468 0.2889 17 6 4.1731 -7.0627 0.8582 18 8 3.5717 -8.1144 0.7606 19 6 5.4506 -7.0074 1.6018 20 6 5.9604 -8.1599 2.1870 21 6 7.1786 -8.0486 2.8810 22 6 7.7838 -9.1502 3.5036 23 6 8.9623 -8.9816 4.1667 24 6 9.5780 -7.7332 4.2244 25 6 9.0201 -6.6438 3.6263 26 6 7.8042 -6.7755 2.9381 27 7 7.2222 -5.7316 2.3363 28 7 6.1092 -5.8503 1.7064 29 6 1.8201 -3.6545 0.1819 30 1 -0.4850 0.8400 -0.0004 31 1 0.0985 -1.3268 -1.6673 32 1 -0.6757 -2.6400 -0.7461 33 1 1.3497 -2.9476 -3.0105 34 1 -0.3797 -3.3676 -3.0667 35 1 0.9897 -5.3885 -2.6788 36 1 -0.0203 -5.0365 -1.2560 37 1 2.5030 -6.7015 -1.2775 38 1 1.6156 -6.3332 0.2209 39 1 4.1557 -5.1074 0.3671 40 1 5.4415 -9.1041 2.1118 41 1 7.3177 -10.1234 3.4609 42 1 9.4274 -9.8280 4.6502 43 1 10.5143 -7.6273 4.7523 44 1 9.5115 -5.6836 3.6807 45 1 1.0479 -4.0683 0.8305 46 1 2.7410 -3.5171 0.7485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023523851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = 36.102479 kcal Electronic energy + Delta-G solvation = -28348.635470 eV Core-core repulsion = 24431.007309 eV Total energy + Delta-G solvation = -3917.628161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.51065 -40.82068 -39.39579 -38.73334 -36.37839 -34.84495 -34.73534 -32.93235 -32.30331 -31.93540 -31.36124 -27.48858 -27.17233 -26.36382 -25.56792 -23.84910 -23.51992 -22.73959 -22.03689 -20.79668 -19.80308 -19.57297 -18.65768 -18.07290 -17.11707 -16.97765 -16.88454 -16.77780 -16.16833 -15.77299 -15.66028 -15.51042 -15.34457 -15.06121 -14.99560 -14.52218 -14.48573 -14.01989 -13.76787 -13.68106 -13.51846 -13.36532 -13.03573 -13.00694 -12.88357 -12.52491 -12.27934 -12.22997 -11.97031 -11.92170 -11.82755 -11.58935 -11.47126 -11.15857 -11.07813 -10.95102 -10.53870 -10.49597 -10.18736 -9.47146 -8.68601 -7.87457 -5.32738 -1.17877 -0.76683 0.63003 1.20740 1.46256 1.47231 1.56498 1.90626 2.05748 2.50774 2.68180 2.80973 3.17494 3.26489 3.30932 3.44662 3.57992 3.72345 3.81233 3.97011 3.99651 4.05892 4.12349 4.17938 4.40757 4.42245 4.50867 4.55899 4.60117 4.68655 4.74265 4.86260 4.88953 4.90746 5.00222 5.06088 5.10852 5.18499 5.24085 5.31142 5.31876 5.35493 5.43392 5.57042 5.66898 5.69664 5.79152 6.29994 6.39211 6.90832 7.15042 7.35219 7.86166 8.37293 9.18574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.002516 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.093636 B =11126.925617 C =12963.847533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.102 4.102 14 H 0.074 0.926 15 C 0.135 3.865 16 N -0.701 5.701 17 C 0.579 3.421 18 O -0.559 6.559 19 C -0.032 4.032 20 C -0.023 4.023 21 C -0.085 4.085 22 C -0.098 4.098 23 C -0.084 4.084 24 C -0.069 4.069 25 C -0.103 4.103 26 C 0.052 3.948 27 N -0.229 5.229 28 N -0.218 5.218 29 C 0.152 3.848 30 H 0.250 0.750 31 H 0.052 0.948 32 H -0.005 1.005 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.184 0.816 41 H 0.169 0.831 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.152 0.848 45 H 0.009 0.991 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.250 -22.737 6.267 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.122 4.122 14 H 0.092 0.908 15 C 0.011 3.989 16 N -0.351 5.351 17 C 0.363 3.637 18 O -0.438 6.438 19 C -0.166 4.166 20 C -0.053 4.053 21 C -0.093 4.093 22 C -0.117 4.117 23 C -0.103 4.103 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.076 4.076 27 N -0.085 5.085 28 N -0.075 5.075 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.013 0.987 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.251 0.749 40 H 0.201 0.799 41 H 0.187 0.813 42 H 0.195 0.805 43 H 0.193 0.807 44 H 0.170 0.830 45 H 0.026 0.974 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.675 -21.785 5.807 29.275 hybrid contribution -0.090 0.567 0.382 0.689 sum 18.585 -21.218 6.189 28.878 Atomic orbital electron populations 1.70195 1.06626 1.25793 1.55477 1.25781 0.96052 1.01468 1.01369 0.85285 0.78099 0.79595 0.77622 1.21056 1.22139 1.19454 1.19519 0.92936 0.86121 1.40602 0.91713 1.44308 1.35908 1.01996 1.51038 1.20653 0.87564 0.97952 0.89173 1.22007 1.00999 0.95962 0.97985 1.21335 0.96237 0.96835 0.98896 1.21732 0.99323 0.93372 0.97821 0.90810 1.21460 0.84306 0.97162 0.95942 1.45982 1.24464 1.11751 1.52893 1.17625 0.83487 0.83950 0.78676 1.90758 1.60706 1.30341 1.62034 1.22423 0.98138 0.92928 1.03117 1.22821 0.93132 0.99799 0.89536 1.19108 0.95147 0.95797 0.99287 1.21443 0.96386 0.97759 0.96073 1.21693 0.93889 0.98932 0.95778 1.21643 1.00635 0.91318 0.95360 1.21087 0.92373 1.02125 0.96847 1.20925 0.97923 0.90710 0.98004 1.73787 1.02676 1.26954 1.05090 1.73143 1.01993 1.22602 1.09799 1.21014 0.96804 0.85978 0.93593 0.94134 0.92978 0.98728 0.92988 0.90941 0.89762 0.92260 0.89794 0.91475 0.74937 0.79893 0.81343 0.80492 0.80668 0.82986 0.97354 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 11.19 21.65 0.24 -56.49 16 2 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 3 Si 0.97 46.26 29.59 68.60 2.03 48.29 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.26 -14.85 9.58 84.03 0.81 -14.04 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -31.45 3.00 -699.09 -2.09 -33.54 16 10 C 0.17 8.49 5.31 86.36 0.46 8.95 16 11 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.10 -3.37 2.37 -10.72 -0.03 -3.40 16 14 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.13 3.89 5.07 86.38 0.44 4.33 16 16 N -0.70 -21.03 5.32 -465.90 -2.48 -23.51 16 17 C 0.58 17.58 7.80 86.81 0.68 18.26 16 18 O -0.56 -18.57 16.35 -3.86 -0.06 -18.64 16 19 C -0.03 -0.89 6.82 41.62 0.28 -0.61 16 20 C -0.02 -0.49 9.51 23.03 0.22 -0.27 16 21 C -0.08 -1.55 5.75 -21.27 -0.12 -1.67 16 22 C -0.10 -0.90 9.81 22.31 0.22 -0.68 16 23 C -0.08 -0.39 9.96 22.07 0.22 -0.17 16 24 C -0.07 -0.44 9.94 22.06 0.22 -0.22 16 25 C -0.10 -1.45 10.00 22.31 0.22 -1.22 16 26 C 0.05 1.13 6.69 40.27 0.27 1.40 16 27 N -0.23 -6.63 11.55 -51.93 -0.60 -7.22 16 28 N -0.22 -6.72 10.70 -48.74 -0.52 -7.24 16 29 C 0.15 6.46 5.60 86.36 0.48 6.94 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 32 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.41 12.74 7.03 -92.71 -0.65 12.09 16 40 H 0.18 3.06 7.69 -2.91 -0.02 3.04 16 41 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.18 -0.51 8.06 -2.91 -0.02 -0.53 16 43 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 44 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.05 2.06 7.14 -2.39 -0.02 2.04 16 Total: -1.00 -76.46 378.97 2.00 -74.47 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.35 Total: 16.31 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.13 Total: 7.58 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.45 Total: -128.01 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.06 Total: -18.64 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.46 2.00 -74.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023523851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.568 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds