Wall clock time and date at job start Sat Apr 11 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99994 * 2 1 4 4 H 1.48503 * 109.46833 * 90.00596 * 3 2 1 5 5 H 1.48507 * 109.47187 * 210.00022 * 3 2 1 6 6 H 1.48496 * 109.47600 * 330.00123 * 3 2 1 7 7 C 1.38809 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00072 * 192.65161 * 7 2 1 9 9 N 1.36946 * 120.00159 * 12.65659 * 7 2 1 10 10 C 1.46928 * 120.62826 * 31.60537 * 9 7 2 11 11 C 1.53195 * 108.76944 * 126.37176 * 10 9 7 12 12 C 1.53043 * 109.31289 * 54.63859 * 11 10 9 13 13 C 1.53044 * 109.53516 * 298.62961 * 12 11 10 14 14 C 1.46923 * 120.62681 * 211.32992 * 9 7 2 15 15 H 1.09003 * 109.58682 * 113.84332 * 14 9 7 16 16 C 1.52996 * 109.59081 * 353.41795 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.18927 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21545 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.47919 * 119.99483 * 180.02562 * 18 17 16 21 21 C 1.38938 * 119.84104 * 179.72936 * 20 18 17 22 22 C 1.40654 * 117.38630 * 179.74914 * 21 20 18 23 23 C 1.40256 * 122.03316 * 180.19861 * 22 21 20 24 24 C 1.36274 * 119.47184 * 180.32506 * 23 22 21 25 25 C 1.39329 * 120.86997 * 359.97438 * 24 23 22 26 26 C 1.36222 * 121.15985 * 0.02562 * 25 24 23 27 27 C 1.40337 * 119.68331 * 0.02562 * 26 25 24 28 28 N 1.33818 * 121.62442 * 179.97438 * 27 26 25 29 29 N 1.28437 * 121.68686 * 180.02562 * 28 27 26 30 30 H 0.97003 * 119.99928 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.58557 * 246.15683 * 10 9 7 32 32 H 1.09000 * 109.58774 * 6.44305 * 10 9 7 33 33 H 1.09005 * 109.49353 * 174.58411 * 11 10 9 34 34 H 1.09000 * 109.49753 * 294.67904 * 11 10 9 35 35 H 1.08990 * 109.46267 * 58.64943 * 12 11 10 36 36 H 1.09000 * 109.45627 * 178.62743 * 12 11 10 37 37 H 1.09002 * 109.49619 * 181.31839 * 13 12 11 38 38 H 1.09006 * 109.49827 * 301.41779 * 13 12 11 39 39 H 1.08998 * 109.46969 * 180.19473 * 16 14 9 40 40 H 1.08997 * 109.47304 * 300.19101 * 16 14 9 41 41 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 42 42 H 1.08003 * 121.30600 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.27132 * 0.29608 * 23 22 21 44 44 H 1.07999 * 119.56531 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.41711 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.16325 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0705 -1.2136 0.2043 9 7 1.3504 -2.3736 -0.2609 10 6 0.1943 -2.3961 -1.1674 11 6 0.4379 -3.4513 -2.2509 12 6 0.7430 -4.7965 -1.5879 13 6 2.0111 -4.6732 -0.7400 14 6 1.7889 -3.6328 0.3562 15 1 1.0221 -3.9890 1.0442 16 6 3.0970 -3.4035 1.1159 17 7 2.8846 -2.4007 2.1625 18 6 3.9051 -2.0367 2.9642 19 8 5.0018 -2.5402 2.8184 20 6 3.6904 -1.0247 4.0213 21 6 4.7433 -0.6560 4.8496 22 6 4.4830 0.3147 5.8337 23 6 5.4751 0.7613 6.7188 24 6 5.1637 1.6993 7.6569 25 6 3.8744 2.2196 7.7471 26 6 2.8875 1.8078 6.9032 27 6 3.1683 0.8424 5.9241 28 7 2.2284 0.4097 5.0756 29 7 2.4839 -0.4742 4.1794 30 1 -0.4850 0.8401 0.0004 31 1 -0.7052 -2.6494 -0.6062 32 1 0.0730 -1.4162 -1.6293 33 1 -0.4521 -3.5459 -2.8731 34 1 1.2839 -3.1499 -2.8686 35 1 -0.0930 -5.0853 -0.9510 36 1 0.8927 -5.5545 -2.3567 37 1 2.2409 -5.6375 -0.2868 38 1 2.8423 -4.3603 -1.3720 39 1 3.4223 -4.3394 1.5699 40 1 3.8617 -3.0502 0.4242 41 1 2.0093 -1.9992 2.2791 42 1 5.7240 -1.0948 4.7396 43 1 6.4778 0.3647 6.6577 44 1 5.9264 2.0440 8.3395 45 1 3.6535 2.9625 8.4994 46 1 1.8935 2.2216 6.9878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024587127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:06 Heat of formation + Delta-G solvation = 45.791368 kcal Electronic energy + Delta-G solvation = -29692.881684 eV Core-core repulsion = 25775.673665 eV Total energy + Delta-G solvation = -3917.208020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.47806 -40.75764 -39.37471 -38.70142 -35.83808 -34.91754 -34.80803 -33.03709 -32.18444 -31.71107 -31.39732 -27.88676 -26.88458 -26.34677 -25.44644 -23.82236 -23.50238 -22.48910 -21.93036 -20.74149 -19.80841 -19.62221 -18.36498 -17.93659 -17.41843 -17.00116 -16.81259 -16.59544 -16.03488 -15.75011 -15.66272 -15.45260 -15.26538 -14.98436 -14.81783 -14.57619 -14.44746 -14.07926 -13.64935 -13.54296 -13.47490 -13.33405 -13.00641 -12.91653 -12.85694 -12.59295 -12.35571 -12.19647 -12.07707 -11.91092 -11.79038 -11.51709 -11.31711 -11.09462 -10.95144 -10.89437 -10.54378 -10.48304 -9.95376 -9.46349 -8.54247 -7.85262 -5.30307 -1.16019 -0.72358 0.63258 1.26403 1.31231 1.35924 1.40009 2.03746 2.16985 2.45096 2.76091 2.82674 3.20758 3.31622 3.36539 3.47708 3.59222 3.73654 3.86859 3.97673 4.11475 4.16946 4.23589 4.28059 4.41963 4.42683 4.51584 4.56487 4.63999 4.68752 4.75178 4.87462 4.90072 5.00904 5.07628 5.14647 5.23287 5.23372 5.29508 5.29748 5.36170 5.47635 5.52728 5.63669 5.70348 5.73876 5.86049 6.43403 6.52126 7.06939 7.20002 7.41737 7.88639 8.41032 9.19943 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.003560 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.313791 B = 7863.148387 C = 8935.876581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.025 4.025 3 Si 0.930 3.070 4 H -0.303 1.303 5 H -0.278 1.278 6 H -0.288 1.288 7 C -0.233 4.233 8 H 0.058 0.942 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.120 4.120 14 C 0.157 3.843 15 H 0.029 0.971 16 C 0.135 3.865 17 N -0.675 5.675 18 C 0.567 3.433 19 O -0.572 6.572 20 C -0.031 4.031 21 C -0.029 4.029 22 C -0.086 4.086 23 C -0.097 4.097 24 C -0.083 4.083 25 C -0.068 4.068 26 C -0.106 4.106 27 C 0.047 3.953 28 N -0.237 5.237 29 N -0.216 5.216 30 H 0.247 0.753 31 H -0.002 1.002 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.417 0.583 42 H 0.185 0.815 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.179 0.821 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -0.869 14.672 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.222 4.222 3 Si 0.761 3.239 4 H -0.231 1.231 5 H -0.203 1.203 6 H -0.214 1.214 7 C -0.364 4.364 8 H 0.076 0.924 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.051 3.949 15 H 0.047 0.953 16 C 0.011 3.989 17 N -0.323 5.323 18 C 0.351 3.649 19 O -0.453 6.453 20 C -0.165 4.165 21 C -0.059 4.059 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.088 4.088 26 C -0.127 4.127 27 C -0.081 4.081 28 N -0.092 5.092 29 N -0.072 5.072 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.202 0.798 43 H 0.188 0.812 44 H 0.199 0.801 45 H 0.197 0.803 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.886 -1.088 13.976 16.597 hybrid contribution 0.778 1.362 0.015 1.569 sum 9.664 0.274 13.991 17.006 Atomic orbital electron populations 1.70072 1.05803 1.25090 1.55574 1.25391 0.95543 0.99639 1.01604 0.85856 0.78658 0.82850 0.76575 1.23110 1.20330 1.21434 1.19083 0.91073 0.84732 1.41473 0.92415 1.44239 1.34624 1.02948 1.50788 1.20592 0.87562 0.97053 0.89576 1.22043 1.00524 0.96563 0.98192 1.21349 0.97258 0.96517 0.98897 1.21813 0.98360 0.98419 0.97351 1.20835 0.92843 0.87880 0.93305 0.95347 1.21457 0.98027 0.90711 0.88684 1.46046 1.13810 1.40987 1.31468 1.17669 0.84534 0.81410 0.81279 1.90690 1.24664 1.57107 1.72827 1.22583 0.93152 1.00910 0.99894 1.22825 1.00460 0.92421 0.90156 1.19138 0.95392 0.97125 0.97810 1.21442 0.98994 0.97567 0.93566 1.21701 0.97578 0.93871 0.97035 1.21644 0.91930 0.98024 0.97216 1.21082 1.02563 0.95403 0.93645 1.21039 0.91368 0.98458 0.97203 1.73813 1.29093 1.05792 1.00512 1.73249 1.19234 1.03190 1.11569 0.94370 0.98370 0.93171 0.91715 0.93414 0.92583 0.90456 0.89640 0.92462 0.89815 0.92716 0.74497 0.79766 0.81166 0.80056 0.80350 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 11.19 21.65 0.24 -54.30 16 2 C -0.02 -1.41 5.00 84.86 0.42 -0.99 16 3 Si 0.93 48.04 29.57 68.60 2.03 50.07 16 4 H -0.30 -16.33 7.11 99.48 0.71 -15.63 16 5 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 7 C -0.23 -12.53 6.96 84.03 0.58 -11.94 16 8 H 0.06 3.20 5.87 -2.91 -0.02 3.18 16 9 N -0.60 -29.03 2.98 -676.02 -2.01 -31.04 16 10 C 0.18 8.42 5.27 86.36 0.45 8.87 16 11 C -0.13 -4.92 6.08 30.67 0.19 -4.73 16 12 C -0.10 -3.14 5.89 30.62 0.18 -2.96 16 13 C -0.12 -3.80 5.34 30.53 0.16 -3.64 16 14 C 0.16 6.22 2.99 44.83 0.13 6.36 16 15 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 16 C 0.13 5.25 4.42 86.38 0.38 5.63 16 17 N -0.68 -29.15 3.84 -465.91 -1.79 -30.94 16 18 C 0.57 23.87 7.80 86.81 0.68 24.54 16 19 O -0.57 -24.54 16.35 -3.86 -0.06 -24.60 16 20 C -0.03 -1.22 6.82 41.62 0.28 -0.94 16 21 C -0.03 -0.88 9.51 23.03 0.22 -0.66 16 22 C -0.09 -2.27 5.75 -21.28 -0.12 -2.39 16 23 C -0.10 -1.49 9.81 22.30 0.22 -1.27 16 24 C -0.08 -0.82 9.96 22.07 0.22 -0.60 16 25 C -0.07 -0.81 9.94 22.06 0.22 -0.59 16 26 C -0.11 -2.25 10.00 22.31 0.22 -2.03 16 27 C 0.05 1.45 6.69 40.27 0.27 1.72 16 28 N -0.24 -9.46 11.55 -51.93 -0.60 -10.06 16 29 N -0.22 -9.41 10.70 -48.75 -0.52 -9.93 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.05 2.72 6.18 -2.39 -0.01 2.71 16 33 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.05 2.30 7.42 -2.39 -0.02 2.28 16 41 H 0.42 19.97 6.72 -92.71 -0.62 19.35 16 42 H 0.19 4.62 7.69 -2.91 -0.02 4.60 16 43 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 45 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 46 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -75.33 373.40 2.39 -72.93 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.39 Total: 23.47 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 4.72 Total: 14.40 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -4.68 Total: -136.26 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -75.33 2.39 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024587127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.726 kcal (2) G-P(sol) polarization free energy of solvation -75.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds