Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47601 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47211 * 300.00254 * 3 2 1 6 6 H 1.48501 * 109.47296 * 59.99743 * 3 2 1 7 7 C 1.38813 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00382 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00102 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.47539 * 32.33829 * 10 9 7 12 12 C 1.55046 * 110.53711 * 269.51996 * 10 9 7 13 13 C 1.55059 * 102.11127 * 201.32771 * 12 10 9 14 14 C 1.54322 * 103.93367 * 40.05911 * 13 12 10 15 15 H 1.08993 * 112.36115 * 97.60605 * 14 13 12 16 16 C 1.53783 * 109.06321 * 222.03693 * 14 13 12 17 17 N 1.47211 * 106.38460 * 132.42909 * 16 14 13 18 18 C 1.34773 * 126.70578 * 148.72162 * 17 16 14 19 19 O 1.21631 * 119.99540 * 354.67178 * 18 17 16 20 20 C 1.47257 * 119.99896 * 174.67852 * 18 17 16 21 21 C 1.38932 * 120.90566 * 325.71691 * 20 18 17 22 22 C 1.39767 * 119.18673 * 180.02562 * 21 20 18 23 23 C 1.35074 * 121.27768 * 0.02562 * 22 21 20 24 24 N 1.36223 * 121.76912 * 359.95498 * 23 22 21 25 25 N 1.40079 * 132.48721 * 179.97438 * 24 23 22 26 26 C 1.31360 * 108.88606 * 180.02562 * 25 24 23 27 27 C 1.38884 * 108.94139 * 0.02562 * 26 25 24 28 28 C 1.37192 * 120.19091 * 359.74981 * 24 23 22 29 29 C 1.48784 * 107.03316 * 329.13619 * 17 16 14 30 30 C 1.53776 * 105.60077 * 30.42231 * 29 17 16 31 31 H 1.09000 * 111.70334 * 104.09181 * 30 29 17 32 32 H 0.96996 * 119.99792 * 0.02562 * 1 2 3 33 33 H 0.96998 * 120.00017 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.90381 * 319.53150 * 12 10 9 35 35 H 1.09006 * 110.90754 * 83.12599 * 12 10 9 36 36 H 1.09003 * 110.53331 * 281.44513 * 13 12 10 37 37 H 1.08996 * 110.65877 * 158.72803 * 13 12 10 38 38 H 1.09006 * 110.06860 * 251.65845 * 16 14 13 39 39 H 1.08996 * 110.07237 * 13.19230 * 16 14 13 40 40 H 1.07996 * 120.40623 * 0.02562 * 21 20 18 41 41 H 1.08001 * 119.36409 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.11568 * 179.97438 * 23 22 21 43 43 H 1.07996 * 125.53304 * 180.02562 * 26 25 24 44 44 H 1.07994 * 126.21843 * 179.97438 * 27 26 25 45 45 H 1.09005 * 110.05485 * 271.65458 * 29 17 16 46 46 H 1.08991 * 110.84732 * 149.61433 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9960 -3.5556 0.5457 12 6 2.3196 -4.1339 -1.4524 13 6 2.5618 -5.6530 -1.2570 14 6 1.5179 -6.0624 -0.1967 15 1 0.6228 -6.4965 -0.6420 16 6 2.1745 -7.0211 0.8106 17 7 1.8100 -6.5299 2.1496 18 6 1.6294 -7.2737 3.2589 19 8 1.6722 -8.4873 3.1909 20 6 1.3800 -6.6170 4.5531 21 6 1.9760 -5.4008 4.8628 22 6 1.7147 -4.8096 6.1020 23 6 0.8962 -5.3981 7.0011 24 7 0.2879 -6.5897 6.7448 25 7 -0.5849 -7.3873 7.4961 26 6 -0.8927 -8.4559 6.7968 27 6 -0.2382 -8.3979 5.5732 28 6 0.4930 -7.2255 5.5466 29 6 1.6674 -5.0524 2.0480 30 6 1.1945 -4.7805 0.6102 31 1 0.1327 -4.5372 0.5743 32 1 -0.4849 0.8400 -0.0004 33 1 0.3557 -2.3881 -0.0005 34 1 1.4481 -3.9570 -2.0828 35 1 3.2033 -3.6495 -1.8679 36 1 3.5717 -5.8350 -0.8895 37 1 2.3920 -6.1924 -2.1888 38 1 1.7943 -8.0325 0.6668 39 1 3.2575 -7.0072 0.6889 40 1 2.6332 -4.9181 4.1546 41 1 2.1761 -3.8640 6.3455 42 1 0.7189 -4.9106 7.9484 43 1 -1.5484 -9.2505 7.1207 44 1 -0.2940 -9.1333 4.7843 45 1 2.6297 -4.5711 2.2226 46 1 0.9295 -4.6840 2.7605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026302811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 94.697209 kcal Electronic energy + Delta-G solvation = -29397.454450 eV Core-core repulsion = 25482.367147 eV Total energy + Delta-G solvation = -3915.087303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08468 -40.33923 -38.49380 -37.21877 -35.18288 -33.63566 -32.91660 -31.12272 -30.85982 -29.54328 -29.14009 -28.10916 -25.26115 -25.14371 -23.22575 -23.03971 -22.71467 -21.73964 -20.39288 -19.49509 -19.16538 -17.72814 -17.50268 -17.16026 -16.59570 -15.96918 -15.73926 -15.59306 -15.56218 -15.09541 -14.41868 -14.18404 -14.09494 -13.88608 -13.41068 -13.21507 -13.09175 -12.81986 -12.77560 -12.34237 -12.24903 -11.99899 -11.95611 -11.70709 -11.25586 -10.99763 -10.92234 -10.85900 -10.79134 -10.50952 -10.41603 -10.38935 -10.25221 -10.05260 -9.91557 -9.72690 -9.57415 -8.96192 -8.73968 -7.81796 -7.03518 -5.85132 -3.14247 0.19548 0.92332 1.97030 2.50752 2.55959 2.84477 3.31121 3.36826 3.43017 3.45224 4.00119 4.17762 4.32739 4.45839 4.50528 4.61848 4.66400 4.76168 4.87042 5.08476 5.19789 5.26748 5.38049 5.41498 5.43503 5.50507 5.52972 5.59932 5.66458 5.72480 5.77677 5.87057 5.89474 5.91338 5.99018 6.03977 6.04480 6.17959 6.25759 6.35236 6.41771 6.44685 6.58989 6.62319 6.72473 6.95580 7.33788 7.42221 7.62828 8.05084 8.33088 9.44663 10.01509 10.35459 11.37228 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011541 B = 0.003239 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.604508 B = 8641.397302 C =10444.546904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.058 0.942 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.099 4.099 15 H 0.086 0.914 16 C 0.114 3.886 17 N -0.612 5.612 18 C 0.586 3.414 19 O -0.535 6.535 20 C -0.126 4.126 21 C -0.036 4.036 22 C -0.173 4.173 23 C 0.135 3.865 24 N -0.284 5.284 25 N -0.318 5.318 26 C 0.080 3.920 27 C -0.265 4.265 28 C 0.130 3.870 29 C 0.105 3.895 30 C -0.108 4.108 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.170 0.830 43 H 0.194 0.806 44 H 0.160 0.840 45 H 0.078 0.922 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -14.013 8.934 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.155 4.155 14 C -0.118 4.118 15 H 0.105 0.895 16 C -0.008 4.008 17 N -0.345 5.345 18 C 0.374 3.626 19 O -0.413 6.413 20 C -0.131 4.131 21 C -0.059 4.059 22 C -0.195 4.195 23 C 0.010 3.990 24 N -0.051 5.051 25 N -0.141 5.141 26 C -0.098 4.098 27 C -0.294 4.294 28 C 0.011 3.989 29 C -0.017 4.017 30 C -0.128 4.128 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.211 0.789 44 H 0.177 0.823 45 H 0.096 0.904 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.103 -14.022 10.202 17.616 hybrid contribution 0.176 0.711 -0.784 1.073 sum 3.279 -13.311 9.418 16.632 Atomic orbital electron populations 1.69663 1.05107 1.25626 1.57492 1.24737 0.95473 0.97688 1.02873 0.86165 0.78812 0.84245 0.77226 1.20543 1.21890 1.21883 1.19262 0.90985 0.84043 1.42876 0.91120 1.42458 1.05720 0.99694 1.88171 1.21242 0.93616 0.85072 0.92740 0.92377 1.23297 1.01498 0.92905 1.00677 1.22489 0.97593 0.97757 0.97611 1.22568 0.98899 0.94864 0.95502 0.89536 1.22225 0.99441 0.98716 0.80421 1.48896 1.68099 1.08767 1.08775 1.17248 0.77001 0.86046 0.82262 1.90797 1.51675 1.13062 1.85733 1.20288 1.01806 0.96385 0.94628 1.21995 0.95742 0.91593 0.96547 1.20720 1.02039 1.02778 0.93969 1.21545 0.92666 0.83610 1.01216 1.46205 1.31574 1.15396 1.11946 1.77852 1.12445 1.05985 1.17801 1.23912 0.97606 0.95726 0.92576 1.21367 1.06827 0.99892 1.01268 1.20110 0.98027 0.94162 0.86556 1.22808 1.01577 0.78674 0.98629 1.22919 1.01679 0.95597 0.92636 0.89175 0.93509 0.78176 0.91524 0.92086 0.91622 0.92106 0.90419 0.91041 0.82987 0.81963 0.81263 0.78883 0.82267 0.90397 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.14 9.96 -15.06 -0.15 -6.29 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.22 5.21 -51.71 -0.27 -16.49 16 10 C 0.18 3.15 3.03 -66.16 -0.20 2.95 16 11 H 0.06 1.00 7.14 -51.93 -0.37 0.63 16 12 C -0.14 -2.23 6.60 -24.56 -0.16 -2.39 16 13 C -0.12 -1.39 6.35 -24.95 -0.16 -1.55 16 14 C -0.10 -1.21 3.91 -88.53 -0.35 -1.55 16 15 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 16 C 0.11 1.38 6.59 -3.25 -0.02 1.35 16 17 N -0.61 -8.06 3.35 -171.62 -0.58 -8.64 16 18 C 0.59 8.62 7.55 -12.60 -0.10 8.52 16 19 O -0.53 -9.27 16.38 5.25 0.09 -9.18 16 20 C -0.13 -1.68 5.64 -102.68 -0.58 -2.25 16 21 C -0.04 -0.38 8.14 -38.75 -0.32 -0.69 16 22 C -0.17 -1.50 9.90 -40.14 -0.40 -1.90 16 23 C 0.14 1.31 11.12 -16.73 -0.19 1.13 16 24 N -0.28 -3.68 3.89 -9.41 -0.04 -3.72 16 25 N -0.32 -4.22 12.66 30.51 0.39 -3.84 16 26 C 0.08 0.92 11.95 -17.51 -0.21 0.71 16 27 C -0.26 -3.54 10.38 -39.36 -0.41 -3.95 16 28 C 0.13 1.83 6.82 -82.19 -0.56 1.27 16 29 C 0.10 1.35 4.84 -2.38 -0.01 1.34 16 30 C -0.11 -1.54 3.55 -88.53 -0.31 -1.86 16 31 H 0.09 1.41 7.81 -51.93 -0.41 1.01 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.38 9.37 7.61 -40.82 -0.31 9.06 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 39 H 0.07 0.79 7.13 -51.93 -0.37 0.42 16 40 H 0.15 1.41 5.88 -52.49 -0.31 1.10 16 41 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.16 2.10 7.71 -52.49 -0.40 1.69 16 45 H 0.08 0.94 6.35 -51.93 -0.33 0.61 16 46 H 0.08 1.05 6.86 -51.93 -0.36 0.69 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.64 371.68 -9.46 -42.10 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.14 Total: 9.47 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -4.21 Total: -5.57 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.23 Total: -58.64 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -9.46 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026302811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.794 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds