Wall clock time and date at job start Sat Apr 11 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47108 * 89.99909 * 3 2 1 5 5 H 1.48507 * 109.47132 * 330.00202 * 3 2 1 6 6 H 1.48503 * 109.47132 * 210.00002 * 3 2 1 7 7 C 1.38815 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99889 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99796 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99910 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.44016 * 36.10345 * 10 9 7 12 12 C 1.55939 * 110.49250 * 273.54644 * 10 9 7 13 13 C 1.56403 * 105.78658 * 233.78942 * 12 10 9 14 14 C 1.50998 * 101.59401 * 334.98148 * 13 12 10 15 15 H 1.08997 * 110.04071 * 290.65315 * 14 13 12 16 16 C 1.50339 * 125.58604 * 155.44156 * 14 13 12 17 17 N 1.49210 * 104.85795 * 215.65831 * 16 14 13 18 18 C 1.34780 * 126.05588 * 187.08687 * 17 16 14 19 19 O 1.21604 * 119.99907 * 174.71396 * 18 17 16 20 20 C 1.47471 * 120.00221 * 354.71030 * 18 17 16 21 21 C 1.39001 * 120.29062 * 319.24166 * 20 18 17 22 22 C 1.38507 * 120.36197 * 179.74540 * 21 20 18 23 23 C 1.37832 * 120.79105 * 0.55379 * 22 21 20 24 24 C 1.39210 * 120.19345 * 359.70467 * 23 22 21 25 25 N 1.37224 * 133.64582 * 180.02562 * 24 23 22 26 26 H 0.97001 * 125.97724 * 359.96260 * 25 24 23 27 27 N 1.40021 * 108.03500 * 179.97438 * 25 24 23 28 28 C 1.30268 * 109.70585 * 0.02562 * 27 25 24 29 29 C 1.40676 * 119.79613 * 0.02562 * 24 23 22 30 30 C 1.49697 * 107.88723 * 7.06378 * 17 16 14 31 31 C 1.50293 * 110.49566 * 158.80576 * 10 9 7 32 32 H 1.09007 * 109.99904 * 38.17775 * 31 10 9 33 33 H 0.96997 * 119.99950 * 359.97438 * 1 2 3 34 34 H 0.96998 * 119.99540 * 0.02562 * 9 7 2 35 35 H 1.08998 * 110.18950 * 352.86857 * 12 10 9 36 36 H 1.09005 * 110.18901 * 114.63724 * 12 10 9 37 37 H 1.08997 * 111.00443 * 93.05990 * 13 12 10 38 38 H 1.09005 * 111.00424 * 216.86489 * 13 12 10 39 39 H 1.08998 * 110.35897 * 334.50207 * 16 14 13 40 40 H 1.09000 * 110.36056 * 96.80988 * 16 14 13 41 41 H 1.07994 * 119.82148 * 0.02562 * 21 20 18 42 42 H 1.08006 * 119.60373 * 180.26042 * 22 21 20 43 43 H 1.08001 * 119.89879 * 179.72250 * 23 22 21 44 44 H 1.07995 * 125.65071 * 179.97438 * 28 27 25 45 45 H 1.08997 * 110.84363 * 143.32982 * 30 17 16 46 46 H 1.08994 * 110.84149 * 266.94367 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 1.4476 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5880 -3.2130 -0.6012 12 6 4.3062 -2.9892 1.4589 13 6 5.8420 -3.2362 1.6217 14 6 6.2652 -3.4694 0.1912 15 1 5.8665 -4.4188 -0.1663 16 6 7.6471 -3.2508 -0.3591 17 7 7.4311 -2.7453 -1.7463 18 6 8.3876 -2.5374 -2.6727 19 8 8.0787 -2.2131 -3.8033 20 6 9.8087 -2.7030 -2.3154 21 6 10.2812 -2.2477 -1.0900 22 6 11.6146 -2.4072 -0.7508 23 6 12.4975 -3.0077 -1.6224 24 6 12.0556 -3.4692 -2.8592 25 7 12.6741 -4.0926 -3.9136 26 1 13.6130 -4.3314 -3.9633 27 7 11.7129 -4.3232 -4.9053 28 6 10.5560 -3.8750 -4.5083 29 6 10.7036 -3.3207 -3.2183 30 6 5.9637 -2.5107 -1.9268 31 6 5.5121 -2.2702 -0.5073 32 1 5.9080 -1.3215 -0.1448 33 1 -0.4850 0.8400 0.0004 34 1 3.8645 -0.3621 0.0014 35 1 3.9682 -2.2384 2.1732 36 1 3.7571 -3.9196 1.6037 37 1 6.3370 -2.3586 2.0374 38 1 6.0333 -4.1169 2.2349 39 1 8.1794 -2.5090 0.2363 40 1 8.2001 -4.1899 -0.3794 41 1 9.6041 -1.7710 -0.3968 42 1 11.9677 -2.0526 0.2064 43 1 13.5351 -3.1206 -1.3449 44 1 9.6363 -3.9197 -5.0726 45 1 5.7847 -1.6290 -2.5421 46 1 5.4804 -3.3887 -2.3552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026327899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:49 Heat of formation + Delta-G solvation = 96.821680 kcal Electronic energy + Delta-G solvation = -29160.048715 eV Core-core repulsion = 25245.053536 eV Total energy + Delta-G solvation = -3914.995179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88838 -40.64949 -38.79922 -37.20800 -35.49276 -33.49904 -32.93065 -31.21074 -30.68553 -30.23372 -29.11666 -28.77127 -25.74160 -24.64090 -23.10489 -22.83419 -22.45224 -21.90273 -20.38104 -19.98898 -19.29367 -18.02222 -17.53366 -17.40172 -16.49432 -16.37031 -15.55348 -15.49261 -15.14799 -14.93770 -14.76043 -14.69176 -14.25576 -13.87849 -13.64125 -13.61663 -13.11427 -12.69175 -12.54754 -12.40911 -12.27202 -12.07531 -11.97860 -11.76911 -11.56188 -11.30153 -11.16618 -10.88154 -10.83761 -10.70774 -10.51799 -10.42465 -10.06110 -9.98298 -9.80111 -9.58765 -9.07611 -8.95270 -8.76332 -8.42695 -7.29767 -5.78804 -3.14914 0.20683 1.00871 2.16158 2.31787 2.58034 2.72573 3.36610 3.39508 3.43365 3.45171 3.92519 4.15401 4.32270 4.42930 4.54003 4.57554 4.61990 4.73071 4.82591 4.94766 5.12164 5.21999 5.23282 5.27810 5.36555 5.43075 5.46828 5.49935 5.59875 5.66868 5.75094 5.81975 5.85632 5.93123 5.96237 5.98625 6.01058 6.10584 6.15625 6.22079 6.31801 6.33629 6.50505 6.68675 6.86362 6.92113 7.18708 7.37712 7.97199 8.00457 8.40378 9.18150 9.90734 10.09628 11.39416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002595 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.593076 B =10788.272675 C =11181.369427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.201 3.799 11 H 0.063 0.937 12 C -0.142 4.142 13 C -0.097 4.097 14 C -0.128 4.128 15 H 0.085 0.915 16 C 0.119 3.881 17 N -0.618 5.618 18 C 0.571 3.429 19 O -0.530 6.530 20 C -0.042 4.042 21 C -0.124 4.124 22 C -0.072 4.072 23 C -0.125 4.125 24 C 0.122 3.878 25 N -0.508 5.508 26 H 0.442 0.558 27 N -0.250 5.250 28 C 0.088 3.912 29 C -0.137 4.137 30 C 0.129 3.871 31 C -0.123 4.123 32 H 0.081 0.919 33 H 0.259 0.741 34 H 0.361 0.639 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.197 0.803 45 H 0.083 0.917 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.551 -9.466 0.783 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.387 5.387 10 C 0.090 3.910 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.148 4.148 15 H 0.103 0.897 16 C -0.003 4.003 17 N -0.353 5.353 18 C 0.360 3.640 19 O -0.408 6.408 20 C -0.048 4.048 21 C -0.144 4.144 22 C -0.093 4.093 23 C -0.147 4.147 24 C 0.005 3.995 25 N -0.224 5.224 26 H 0.287 0.713 27 N -0.064 5.064 28 C -0.108 4.108 29 C -0.145 4.145 30 C 0.008 3.992 31 C -0.143 4.143 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.194 0.806 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.214 0.786 45 H 0.102 0.898 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 27.821 -9.930 -0.916 29.554 hybrid contribution 0.670 1.551 0.701 1.829 sum 28.491 -8.379 -0.215 29.698 Atomic orbital electron populations 1.69697 1.05121 1.25850 1.57364 1.24675 0.95209 0.97192 1.01951 0.86577 0.79301 0.85106 0.77702 1.21138 1.21755 1.20291 1.19066 0.80537 0.94694 1.43132 0.89134 1.42854 1.04082 1.01768 1.89959 1.20073 0.88241 0.89522 0.93146 0.91893 1.23753 0.93037 1.01344 1.00184 1.21755 0.97358 1.00992 0.93449 1.22202 0.94425 1.00005 0.98119 0.89659 1.21436 0.97500 0.99108 0.82219 1.49793 1.07557 1.64743 1.13198 1.17814 0.84441 0.77664 0.84124 1.90821 1.82746 1.47674 1.19534 1.19390 0.92585 0.98960 0.93854 1.21310 0.96468 1.01275 0.95360 1.20933 0.92519 0.96739 0.99114 1.20209 1.00562 1.02533 0.91375 1.18797 0.92401 0.97161 0.91146 1.46106 1.10891 1.53405 1.11959 0.71313 1.76801 0.98025 1.19740 1.11840 1.24041 0.96988 0.95886 0.93860 1.18647 0.92772 1.06883 0.96212 1.21589 0.78156 1.02164 0.97248 1.22552 0.98605 0.98796 0.94346 0.90064 0.93042 0.80563 0.90663 0.92199 0.91627 0.91893 0.90907 0.90859 0.84441 0.84422 0.85193 0.78584 0.89832 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.76 27.73 -169.99 -4.71 17.04 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.62 10.46 -15.06 -0.16 -6.78 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.54 4.92 -53.21 -0.26 -16.80 16 10 C 0.20 3.46 3.38 -67.71 -0.23 3.23 16 11 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 12 C -0.14 -2.12 6.74 -23.33 -0.16 -2.28 16 13 C -0.10 -1.06 6.72 -25.91 -0.17 -1.24 16 14 C -0.13 -1.38 2.79 -90.27 -0.25 -1.63 16 15 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.12 1.14 5.42 -3.86 -0.02 1.12 16 17 N -0.62 -7.74 3.42 -172.84 -0.59 -8.33 16 18 C 0.57 7.92 7.40 -12.50 -0.09 7.83 16 19 O -0.53 -9.13 16.67 5.27 0.09 -9.04 16 20 C -0.04 -0.48 5.51 -104.68 -0.58 -1.06 16 21 C -0.12 -1.08 8.51 -39.20 -0.33 -1.41 16 22 C -0.07 -0.48 10.00 -39.63 -0.40 -0.87 16 23 C -0.12 -0.86 10.06 -39.37 -0.40 -1.26 16 24 C 0.12 1.15 7.32 -84.17 -0.62 0.54 16 25 N -0.51 -4.47 7.45 32.35 0.24 -4.23 16 26 H 0.44 2.34 8.96 -182.66 -1.64 0.71 16 27 N -0.25 -2.83 12.58 30.81 0.39 -2.44 16 28 C 0.09 1.03 11.48 -17.10 -0.20 0.84 16 29 C -0.14 -1.58 5.96 -106.68 -0.64 -2.22 16 30 C 0.13 1.82 6.80 -3.32 -0.02 1.79 16 31 C -0.12 -1.72 2.38 -90.35 -0.22 -1.94 16 32 H 0.08 1.19 7.92 -51.92 -0.41 0.78 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 34 H 0.36 7.99 5.50 -40.82 -0.22 7.77 16 35 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 6.05 -51.93 -0.31 0.28 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.14 1.03 5.81 -52.49 -0.30 0.73 16 42 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.20 2.18 7.79 -52.49 -0.41 1.77 16 45 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -34.10 371.50 -10.58 -44.68 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.53 Total: 6.87 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -4.57 Total: -5.26 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.55 Total: -59.89 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.10 -10.58 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026327899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.497 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds