Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00151 * 2 1 4 4 H 1.48495 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47013 * 300.00003 * 3 2 1 6 6 H 1.48501 * 109.47033 * 60.00207 * 3 2 1 7 7 C 1.38810 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00041 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00037 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.47584 * 32.33213 * 10 9 7 12 12 C 1.55052 * 110.53271 * 269.51513 * 10 9 7 13 13 C 1.55053 * 102.10825 * 201.32703 * 12 10 9 14 14 C 1.54323 * 103.93432 * 40.05492 * 13 12 10 15 15 H 1.09009 * 112.35580 * 97.61305 * 14 13 12 16 16 C 1.53779 * 109.06550 * 222.02720 * 14 13 12 17 17 N 1.47217 * 106.37790 * 132.42869 * 16 14 13 18 18 C 1.34777 * 126.70290 * 148.72135 * 17 16 14 19 19 O 1.21602 * 119.99918 * 354.67323 * 18 17 16 20 20 C 1.47466 * 119.99879 * 174.67787 * 18 17 16 21 21 C 1.38998 * 120.29565 * 324.88943 * 20 18 17 22 22 C 1.38506 * 120.36727 * 180.02562 * 21 20 18 23 23 C 1.37830 * 120.79022 * 359.97438 * 22 21 20 24 24 C 1.39216 * 120.19497 * 359.97438 * 23 22 21 25 25 N 1.37221 * 133.64510 * 179.97438 * 24 23 22 26 26 H 0.96991 * 125.98068 * 0.02999 * 25 24 23 27 27 N 1.40027 * 108.03241 * 180.02562 * 25 24 23 28 28 C 1.30276 * 109.70374 * 0.02562 * 27 25 24 29 29 C 1.40681 * 119.79073 * 359.75008 * 24 23 22 30 30 C 1.48775 * 107.03686 * 329.14599 * 17 16 14 31 31 C 1.53779 * 105.60400 * 30.42144 * 30 17 16 32 32 H 1.08994 * 111.70823 * 104.09435 * 31 30 17 33 33 H 0.97003 * 119.99291 * 359.97438 * 1 2 3 34 34 H 0.96992 * 120.00108 * 359.97438 * 9 7 2 35 35 H 1.08994 * 110.90483 * 319.53092 * 12 10 9 36 36 H 1.09003 * 110.90230 * 83.12685 * 12 10 9 37 37 H 1.09003 * 110.53316 * 281.44691 * 13 12 10 38 38 H 1.08998 * 110.65940 * 158.73183 * 13 12 10 39 39 H 1.08991 * 110.07967 * 251.65846 * 16 14 13 40 40 H 1.09004 * 110.07428 * 13.20779 * 16 14 13 41 41 H 1.08003 * 119.81719 * 0.02562 * 21 20 18 42 42 H 1.08001 * 119.60257 * 180.02562 * 22 21 20 43 43 H 1.08000 * 119.89762 * 179.97438 * 23 22 21 44 44 H 1.07998 * 125.64258 * 180.02562 * 28 27 25 45 45 H 1.09002 * 110.05574 * 271.64987 * 30 17 16 46 46 H 1.09002 * 110.84932 * 149.60807 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9955 -3.5559 0.5453 12 6 2.3203 -4.1333 -1.4536 13 6 2.5623 -5.6524 -1.2587 14 6 1.5178 -6.0622 -0.1991 15 1 0.6229 -6.4962 -0.6453 16 6 2.1736 -7.0215 0.8080 17 7 1.8083 -6.5308 2.1471 18 6 1.6268 -7.2751 3.2559 19 8 1.6695 -8.4884 3.1875 20 6 1.3765 -6.6180 4.5522 21 6 1.9929 -5.4100 4.8566 22 6 1.7592 -4.7918 6.0738 23 6 0.9141 -5.3597 7.0028 24 6 0.2810 -6.5685 6.7268 25 7 -0.5910 -7.3627 7.4281 26 1 -0.9359 -7.1838 8.3167 27 7 -0.8956 -8.4765 6.6360 28 6 -0.2580 -8.3972 5.5027 29 6 0.5022 -7.2076 5.4932 30 6 1.6658 -5.0533 2.0460 31 6 1.1938 -4.7807 0.6080 32 1 0.1320 -4.5373 0.5716 33 1 -0.4849 0.8401 0.0004 34 1 0.3556 -2.3880 -0.0016 35 1 1.4494 -3.9560 -2.0844 36 1 3.2043 -3.6487 -1.8681 37 1 3.5720 -5.8346 -0.8905 38 1 2.3933 -6.1915 -2.1908 39 1 1.7934 -8.0327 0.6637 40 1 3.2568 -7.0076 0.6872 41 1 2.6578 -4.9508 4.1400 42 1 2.2444 -3.8532 6.2974 43 1 0.7425 -4.8654 7.9476 44 1 -0.3069 -9.1194 4.7012 45 1 2.6280 -4.5721 2.2215 46 1 0.9274 -4.6852 2.7582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026327900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 72.862843 kcal Electronic energy + Delta-G solvation = -29382.846927 eV Core-core repulsion = 25466.812814 eV Total energy + Delta-G solvation = -3916.034112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73056 -40.27300 -38.50020 -37.06105 -35.14127 -33.50132 -32.74429 -31.16691 -30.27434 -29.92540 -29.34866 -28.30962 -25.17150 -24.75979 -22.96628 -22.94774 -22.55443 -21.77488 -20.39150 -19.74473 -19.11611 -17.84455 -17.40678 -17.05183 -16.53214 -15.85386 -15.42869 -15.30432 -15.24706 -14.93891 -14.71839 -14.30417 -14.03909 -13.80709 -13.64653 -13.15752 -13.05768 -12.73554 -12.58740 -12.16323 -12.00203 -11.92483 -11.79681 -11.64935 -11.22626 -11.14528 -10.84723 -10.83033 -10.74504 -10.51767 -10.37814 -10.34196 -10.22115 -10.00671 -9.85142 -9.69044 -8.93308 -8.91303 -8.66433 -8.26408 -7.00309 -5.82371 -3.11196 0.35305 1.18953 2.30347 2.46922 2.69811 2.93046 3.38924 3.45126 3.47175 3.61987 4.18990 4.47604 4.51740 4.57778 4.65793 4.68052 4.75953 4.89541 4.91171 5.01787 5.27700 5.36054 5.44444 5.46085 5.50022 5.54833 5.63410 5.64081 5.72956 5.82293 5.93433 5.94734 6.01009 6.05392 6.09670 6.14544 6.16782 6.22359 6.30346 6.39177 6.48794 6.50220 6.63112 6.75787 6.99175 7.01669 7.33182 7.49008 7.65676 8.09919 8.35981 9.47537 10.04697 10.38705 11.40047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.003250 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.544455 B = 8614.512971 C =10406.144582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.058 0.942 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.099 4.099 15 H 0.086 0.914 16 C 0.113 3.887 17 N -0.611 5.611 18 C 0.575 3.425 19 O -0.541 6.541 20 C -0.049 4.049 21 C -0.117 4.117 22 C -0.071 4.071 23 C -0.122 4.122 24 C 0.120 3.880 25 N -0.509 5.509 26 H 0.441 0.559 27 N -0.252 5.252 28 C 0.088 3.912 29 C -0.135 4.135 30 C 0.107 3.893 31 C -0.109 4.109 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.197 0.803 45 H 0.078 0.922 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -13.541 10.196 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.154 4.154 14 C -0.118 4.118 15 H 0.104 0.896 16 C -0.009 4.009 17 N -0.344 5.344 18 C 0.364 3.636 19 O -0.419 6.419 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.144 4.144 24 C 0.004 3.996 25 N -0.224 5.224 26 H 0.286 0.714 27 N -0.067 5.067 28 C -0.108 4.108 29 C -0.144 4.144 30 C -0.015 4.015 31 C -0.129 4.129 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.214 0.786 45 H 0.096 0.904 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.226 -14.807 10.982 18.569 hybrid contribution 0.432 1.688 -0.043 1.743 sum 2.658 -13.120 10.939 17.287 Atomic orbital electron populations 1.69669 1.05098 1.25571 1.57595 1.24731 0.95468 0.97660 1.02934 0.86166 0.78826 0.84282 0.77199 1.20546 1.21920 1.21898 1.19267 0.90990 0.84063 1.42738 0.91127 1.42454 1.05718 0.99700 1.88150 1.21247 0.93651 0.85080 0.92697 0.92372 1.23294 1.01455 0.92921 1.00707 1.22487 0.97614 0.97742 0.97606 1.22566 0.98844 0.94924 0.95515 0.89599 1.22220 0.99416 0.98653 0.80651 1.48943 1.67756 1.08852 1.08850 1.17813 0.76767 0.86183 0.82855 1.90769 1.52007 1.13210 1.85928 1.19316 0.97736 0.95065 0.93387 1.21406 1.00704 0.93667 0.97969 1.20986 0.96255 0.99472 0.92457 1.20235 0.99469 0.93479 1.01210 1.18793 0.94305 0.94163 0.92389 1.46073 1.40894 1.17753 1.17675 0.71362 1.76773 1.20667 1.05282 1.03972 1.24015 0.94030 0.96810 0.95930 1.18619 1.03447 0.97379 0.94910 1.22792 1.01717 0.78584 0.98390 1.22924 1.01630 0.95526 0.92804 0.89219 0.93547 0.78180 0.91552 0.92127 0.91639 0.92157 0.90480 0.91104 0.84256 0.84199 0.85154 0.78640 0.90433 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.17 9.96 -15.06 -0.15 -6.32 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 9 N -0.72 -16.39 5.21 -51.70 -0.27 -16.66 16 10 C 0.18 3.20 3.03 -66.15 -0.20 3.00 16 11 H 0.06 1.02 7.15 -51.93 -0.37 0.65 16 12 C -0.14 -2.26 6.60 -24.56 -0.16 -2.42 16 13 C -0.12 -1.42 6.35 -24.95 -0.16 -1.57 16 14 C -0.10 -1.23 3.91 -88.53 -0.35 -1.57 16 15 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 16 C 0.11 1.38 6.59 -3.25 -0.02 1.35 16 17 N -0.61 -8.13 3.35 -171.54 -0.57 -8.70 16 18 C 0.57 8.35 7.49 -12.50 -0.09 8.26 16 19 O -0.54 -9.08 16.19 5.28 0.09 -9.00 16 20 C -0.05 -0.65 5.47 -104.68 -0.57 -1.22 16 21 C -0.12 -1.32 8.02 -39.20 -0.31 -1.63 16 22 C -0.07 -0.67 10.00 -39.63 -0.40 -1.07 16 23 C -0.12 -1.13 10.06 -39.37 -0.40 -1.53 16 24 C 0.12 1.37 7.32 -84.17 -0.62 0.75 16 25 N -0.51 -5.30 7.45 32.35 0.24 -5.06 16 26 H 0.44 3.06 8.96 -182.66 -1.64 1.42 16 27 N -0.25 -3.18 12.58 30.81 0.39 -2.80 16 28 C 0.09 1.14 11.41 -17.10 -0.20 0.94 16 29 C -0.13 -1.79 5.96 -106.68 -0.64 -2.42 16 30 C 0.11 1.42 4.83 -2.38 -0.01 1.41 16 31 C -0.11 -1.58 3.55 -88.53 -0.31 -1.89 16 32 H 0.09 1.42 7.81 -51.93 -0.41 1.02 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.38 9.45 7.61 -40.82 -0.31 9.14 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.74 7.19 -51.93 -0.37 0.37 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.95 7.87 -51.93 -0.41 0.55 16 40 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 41 H 0.14 1.45 5.86 -52.48 -0.31 1.14 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.20 2.35 7.60 -52.49 -0.40 1.95 16 45 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 46 H 0.08 1.12 6.89 -51.93 -0.36 0.76 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -31.70 369.96 -10.89 -42.59 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.35 Total: 10.17 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.68 Total: -6.35 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.51 Total: -59.35 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.70 -10.89 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026327900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.448 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds