Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99686 * 2 1 4 4 H 1.48496 * 109.47248 * 270.00013 * 3 2 1 5 5 H 1.48500 * 109.47292 * 30.00266 * 3 2 1 6 6 H 1.48508 * 109.46551 * 150.00067 * 3 2 1 7 7 C 1.38809 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00066 * 359.72188 * 7 2 1 10 10 C 1.46505 * 120.00282 * 180.27563 * 9 7 2 11 11 H 1.09004 * 110.46754 * 32.36112 * 10 9 7 12 12 C 1.56000 * 110.52453 * 269.56968 * 10 9 7 13 13 C 1.55460 * 105.84363 * 248.66360 * 12 10 9 14 14 C 1.51557 * 102.22141 * 24.94467 * 13 12 10 15 15 H 1.08998 * 111.12034 * 71.94030 * 14 13 12 16 16 C 1.51519 * 123.79926 * 208.29349 * 14 13 12 17 17 N 1.49621 * 102.49640 * 151.79128 * 16 14 13 18 18 C 1.34774 * 126.07600 * 154.36813 * 17 16 14 19 19 O 1.21598 * 120.00579 * 175.81913 * 18 17 16 20 20 C 1.47471 * 119.99760 * 355.82057 * 18 17 16 21 21 C 1.39000 * 120.29492 * 35.68722 * 20 18 17 22 22 C 1.38513 * 120.36268 * 179.68188 * 21 20 18 23 23 C 1.37828 * 120.78885 * 0.62211 * 22 21 20 24 24 C 1.39207 * 120.20080 * 359.68094 * 23 22 21 25 25 N 1.37218 * 133.65513 * 180.02562 * 24 23 22 26 26 H 0.97003 * 125.98588 * 359.96925 * 25 24 23 27 27 N 1.40033 * 108.03711 * 179.97438 * 25 24 23 28 28 C 1.30266 * 109.70070 * 359.97438 * 27 25 24 29 29 C 1.40681 * 119.78747 * 359.97438 * 24 23 22 30 30 C 1.49283 * 107.85521 * 334.35154 * 17 16 14 31 31 C 1.49701 * 110.52687 * 155.00347 * 10 9 7 32 32 H 1.09004 * 108.54601 * 196.60330 * 31 10 9 33 33 H 0.96997 * 120.00147 * 359.97438 * 1 2 3 34 34 H 0.97007 * 120.00089 * 0.27892 * 9 7 2 35 35 H 1.08997 * 110.19290 * 7.41209 * 12 10 9 36 36 H 1.09006 * 110.18990 * 129.25422 * 12 10 9 37 37 H 1.09001 * 110.36094 * 266.85395 * 13 12 10 38 38 H 1.09004 * 111.20351 * 143.40871 * 13 12 10 39 39 H 1.08999 * 110.80198 * 270.04436 * 16 14 13 40 40 H 1.09001 * 110.80235 * 33.54355 * 16 14 13 41 41 H 1.07995 * 119.82038 * 359.97438 * 21 20 18 42 42 H 1.07996 * 119.60278 * 180.29798 * 22 21 20 43 43 H 1.07997 * 119.89739 * 179.65847 * 23 22 21 44 44 H 1.08004 * 125.64690 * 180.02562 * 28 27 25 45 45 H 1.09005 * 110.40065 * 234.80764 * 30 17 16 46 46 H 1.08999 * 110.40035 * 112.41146 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 0.0047 10 6 2.0581 -3.6568 0.0102 11 1 2.9958 -3.5532 0.5564 12 6 2.3220 -4.1423 -1.4486 13 6 1.4434 -5.4106 -1.6392 14 6 0.3399 -5.1921 -0.6236 15 1 -0.3367 -4.3996 -0.9433 16 6 -0.4170 -6.3165 0.0536 17 7 -0.8094 -5.7016 1.3600 18 6 -1.8644 -6.0575 2.1195 19 8 -2.0383 -5.5329 3.2027 20 6 -2.8078 -7.0831 1.6370 21 6 -2.3486 -8.1635 0.8926 22 6 -3.2325 -9.1310 0.4443 23 6 -4.5805 -9.0352 0.7154 24 6 -5.0718 -7.9618 1.4531 25 7 -6.3255 -7.5973 1.8752 26 1 -7.1477 -8.0833 1.7056 27 7 -6.2104 -6.4008 2.5936 28 6 -4.9629 -6.0273 2.6275 29 6 -4.1876 -6.9735 1.9227 30 6 0.1754 -4.6242 1.6730 31 6 1.2201 -4.7440 0.6074 32 1 1.8704 -5.5788 0.8692 33 1 -0.4850 0.8400 0.0004 34 1 0.3556 -2.3880 0.0047 35 1 2.0226 -3.3736 -2.1610 36 1 3.3763 -4.3866 -1.5789 37 1 2.0167 -6.3077 -1.4054 38 1 1.0386 -5.4615 -2.6500 39 1 -1.2987 -6.5928 -0.5245 40 1 0.2303 -7.1792 0.2108 41 1 -1.2962 -8.2514 0.6666 42 1 -2.8618 -9.9678 -0.1290 43 1 -5.2576 -9.7950 0.3540 44 1 -4.5844 -5.1406 3.1143 45 1 0.6158 -4.7862 2.6569 46 1 -0.3039 -3.6463 1.6269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026327901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 94.647644 kcal Electronic energy + Delta-G solvation = -29464.037201 eV Core-core repulsion = 25548.947749 eV Total energy + Delta-G solvation = -3915.089453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74499 -40.50589 -38.65101 -37.07489 -35.24214 -33.33116 -32.78975 -30.87999 -30.51944 -30.10246 -28.84135 -28.49111 -25.55028 -24.54134 -23.32121 -22.83757 -22.49674 -21.78976 -20.07722 -19.80290 -18.85074 -17.71452 -17.52721 -17.17473 -16.28899 -16.09698 -15.43806 -15.30875 -14.99320 -14.75303 -14.63785 -14.37026 -14.31632 -13.71307 -13.64390 -13.51879 -12.86684 -12.61153 -12.52831 -12.30244 -12.11364 -11.95589 -11.70465 -11.40775 -11.20395 -11.12056 -10.95270 -10.82678 -10.69498 -10.54522 -10.46448 -10.26923 -10.08566 -9.79730 -9.62351 -9.56819 -8.94328 -8.91081 -8.53089 -8.28613 -6.97037 -5.76512 -3.05770 0.33923 1.13635 2.32334 2.46722 2.76041 2.91938 3.44000 3.49514 3.51362 3.60195 4.10937 4.30399 4.46505 4.57436 4.59470 4.69391 4.73379 4.94509 4.97238 5.11491 5.28993 5.37520 5.39017 5.43063 5.48195 5.57530 5.60004 5.62987 5.79829 5.83679 5.92310 5.95566 6.00143 6.06359 6.15597 6.18031 6.27160 6.29756 6.37830 6.43650 6.47156 6.54117 6.65918 6.81002 7.00743 7.04345 7.34302 7.57462 7.71130 8.20707 8.41531 9.53041 10.09377 10.43867 11.45712 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002960 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.170597 B = 9458.729775 C =10687.505951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.057 0.943 12 C -0.146 4.146 13 C -0.096 4.096 14 C -0.126 4.126 15 H 0.094 0.906 16 C 0.113 3.887 17 N -0.614 5.614 18 C 0.569 3.431 19 O -0.532 6.532 20 C -0.040 4.040 21 C -0.130 4.130 22 C -0.074 4.074 23 C -0.125 4.125 24 C 0.122 3.878 25 N -0.510 5.510 26 H 0.441 0.559 27 N -0.251 5.251 28 C 0.091 3.909 29 C -0.134 4.134 30 C 0.132 3.868 31 C -0.121 4.121 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.200 0.800 45 H 0.071 0.929 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 -22.629 -1.932 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.187 4.187 13 C -0.135 4.135 14 C -0.145 4.145 15 H 0.112 0.888 16 C -0.009 4.009 17 N -0.348 5.348 18 C 0.357 3.643 19 O -0.409 6.409 20 C -0.046 4.046 21 C -0.150 4.150 22 C -0.095 4.095 23 C -0.148 4.148 24 C 0.004 3.996 25 N -0.225 5.225 26 H 0.286 0.714 27 N -0.065 5.065 28 C -0.104 4.104 29 C -0.143 4.143 30 C 0.012 3.988 31 C -0.141 4.141 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.216 0.784 45 H 0.089 0.911 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.338 -21.892 -0.869 23.106 hybrid contribution 0.486 0.444 -0.468 0.808 sum -6.852 -21.449 -1.337 22.556 Atomic orbital electron populations 1.69653 1.05082 1.25706 1.57443 1.24735 0.95465 0.97658 1.02894 0.86224 0.78689 0.84028 0.77427 1.21818 1.21835 1.20779 1.19235 0.90994 0.84086 1.42914 0.91136 1.42429 1.05718 0.99570 1.88165 1.20027 0.93981 0.85267 0.92199 0.92504 1.23707 0.97948 0.96317 1.00732 1.21648 0.95504 0.98678 0.97626 1.22637 0.97317 0.98183 0.96407 0.88805 1.22003 0.99245 0.95716 0.83941 1.49730 1.26847 1.36415 1.21792 1.17776 0.80044 0.82262 0.84171 1.90808 1.74046 1.55272 1.20813 1.19418 0.91451 0.95818 0.97881 1.21405 1.00863 0.94296 0.98432 1.20909 0.91969 0.98374 0.98238 1.20187 0.96159 0.97055 1.01361 1.18797 0.86152 0.96398 0.98209 1.46109 1.06894 1.21246 1.48205 0.71397 1.76819 1.20097 0.97065 1.12516 1.24116 0.88884 0.99845 0.97600 1.18653 0.93014 0.97485 1.05151 1.20995 0.88934 0.91001 0.97888 1.22067 0.96553 1.00889 0.94576 0.91359 0.93486 0.78110 0.90639 0.92785 0.92074 0.92025 0.90081 0.90867 0.84341 0.84529 0.85284 0.78372 0.91052 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -16.86 4.85 -53.45 -0.26 -17.12 16 10 C 0.20 3.56 3.47 -67.96 -0.24 3.33 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.15 -2.28 6.71 -23.82 -0.16 -2.44 16 13 C -0.10 -1.18 6.58 -26.15 -0.17 -1.35 16 14 C -0.13 -1.70 3.07 -89.45 -0.27 -1.97 16 15 H 0.09 1.54 7.88 -51.93 -0.41 1.13 16 16 C 0.11 1.27 4.83 -3.05 -0.01 1.26 16 17 N -0.61 -8.97 3.43 -172.82 -0.59 -9.56 16 18 C 0.57 9.00 7.51 -12.50 -0.09 8.91 16 19 O -0.53 -10.17 16.39 5.28 0.09 -10.08 16 20 C -0.04 -0.52 5.59 -104.68 -0.58 -1.10 16 21 C -0.13 -1.25 7.90 -39.20 -0.31 -1.56 16 22 C -0.07 -0.56 10.00 -39.63 -0.40 -0.95 16 23 C -0.13 -1.01 10.06 -39.37 -0.40 -1.41 16 24 C 0.12 1.33 7.32 -84.17 -0.62 0.72 16 25 N -0.51 -5.29 7.45 32.35 0.24 -5.05 16 26 H 0.44 2.97 8.96 -182.65 -1.64 1.33 16 27 N -0.25 -3.32 12.58 30.81 0.39 -2.93 16 28 C 0.09 1.27 11.42 -17.10 -0.20 1.08 16 29 C -0.13 -1.81 5.95 -106.68 -0.64 -2.44 16 30 C 0.13 2.20 6.67 -4.12 -0.03 2.17 16 31 C -0.12 -1.83 2.26 -91.23 -0.21 -2.03 16 32 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.38 9.73 6.73 -40.82 -0.27 9.46 16 35 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.82 6.61 -51.93 -0.34 0.48 16 40 H 0.07 0.66 7.42 -51.93 -0.39 0.27 16 41 H 0.14 1.10 5.48 -52.49 -0.29 0.81 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.20 2.74 7.63 -52.48 -0.40 2.34 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.09 1.72 7.22 -51.93 -0.37 1.35 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -33.09 370.22 -10.86 -43.95 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.44 Total: 9.87 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.56 Total: -4.80 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.50 Total: -61.63 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.09 -10.86 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026327901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.597 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds