Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47232 * 239.99968 * 3 2 1 5 5 H 1.48508 * 109.46720 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47435 * 119.99584 * 3 2 1 7 7 C 1.38817 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99747 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00152 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.43596 * 32.43460 * 10 9 7 12 12 C 1.55940 * 110.49317 * 269.73357 * 10 9 7 13 13 C 1.56395 * 105.78923 * 233.78973 * 12 10 9 14 14 C 1.51004 * 101.59706 * 334.98014 * 13 12 10 15 15 H 1.08993 * 110.06052 * 290.63555 * 14 13 12 16 16 C 1.50277 * 125.68939 * 156.23319 * 14 13 12 17 17 N 1.49218 * 104.89886 * 215.88526 * 16 14 13 18 18 C 1.34774 * 126.05872 * 186.92294 * 17 16 14 19 19 O 1.21630 * 120.00585 * 184.55026 * 18 17 16 20 20 C 1.47231 * 119.99912 * 4.54630 * 18 17 16 21 21 C 1.38945 * 120.86115 * 319.26138 * 20 18 17 22 22 C 1.39734 * 119.29430 * 180.02562 * 21 20 18 23 23 C 1.35116 * 121.14479 * 0.02648 * 22 21 20 24 24 N 1.36152 * 121.72036 * 359.95392 * 23 22 21 25 25 C 1.36997 * 132.64593 * 180.02562 * 24 23 22 26 26 C 1.34955 * 107.15234 * 179.97438 * 25 24 23 27 27 N 1.33751 * 108.60599 * 0.02562 * 26 25 24 28 28 C 1.31983 * 109.16473 * 359.97438 * 27 26 25 29 29 C 1.49697 * 107.88136 * 6.66291 * 17 16 14 30 30 C 1.50285 * 110.49594 * 154.99725 * 10 9 7 31 31 H 1.08996 * 109.99347 * 39.09723 * 30 10 9 32 32 H 0.96992 * 120.00151 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00121 * 359.97438 * 9 7 2 34 34 H 1.09001 * 110.18527 * 352.87004 * 12 10 9 35 35 H 1.09003 * 110.18817 * 114.62928 * 12 10 9 36 36 H 1.08997 * 111.00507 * 93.06213 * 13 12 10 37 37 H 1.09001 * 111.00046 * 216.86825 * 13 12 10 38 38 H 1.08997 * 110.46258 * 96.96828 * 16 14 13 39 39 H 1.08997 * 110.22787 * 334.68136 * 16 14 13 40 40 H 1.08006 * 120.34892 * 0.02562 * 21 20 18 41 41 H 1.07997 * 119.43017 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.13912 * 179.97438 * 23 22 21 43 43 H 1.07999 * 126.42337 * 359.96565 * 25 24 23 44 44 H 1.07995 * 125.70108 * 179.97438 * 26 25 24 45 45 H 1.08999 * 110.84657 * 143.60268 * 29 17 16 46 46 H 1.09000 * 110.84233 * 267.20886 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9950 -3.5554 0.5484 12 6 2.3252 -4.1330 -1.4602 13 6 1.7641 -5.5906 -1.5419 14 6 1.8378 -6.0257 -0.0978 15 1 2.8783 -6.1445 0.2042 16 6 1.0052 -7.1039 0.5366 17 7 0.7403 -6.6186 1.9226 18 6 0.1397 -7.3170 2.9064 19 8 -0.0956 -6.7843 3.9742 20 6 -0.2318 -8.7250 2.6886 21 6 -0.7745 -9.1399 1.4787 22 6 -1.1158 -10.4841 1.3076 23 6 -0.9275 -11.3843 2.2974 24 7 -0.3989 -11.0261 3.4999 25 6 -0.1149 -11.7352 4.6371 26 6 0.4027 -10.8652 5.5297 27 7 0.4408 -9.6512 4.9697 28 6 -0.0388 -9.7251 3.7423 29 6 1.2656 -5.2209 2.0285 30 6 1.2163 -4.7504 0.5955 31 1 0.1804 -4.6394 0.2753 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.8028 -3.4887 -2.1673 35 1 3.3953 -4.1285 -1.6676 36 1 0.7342 -5.5933 -1.8986 37 1 2.3952 -6.2173 -2.1720 38 1 1.5555 -8.0444 0.5628 39 1 0.0689 -7.2264 -0.0077 40 1 -0.9309 -8.4310 0.6790 41 1 -1.5374 -10.8091 0.3679 42 1 -1.2033 -12.4150 2.1303 43 1 -0.2752 -12.7921 4.7906 44 1 0.7304 -11.1085 6.5296 45 1 0.6197 -4.6105 2.6596 46 1 2.2895 -5.2186 2.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026371949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = 102.761061 kcal Electronic energy + Delta-G solvation = -29089.205661 eV Core-core repulsion = 25174.468033 eV Total energy + Delta-G solvation = -3914.737628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.98818 -40.56663 -38.63467 -37.44495 -35.31387 -33.85422 -33.33554 -30.92797 -30.73822 -29.82126 -28.67487 -28.53051 -25.54172 -25.01983 -23.23163 -22.94680 -22.82773 -22.02005 -20.23216 -19.79246 -19.18733 -18.00376 -17.58316 -17.10346 -16.49222 -16.41580 -16.09824 -15.79630 -15.16698 -14.84799 -14.72474 -14.37433 -13.95084 -13.88282 -13.77885 -13.62451 -13.19937 -12.90637 -12.69693 -12.53653 -12.21902 -12.13709 -11.80631 -11.57013 -11.45657 -11.13166 -11.05776 -10.77524 -10.76127 -10.45159 -10.29768 -10.16661 -10.12465 -9.88774 -9.74808 -9.56035 -9.14952 -8.90358 -8.62003 -8.22608 -6.96705 -5.76210 -3.05430 0.06443 0.94177 2.11292 2.51047 2.71050 2.84125 3.33694 3.45178 3.49990 3.50649 3.79162 3.95846 4.11452 4.29270 4.35884 4.49715 4.58930 4.82135 4.86341 5.07005 5.11089 5.13992 5.21736 5.34515 5.35138 5.44177 5.49525 5.57310 5.58294 5.60796 5.71413 5.85252 5.92730 5.98759 6.01845 6.03442 6.14266 6.22471 6.31427 6.33429 6.35321 6.50163 6.62810 6.67199 6.78060 7.05128 7.49248 7.65261 7.70868 8.17360 8.41990 9.53298 10.09839 10.44179 11.46153 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.002419 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.216660 B =11572.132262 C =12279.792233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.196 3.804 11 H 0.057 0.943 12 C -0.143 4.143 13 C -0.096 4.096 14 C -0.132 4.132 15 H 0.082 0.918 16 C 0.118 3.882 17 N -0.620 5.620 18 C 0.581 3.419 19 O -0.510 6.510 20 C -0.078 4.078 21 C -0.067 4.067 22 C -0.150 4.150 23 C 0.076 3.924 24 N -0.371 5.371 25 C -0.099 4.099 26 C 0.030 3.970 27 N -0.470 5.470 28 C 0.252 3.748 29 C 0.132 3.868 30 C -0.117 4.117 31 H 0.082 0.918 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.183 0.817 45 H 0.086 0.914 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -28.840 -0.408 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.184 4.184 13 C -0.134 4.134 14 C -0.151 4.151 15 H 0.100 0.900 16 C -0.004 4.004 17 N -0.355 5.355 18 C 0.368 3.632 19 O -0.385 6.385 20 C -0.083 4.083 21 C -0.091 4.091 22 C -0.171 4.171 23 C -0.047 4.047 24 N -0.044 5.044 25 C -0.229 4.229 26 C -0.120 4.120 27 N -0.188 5.188 28 C 0.005 3.995 29 C 0.011 3.989 30 C -0.137 4.137 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.202 0.798 44 H 0.200 0.800 45 H 0.105 0.895 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.746 -27.784 0.726 27.803 hybrid contribution -0.211 -0.072 -0.432 0.486 sum -0.956 -27.856 0.294 27.874 Atomic orbital electron populations 1.69643 1.05113 1.25824 1.57440 1.24743 0.95488 0.97704 1.02875 0.86286 0.78543 0.83618 0.77838 1.21301 1.21743 1.21232 1.19197 0.90968 0.84098 1.42982 0.91187 1.42483 1.05692 0.99646 1.88141 1.20087 0.94203 0.85002 0.92221 0.92507 1.23807 0.99994 0.93884 1.00765 1.21732 1.01218 0.97262 0.93193 1.22184 1.00019 0.95134 0.97796 0.89988 1.21432 0.99381 0.97326 0.82219 1.49719 1.58625 1.15877 1.11319 1.17153 0.78316 0.84445 0.83332 1.90878 1.52977 1.69968 1.24654 1.20112 1.04340 0.92435 0.91460 1.21881 0.95197 0.96364 0.95640 1.20653 1.04105 0.92631 0.99750 1.21650 0.97987 1.01301 0.83732 1.42895 1.40358 1.10211 1.10937 1.22685 1.13999 0.99712 0.86467 1.22679 1.00875 0.88109 1.00349 1.70771 1.20766 1.23464 1.03833 1.21525 1.01798 0.82674 0.93494 1.21531 0.99523 0.80243 0.97562 1.22533 1.01734 0.95673 0.93748 0.89974 0.93435 0.78145 0.90735 0.92647 0.91582 0.92167 0.91087 0.91146 0.82801 0.82501 0.81786 0.79771 0.80012 0.89523 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.34 5.10 -53.21 -0.27 -17.61 16 10 C 0.20 3.63 3.41 -67.71 -0.23 3.40 16 11 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 12 C -0.14 -2.27 6.74 -23.33 -0.16 -2.43 16 13 C -0.10 -1.14 6.72 -25.91 -0.17 -1.32 16 14 C -0.13 -1.58 2.76 -90.30 -0.25 -1.82 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.12 1.26 5.18 -3.89 -0.02 1.24 16 17 N -0.62 -8.92 3.42 -172.94 -0.59 -9.51 16 18 C 0.58 9.54 7.54 -12.61 -0.10 9.45 16 19 O -0.51 -10.64 17.30 5.25 0.09 -10.55 16 20 C -0.08 -1.03 5.73 -102.63 -0.59 -1.62 16 21 C -0.07 -0.59 8.56 -38.76 -0.33 -0.92 16 22 C -0.15 -0.88 9.91 -40.13 -0.40 -1.28 16 23 C 0.08 0.48 10.88 -16.74 -0.18 0.30 16 24 N -0.37 -3.73 2.94 -61.10 -0.18 -3.91 16 25 C -0.10 -0.85 11.76 -16.41 -0.19 -1.04 16 26 C 0.03 0.33 11.83 -17.88 -0.21 0.12 16 27 N -0.47 -7.38 11.30 -11.32 -0.13 -7.51 16 28 C 0.25 3.55 7.72 -154.14 -1.19 2.36 16 29 C 0.13 2.11 6.83 -3.31 -0.02 2.09 16 30 C -0.12 -1.82 2.42 -90.34 -0.22 -2.04 16 31 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.38 9.95 7.69 -40.82 -0.31 9.64 16 34 H 0.07 1.36 7.98 -51.93 -0.41 0.94 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 39 H 0.07 0.62 6.28 -51.93 -0.33 0.29 16 40 H 0.15 1.08 5.52 -52.48 -0.29 0.79 16 41 H 0.16 0.35 8.06 -52.49 -0.42 -0.08 16 42 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -36.69 376.00 -10.58 -47.27 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.36 Total: 6.75 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -4.51 Total: -0.65 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.45 Total: -65.76 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.69 -10.58 -47.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026371949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.032 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds