Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48506 * 109.47382 * 269.99698 * 3 2 1 5 5 H 1.48497 * 109.47458 * 30.00149 * 3 2 1 6 6 H 1.48502 * 109.47300 * 149.99980 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21591 * 120.00650 * 359.97438 * 17 16 15 19 19 C 1.47532 * 119.99666 * 179.97438 * 17 16 15 20 20 C 1.39593 * 120.21947 * 359.72263 * 19 17 16 21 21 C 1.37862 * 119.96222 * 179.74386 * 20 19 17 22 22 C 1.38562 * 120.41754 * 0.53261 * 21 20 19 23 23 C 1.37977 * 120.44786 * 359.74655 * 22 21 20 24 24 C 1.39251 * 120.01293 * 359.97119 * 23 22 21 25 25 C 1.48178 * 120.19870 * 180.02562 * 24 23 22 26 26 C 1.40983 * 126.25072 * 129.66666 * 25 24 23 27 27 N 1.30621 * 108.06466 * 179.85692 * 26 25 24 28 28 N 1.39999 * 108.57654 * 0.40373 * 27 26 25 29 29 H 0.97006 * 125.86274 * 179.71419 * 28 27 26 30 30 C 1.34697 * 108.26917 * 359.74387 * 28 27 26 31 31 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 33 33 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 34 34 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 35 35 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 36 36 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 37 37 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 38 38 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 39 39 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 40 40 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 41 41 H 1.08000 * 120.01578 * 359.97438 * 20 19 17 42 42 H 1.07998 * 119.78728 * 180.29921 * 21 20 19 43 43 H 1.08000 * 119.78148 * 179.76217 * 22 21 20 44 44 H 1.07992 * 119.98970 * 179.97438 * 23 22 21 45 45 H 1.07997 * 125.96922 * 0.02715 * 26 25 24 46 46 H 1.07998 * 126.20336 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8073 -4.3733 -3.9572 19 6 4.4468 -6.5330 -3.3445 20 6 4.4174 -7.5307 -2.3686 21 6 5.0427 -8.7376 -2.5988 22 6 5.7116 -8.9650 -3.7908 23 6 5.7563 -7.9888 -4.7648 24 6 5.1261 -6.7651 -4.5539 25 6 5.1711 -5.7139 -5.5973 26 6 4.0681 -5.0023 -6.1118 27 7 4.5107 -4.1630 -7.0095 28 7 5.8993 -4.3093 -7.1107 29 1 6.4815 -3.8109 -7.7054 30 6 6.2881 -5.2615 -6.2409 31 1 -0.4850 0.8401 0.0004 32 1 -0.4235 -1.8601 1.0682 33 1 -0.6985 -2.3866 -0.6197 34 1 0.0111 -4.1106 1.8169 35 1 -1.2711 -4.3837 0.5897 36 1 0.3274 -4.9724 -1.1133 37 1 1.1302 -5.6534 0.3396 38 1 1.6415 -3.6192 -2.4206 39 1 3.1751 -2.9297 -1.8368 40 1 3.0990 -5.7164 -1.2672 41 1 3.9020 -7.3585 -1.4353 42 1 5.0140 -9.5093 -1.8438 43 1 6.2011 -9.9130 -3.9587 44 1 6.2801 -8.1738 -5.6908 45 1 3.0377 -5.1272 -5.8137 46 1 7.2994 -5.6052 -6.0813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027924596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 99.753834 kcal Electronic energy + Delta-G solvation = -29143.867892 eV Core-core repulsion = 25228.999860 eV Total energy + Delta-G solvation = -3914.868032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17262 -39.81713 -38.32777 -37.45138 -34.38725 -32.56990 -32.39473 -31.50629 -31.14123 -29.58312 -28.74567 -28.30369 -25.07000 -24.27977 -23.31312 -22.86438 -21.75173 -20.47524 -20.17734 -19.95628 -19.47509 -18.24931 -17.50882 -16.64510 -15.97086 -15.71710 -15.20690 -15.01596 -14.92123 -14.62585 -14.25126 -14.24913 -13.91137 -13.80874 -13.56145 -13.16277 -13.06795 -12.90573 -12.36849 -12.06555 -11.93675 -11.87365 -11.71859 -11.42730 -11.31603 -10.93378 -10.78844 -10.63028 -10.20415 -10.12771 -10.03762 -9.85706 -9.80011 -9.68582 -9.36082 -9.13203 -9.05669 -8.63412 -8.52207 -7.99552 -6.83405 -5.75479 -3.11924 0.74286 1.09818 2.04855 2.84998 2.99168 3.21866 3.40764 3.46459 3.47672 3.51115 3.85685 4.49754 4.62542 4.67187 4.72352 4.86646 4.88776 5.15621 5.25476 5.32949 5.34565 5.40891 5.50751 5.59924 5.63828 5.69677 5.81468 5.83886 5.93640 6.05765 6.13292 6.14677 6.24294 6.25296 6.38090 6.46856 6.56200 6.63414 6.68574 6.73253 6.77715 6.84230 7.07829 7.32871 7.52991 7.61451 7.80407 7.81890 7.84758 8.26730 8.54666 9.18689 9.79210 10.45950 11.36273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003207 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.470427 B = 8729.049790 C =10429.775583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.111 3.889 16 N -0.718 5.718 17 C 0.546 3.454 18 O -0.522 6.522 19 C -0.126 4.126 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.125 4.125 24 C 0.057 3.943 25 C -0.206 4.206 26 C 0.140 3.860 27 N -0.309 5.309 28 N -0.483 5.483 29 H 0.436 0.564 30 C 0.071 3.929 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.178 0.822 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.158 -20.425 -7.454 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.369 5.369 17 C 0.332 3.668 18 O -0.399 6.399 19 C -0.130 4.130 20 C -0.102 4.102 21 C -0.153 4.153 22 C -0.114 4.114 23 C -0.143 4.143 24 C 0.055 3.945 25 C -0.218 4.218 26 C -0.047 4.047 27 N -0.132 5.132 28 N -0.189 5.189 29 H 0.279 0.721 30 C -0.077 4.077 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.227 0.773 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.195 0.805 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.749 -18.573 -8.845 23.210 hybrid contribution 1.027 0.213 0.730 1.277 sum 11.776 -18.360 -8.115 23.272 Atomic orbital electron populations 1.69936 1.04991 1.25274 1.55984 1.24886 0.95672 0.97820 1.01435 0.86156 0.78703 0.83405 0.77729 1.21400 1.21633 1.20603 1.18981 0.90386 0.82196 1.44566 0.90684 1.44486 1.05859 1.00784 1.80190 1.21467 0.84672 0.90282 0.98900 1.23023 0.97447 0.99600 0.98626 1.22646 0.97102 0.96957 0.99828 1.21132 0.94386 0.88038 0.92143 0.94545 1.22228 0.96656 0.83304 0.99204 1.46122 1.54326 1.18591 1.17892 1.18213 0.79022 0.87078 0.82457 1.90798 1.60431 1.45559 1.43152 1.20095 1.02703 0.94991 0.95197 1.21284 0.97848 0.92913 0.98114 1.21071 0.99096 0.97262 0.97849 1.21218 0.97864 0.98876 0.93440 1.21178 1.00956 0.92532 0.99681 1.18083 0.93774 0.91986 0.90655 1.18668 0.93052 1.05678 1.04439 1.23697 0.99728 0.90838 0.90474 1.77257 0.88300 1.23911 1.23685 1.46073 1.07194 1.32012 1.33630 0.72094 1.22425 0.99245 0.93071 0.92989 0.93616 0.90804 0.95685 0.92328 0.92310 0.91760 0.92432 0.91906 0.91117 0.77290 0.85532 0.85611 0.85751 0.85568 0.80519 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 10.54 55.49 0.58 -26.21 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.44 9.73 -15.06 -0.15 -6.59 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.59 -14.64 3.13 -162.57 -0.51 -15.15 16 10 C 0.17 4.08 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.69 7.10 -24.52 -0.17 -2.86 16 12 C -0.13 -2.08 6.07 -24.83 -0.15 -2.23 16 13 C 0.15 2.97 3.22 -66.95 -0.22 2.76 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 16 N -0.72 -10.81 5.35 -61.35 -0.33 -11.14 16 17 C 0.55 8.65 7.70 -12.47 -0.10 8.55 16 18 O -0.52 -10.05 11.37 5.29 0.06 -9.99 16 19 C -0.13 -1.60 5.90 -104.70 -0.62 -2.22 16 20 C -0.08 -0.81 9.53 -39.21 -0.37 -1.18 16 21 C -0.13 -1.08 10.02 -39.60 -0.40 -1.48 16 22 C -0.10 -0.73 10.02 -39.56 -0.40 -1.13 16 23 C -0.13 -1.13 9.69 -39.30 -0.38 -1.51 16 24 C 0.06 0.69 5.78 -104.53 -0.60 0.08 16 25 C -0.21 -2.75 4.66 -105.36 -0.49 -3.24 16 26 C 0.14 2.19 8.86 -17.03 -0.15 2.04 16 27 N -0.31 -4.89 12.66 30.82 0.39 -4.50 16 28 N -0.48 -5.65 7.32 30.65 0.22 -5.43 16 29 H 0.44 3.52 8.96 -182.67 -1.64 1.89 16 30 C 0.07 0.77 11.87 -16.88 -0.20 0.57 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.96 6.86 -51.93 -0.36 1.60 16 33 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 39 H 0.07 1.59 7.86 -51.93 -0.41 1.18 16 40 H 0.39 4.70 6.28 -40.82 -0.26 4.45 16 41 H 0.13 1.00 6.40 -52.49 -0.34 0.67 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.18 2.80 7.33 -52.49 -0.38 2.41 16 46 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -34.60 375.91 -11.01 -45.61 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.55 Total: 6.10 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.53 Total: -2.36 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.36 Total: -62.42 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.99 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.60 -11.01 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027924596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.367 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds