Wall clock time and date at job start Sat Apr 11 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48505 * 109.47403 * 240.00131 * 3 2 1 5 5 H 1.48497 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47374 * 120.00291 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54920 * 104.83240 * 155.90642 * 10 9 7 12 12 C 1.55152 * 101.58099 * 37.00752 * 11 10 9 13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7 15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7 16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13 18 18 O 1.21706 * 119.99739 * 0.02562 * 17 16 15 19 19 C 1.46655 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.37833 * 126.81716 * 179.69258 * 19 17 16 21 21 N 1.32970 * 107.98714 * 179.83903 * 20 19 17 22 22 C 1.31790 * 109.77426 * 0.43525 * 21 20 19 23 23 C 1.47823 * 125.50727 * 179.74865 * 22 21 20 24 24 C 1.39589 * 120.14726 * 179.70270 * 23 22 21 25 25 C 1.37957 * 119.85286 * 179.78594 * 24 23 22 26 26 C 1.38356 * 120.14461 * 0.48964 * 25 24 23 27 27 C 1.38363 * 120.29357 * 359.74195 * 26 25 24 28 28 C 1.37951 * 120.15044 * 0.02562 * 27 26 25 29 29 N 1.35910 * 108.98712 * 359.73132 * 22 21 20 30 30 H 0.97000 * 126.55363 * 180.02562 * 29 22 21 31 31 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 33 33 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 34 34 H 1.09006 * 111.00080 * 278.93746 * 11 10 9 35 35 H 1.08992 * 111.00261 * 155.08380 * 11 10 9 36 36 H 1.08995 * 110.71985 * 206.13389 * 12 11 10 37 37 H 1.09002 * 110.71934 * 82.86221 * 12 11 10 38 38 H 1.08996 * 109.47658 * 302.38100 * 15 13 9 39 39 H 1.08997 * 109.47163 * 62.38695 * 15 13 9 40 40 H 0.96998 * 120.00190 * 5.09359 * 16 15 13 41 41 H 1.08003 * 126.00961 * 359.96273 * 20 19 17 42 42 H 1.08006 * 120.06957 * 0.02562 * 24 23 22 43 43 H 1.07998 * 119.92492 * 180.22828 * 25 24 23 44 44 H 1.08003 * 119.85444 * 179.75664 * 26 25 24 45 45 H 1.08005 * 119.92466 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.07739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2602 -4.0142 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7108 0.2800 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5261 4.0802 19 6 4.1842 -6.6437 3.4307 20 6 4.7173 -7.0890 4.6212 21 7 5.1792 -8.3210 4.4289 22 6 4.9781 -8.6823 3.1776 23 6 5.3620 -9.9819 2.5869 24 6 5.0884 -10.2500 1.2445 25 6 5.4534 -11.4631 0.6984 26 6 6.0800 -12.4169 1.4806 27 6 6.3497 -12.1594 2.8130 28 6 5.9944 -10.9486 3.3704 29 7 4.3602 -7.6672 2.5181 30 1 4.0934 -7.6620 1.5855 31 1 -0.4851 0.8400 0.0004 32 1 -0.6964 -2.3888 0.6254 33 1 -0.4267 -1.8586 -1.0633 34 1 0.0095 -4.1075 -1.8163 35 1 -1.2700 -4.3841 -0.5872 36 1 1.1287 -5.6529 -0.3433 37 1 0.3305 -4.9732 1.1128 38 1 3.2084 -2.9552 1.8180 39 1 1.6544 -3.5840 2.4160 40 1 3.1586 -5.6938 1.2364 41 1 4.7518 -6.5355 5.5480 42 1 4.5957 -9.5078 0.6340 43 1 5.2456 -11.6704 -0.3410 44 1 6.3602 -13.3666 1.0492 45 1 6.8388 -12.9084 3.4183 46 1 6.2051 -10.7490 4.4107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028172549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:43 Heat of formation + Delta-G solvation = 67.879128 kcal Electronic energy + Delta-G solvation = -28129.221805 eV Core-core repulsion = 24212.971583 eV Total energy + Delta-G solvation = -3916.250222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32469 -39.49792 -39.07434 -37.65288 -34.53158 -33.09520 -32.58166 -32.45314 -31.31076 -29.89756 -29.23819 -28.35131 -25.20512 -24.45544 -23.70359 -23.17694 -22.08600 -21.03363 -20.47968 -20.21554 -19.78528 -18.87636 -17.33221 -16.74344 -16.17806 -16.04466 -15.76741 -15.52755 -15.02449 -14.90723 -14.66462 -14.35751 -14.11192 -13.91161 -13.89410 -13.64186 -13.49649 -13.24846 -12.98828 -12.16926 -11.96845 -11.86047 -11.84673 -11.55548 -11.41461 -11.00989 -10.81917 -10.63332 -10.51262 -10.35809 -10.20716 -10.09938 -9.95647 -9.90628 -9.86835 -9.74052 -9.41809 -8.88764 -8.64795 -8.26133 -6.92216 -5.81845 -3.19241 0.34015 0.94878 1.39945 2.44736 2.64600 3.21373 3.32025 3.37909 3.42668 3.43426 3.48745 3.82364 4.33905 4.43658 4.48958 4.62929 4.69056 4.87054 4.98852 5.05135 5.19600 5.24713 5.30053 5.33326 5.40844 5.48606 5.54304 5.61643 5.71005 5.93913 5.94577 5.99575 6.02776 6.05478 6.13200 6.33021 6.36171 6.43614 6.45864 6.46627 6.58307 6.69091 6.82927 6.94029 7.45146 7.47120 7.54034 7.65840 7.73319 8.18438 8.23237 9.11265 9.71763 10.37975 11.29586 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.002204 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.442623 B =12699.646880 C =13521.552971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.912 3.088 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.108 3.892 16 N -0.720 5.720 17 C 0.586 3.414 18 O -0.522 6.522 19 C -0.069 4.069 20 C 0.069 3.931 21 N -0.478 5.478 22 C 0.268 3.732 23 C -0.019 4.019 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.119 4.119 28 C -0.074 4.074 29 N -0.546 5.546 30 H 0.422 0.578 31 H 0.255 0.745 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.388 0.612 41 H 0.189 0.811 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 -25.223 0.820 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.742 3.258 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.370 5.370 17 C 0.371 3.629 18 O -0.397 6.397 19 C -0.187 4.187 20 C -0.087 4.087 21 N -0.196 5.196 22 C 0.008 3.992 23 C -0.021 4.021 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.094 4.094 29 N -0.151 5.151 30 H 0.261 0.739 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.221 0.779 41 H 0.206 0.794 42 H 0.138 0.862 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.274 -24.726 2.069 26.488 hybrid contribution -0.070 1.150 -1.371 1.791 sum 9.205 -23.575 0.698 25.318 Atomic orbital electron populations 1.69917 1.05033 1.25540 1.55589 1.24908 0.95700 0.97926 1.01227 0.86212 0.78602 0.82963 0.78066 1.21050 1.21506 1.20874 1.18933 0.90379 0.82148 1.45095 0.90649 1.44478 1.05766 1.00670 1.80242 1.21494 0.84599 0.90272 0.98980 1.23010 0.97456 0.99627 0.98618 1.22614 0.97180 0.96853 0.99851 1.21127 0.94379 0.88265 0.91911 0.94596 1.22357 0.97603 0.81916 0.99744 1.46071 1.60699 1.19573 1.10666 1.16830 0.78443 0.84235 0.83365 1.90889 1.57144 1.47976 1.43726 1.21756 1.12956 0.91767 0.92180 1.22912 0.97132 0.91289 0.97321 1.70264 1.22261 1.13464 1.13634 1.21330 0.99186 0.90128 0.88536 1.17638 1.01362 0.89736 0.93366 1.21101 1.00249 0.97879 0.93625 1.21035 0.98875 0.93284 1.00220 1.21338 0.97966 0.99355 0.94173 1.21175 1.00138 0.96963 0.95413 1.21257 0.95625 0.92049 1.00476 1.43397 1.45766 1.13191 1.12792 0.73876 0.93461 0.95601 0.90647 0.92275 0.92277 0.92630 0.91772 0.91103 0.91125 0.77914 0.79432 0.86220 0.85356 0.85626 0.85267 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.53 55.49 0.58 -25.65 16 2 C 0.00 0.00 5.47 -17.44 -0.10 -0.10 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.37 9.76 -15.06 -0.15 -6.52 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.17 3.13 -162.56 -0.51 -14.67 16 10 C 0.17 3.98 5.43 -2.52 -0.01 3.96 16 11 C -0.15 -2.61 7.09 -24.58 -0.17 -2.79 16 12 C -0.13 -2.00 6.10 -24.90 -0.15 -2.15 16 13 C 0.15 2.86 3.22 -66.95 -0.22 2.64 16 14 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 15 C 0.11 2.01 5.07 -4.04 -0.02 1.99 16 16 N -0.72 -10.27 5.32 -61.63 -0.33 -10.60 16 17 C 0.59 9.16 7.79 -12.86 -0.10 9.06 16 18 O -0.52 -10.27 16.90 5.18 0.09 -10.18 16 19 C -0.07 -0.90 7.11 -81.72 -0.58 -1.48 16 20 C 0.07 0.90 11.69 -17.21 -0.20 0.70 16 21 N -0.48 -6.10 10.79 -10.76 -0.12 -6.22 16 22 C 0.27 2.92 7.74 -154.89 -1.20 1.72 16 23 C -0.02 -0.17 5.87 -104.97 -0.62 -0.79 16 24 C -0.11 -0.76 9.69 -39.18 -0.38 -1.14 16 25 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 26 C -0.11 -0.62 10.04 -39.49 -0.40 -1.02 16 27 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 28 C -0.07 -0.61 9.69 -39.18 -0.38 -0.99 16 29 N -0.55 -5.40 5.99 -7.13 -0.04 -5.44 16 30 H 0.42 2.83 7.40 -40.82 -0.30 2.53 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.08 1.96 6.85 -51.93 -0.36 1.60 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.01 7.81 -51.93 -0.41 0.61 16 38 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 39 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 40 H 0.39 4.20 7.58 -40.82 -0.31 3.89 16 41 H 0.19 2.24 8.06 -52.48 -0.42 1.81 16 42 H 0.12 0.60 7.14 -52.48 -0.37 0.23 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.13 0.44 8.06 -52.48 -0.42 0.01 16 45 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 46 H 0.14 1.15 7.82 -52.49 -0.41 0.74 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -33.21 384.98 -11.35 -44.56 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.34 Total: 4.72 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -5.47 Total: 0.86 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.41 Total: -62.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.21 -11.35 -44.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028172549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.442 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds