Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00408 * 2 1 4 4 H 1.48503 * 109.47164 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.46834 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47163 * 120.00006 * 3 2 1 7 7 C 1.38813 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64800 * 359.96532 * 9 7 2 11 11 C 1.54325 * 107.27060 * 181.08646 * 10 9 7 12 12 C 1.55162 * 102.94088 * 22.19431 * 11 10 9 13 13 H 1.09007 * 111.03677 * 82.58327 * 12 11 10 14 14 C 1.52995 * 111.00296 * 206.41986 * 12 11 10 15 15 N 1.46496 * 109.47253 * 178.64945 * 14 12 11 16 16 C 1.34774 * 120.00301 * 179.97438 * 15 14 12 17 17 O 1.21592 * 120.00238 * 0.02562 * 16 15 14 18 18 C 1.47588 * 120.00269 * 179.97438 * 16 15 14 19 19 C 1.39816 * 120.00653 * 180.02562 * 18 16 15 20 20 C 1.36573 * 119.99499 * 179.97438 * 19 18 16 21 21 C 1.39774 * 120.00860 * 359.97438 * 20 19 18 22 22 C 1.47657 * 120.00089 * 180.02562 * 21 20 19 23 23 C 1.36243 * 126.77419 * 0.02562 * 22 21 20 24 24 N 1.33680 * 107.86137 * 179.97438 * 23 22 21 25 25 C 1.30662 * 109.57482 * 359.71991 * 24 23 22 26 26 N 1.34954 * 109.02980 * 0.45290 * 25 24 23 27 27 H 0.97001 * 126.46007 * 179.82896 * 26 25 24 28 28 C 1.39786 * 120.00796 * 0.29591 * 21 20 19 29 29 C 1.36582 * 119.99925 * 359.44257 * 28 21 20 30 30 C 1.47421 * 125.64978 * 179.97438 * 9 7 2 31 31 H 0.97000 * 119.99508 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.87878 * 300.50901 * 10 9 7 33 33 H 1.08998 * 109.88062 * 61.67200 * 10 9 7 34 34 H 1.08992 * 110.72742 * 263.83089 * 11 10 9 35 35 H 1.09004 * 110.71721 * 140.54933 * 11 10 9 36 36 H 1.09000 * 109.47615 * 58.64990 * 14 12 11 37 37 H 1.09002 * 109.47309 * 298.65209 * 14 12 11 38 38 H 0.97002 * 119.99733 * 0.02562 * 15 14 12 39 39 H 1.08006 * 119.99912 * 359.95651 * 19 18 16 40 40 H 1.08009 * 119.99660 * 179.97438 * 20 19 18 41 41 H 1.07997 * 126.07167 * 359.96839 * 23 22 21 42 42 H 1.08004 * 125.48539 * 180.30423 * 25 24 23 43 43 H 1.07994 * 120.00127 * 179.70595 * 28 21 20 44 44 H 1.08004 * 120.00382 * 180.27369 * 29 28 21 45 45 H 1.09000 * 110.36502 * 37.00162 * 30 9 7 46 46 H 1.09000 * 110.46781 * 274.72835 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 0.0007 11 6 -0.4485 -4.0440 0.0282 12 6 0.8523 -4.6559 0.6120 13 1 0.8587 -4.5962 1.7004 14 6 1.0369 -6.1007 0.1438 15 7 2.2885 -6.6340 0.6871 16 6 2.6608 -7.8984 0.4056 17 8 1.9581 -8.5964 -0.2997 18 6 3.9220 -8.4354 0.9525 19 6 4.3086 -9.7469 0.6601 20 6 5.4760 -10.2435 1.1659 21 6 6.2846 -9.4406 1.9754 22 6 7.5470 -9.9775 2.5217 23 6 8.0542 -11.2268 2.3264 24 7 9.2112 -11.3081 2.9912 25 6 9.4547 -10.1709 3.5867 26 7 8.4446 -9.3139 3.3289 27 1 8.3673 -8.4013 3.6482 28 6 5.8956 -8.1313 2.2725 29 6 4.7308 -7.6325 1.7625 30 6 1.9333 -3.7311 -0.0016 31 1 -0.4849 0.8401 0.0004 32 1 -0.5568 -2.0518 0.8845 33 1 -0.5551 -2.0847 -0.9009 34 1 -0.6326 -4.4183 -0.9788 35 1 -1.2980 -4.2512 0.6791 36 1 1.0728 -6.1281 -0.9453 37 1 0.2012 -6.7061 0.4950 38 1 2.8490 -6.0773 1.2501 39 1 3.6839 -10.3673 0.0345 40 1 5.7744 -11.2567 0.9404 41 1 7.6019 -12.0120 1.7389 42 1 10.3234 -9.9527 4.1903 43 1 6.5181 -7.5126 2.9019 44 1 4.4324 -6.6194 1.9885 45 1 2.8337 -3.7405 0.6127 46 1 2.1664 -4.0432 -1.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028906507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 70.342030 kcal Electronic energy + Delta-G solvation = -27618.685249 eV Core-core repulsion = 23702.541826 eV Total energy + Delta-G solvation = -3916.143423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47679 -40.36005 -38.68720 -37.60049 -34.78291 -33.34918 -32.84453 -32.26798 -31.42683 -29.94989 -28.95646 -28.07198 -25.70394 -24.52542 -23.53067 -23.10011 -21.77336 -21.24074 -20.62983 -19.97700 -19.84069 -19.09754 -17.90818 -16.83258 -16.28536 -15.86527 -15.60937 -15.48607 -15.12743 -15.10332 -14.67584 -14.49518 -14.31078 -14.16654 -13.83528 -13.76105 -13.45674 -13.31283 -12.85291 -12.49412 -12.38873 -12.03679 -11.77632 -11.51503 -11.39530 -10.94670 -10.81889 -10.61809 -10.54681 -10.47321 -10.22114 -10.08921 -10.00067 -9.93107 -9.82399 -9.69329 -9.51014 -9.04572 -8.63714 -8.27006 -6.87527 -5.75043 -3.08867 0.12523 1.00871 1.68279 2.53752 2.58403 2.90055 3.12262 3.36697 3.41066 3.42611 3.62479 4.05452 4.25774 4.31382 4.44639 4.45666 4.61301 4.79718 4.90665 4.94425 5.04086 5.08981 5.19578 5.30918 5.37403 5.48591 5.50093 5.56858 5.64401 5.83835 5.85686 5.95808 6.01730 6.05028 6.05882 6.18721 6.30035 6.35213 6.42672 6.43732 6.49482 6.63572 6.81998 6.86136 7.46188 7.51437 7.53535 7.59782 7.78796 8.14276 8.22277 9.18078 9.78487 10.44532 11.36549 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002037 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.205964 B =13743.379557 C =15540.374935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.718 5.718 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.131 4.131 19 C -0.050 4.050 20 C -0.111 4.111 21 C 0.012 3.988 22 C 0.006 3.994 23 C 0.007 3.993 24 N -0.495 5.495 25 C 0.197 3.803 26 N -0.563 5.563 27 H 0.422 0.578 28 C -0.128 4.128 29 C -0.075 4.075 30 C 0.142 3.858 31 H 0.253 0.747 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.175 0.825 42 H 0.212 0.788 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.034 0.966 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.310 -20.029 7.560 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.369 5.369 16 C 0.341 3.659 17 O -0.419 6.419 18 C -0.134 4.134 19 C -0.069 4.069 20 C -0.130 4.130 21 C 0.010 3.990 22 C -0.109 4.109 23 C -0.143 4.143 24 N -0.213 5.213 25 C -0.086 4.086 26 N -0.166 5.166 27 H 0.261 0.739 28 C -0.147 4.147 29 C -0.093 4.093 30 C 0.016 3.984 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.193 0.807 42 H 0.228 0.772 43 H 0.140 0.860 44 H 0.150 0.850 45 H 0.052 0.948 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.247 -20.979 7.080 25.801 hybrid contribution 0.266 2.519 0.497 2.581 sum 13.512 -18.460 7.577 24.099 Atomic orbital electron populations 1.69953 1.04874 1.25182 1.56851 1.24815 0.95742 0.97702 1.02211 0.86196 0.78454 0.83203 0.77863 1.21169 1.21567 1.21206 1.18993 0.90350 0.82449 1.44092 0.90577 1.44465 1.01740 0.99807 1.87206 1.21155 0.84286 0.88180 1.01144 1.22862 0.95377 0.99383 0.99735 1.22632 0.98742 0.91964 1.00511 0.90218 1.21443 0.84886 0.93826 0.98964 1.46007 1.24973 1.13449 1.52516 1.18179 0.85268 0.81826 0.80619 1.90781 1.54532 1.58488 1.38105 1.20121 0.96147 0.95712 1.01469 1.20977 0.95311 0.94005 0.96598 1.20799 0.94260 1.00159 0.97767 1.18097 0.90961 0.93600 0.96350 1.19688 0.94096 0.94626 1.02474 1.22498 0.93621 0.95418 1.02798 1.70200 1.16432 1.22543 1.12132 1.25102 0.94529 0.86004 1.02986 1.43353 1.18426 1.15519 1.39339 0.73922 1.20737 0.97583 0.94716 1.01647 1.21008 0.93716 0.99517 0.95107 1.21562 0.93873 0.86230 0.96756 0.93666 0.93532 0.93864 0.92132 0.91918 0.91126 0.91445 0.76382 0.83998 0.84661 0.80745 0.77164 0.86029 0.85031 0.94824 0.96272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.31 55.49 0.57 -26.18 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.61 -15.06 3.39 -170.06 -0.58 -15.64 16 10 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 11 C -0.13 -2.39 6.42 -24.89 -0.16 -2.55 16 12 C -0.12 -1.89 3.11 -88.46 -0.27 -2.17 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 1.85 5.12 -4.05 -0.02 1.83 16 15 N -0.72 -8.91 5.36 -61.34 -0.33 -9.24 16 16 C 0.55 7.40 7.76 -12.45 -0.10 7.30 16 17 O -0.54 -9.00 16.33 5.28 0.09 -8.91 16 18 C -0.13 -1.40 5.88 -104.90 -0.62 -2.02 16 19 C -0.05 -0.48 9.53 -39.59 -0.38 -0.86 16 20 C -0.11 -0.88 9.52 -39.61 -0.38 -1.26 16 21 C 0.01 0.09 5.88 -104.90 -0.62 -0.52 16 22 C 0.01 0.04 6.96 -82.08 -0.57 -0.53 16 23 C 0.01 0.06 11.28 -17.46 -0.20 -0.14 16 24 N -0.49 -4.64 11.22 -14.38 -0.16 -4.80 16 25 C 0.20 1.21 13.02 -90.32 -1.18 0.03 16 26 N -0.56 -3.15 6.06 -10.65 -0.06 -3.21 16 27 H 0.42 1.14 8.20 -40.82 -0.33 0.81 16 28 C -0.13 -0.96 9.65 -39.60 -0.38 -1.35 16 29 C -0.07 -0.64 9.48 -39.59 -0.38 -1.02 16 30 C 0.14 2.76 6.41 -2.52 -0.02 2.74 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 34 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.20 6.35 -40.82 -0.26 3.94 16 39 H 0.14 1.35 7.64 -52.48 -0.40 0.95 16 40 H 0.14 0.76 7.04 -52.48 -0.37 0.40 16 41 H 0.18 1.13 7.30 -52.49 -0.38 0.75 16 42 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.12 0.61 7.27 -52.49 -0.38 0.23 16 44 H 0.13 0.93 6.38 -52.48 -0.34 0.60 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -35.39 380.67 -11.43 -46.82 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.15 Total: 1.81 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -5.52 Total: -3.12 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.56 Total: -59.08 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.39 -11.43 -46.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028906507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.163 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds