Wall clock time and date at job start Sat Apr 11 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48500 * 109.46917 * 84.79068 * 3 2 1 5 5 H 1.48493 * 109.47245 * 324.79078 * 3 2 1 6 6 H 1.48497 * 109.47248 * 204.78916 * 3 2 1 7 7 C 1.38812 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99710 * 18.35711 * 7 2 1 9 9 N 1.36933 * 120.00346 * 198.35185 * 7 2 1 10 10 C 1.43430 * 120.54018 * 215.77974 * 9 7 2 11 11 C 1.54401 * 116.38872 * 271.73308 * 10 9 7 12 12 C 1.54847 * 110.07111 * 318.64643 * 11 10 9 13 13 C 1.50124 * 110.81560 * 321.07947 * 12 11 10 14 14 C 1.52527 * 105.41550 * 97.67853 * 13 12 11 15 15 H 1.08998 * 108.39994 * 31.74572 * 14 13 12 16 16 N 1.46507 * 108.51994 * 149.34943 * 14 13 12 17 17 C 1.34774 * 119.99920 * 209.71955 * 16 14 13 18 18 O 1.21511 * 120.00078 * 0.02562 * 17 16 14 19 19 C 1.48231 * 119.99964 * 180.02562 * 17 16 14 20 20 C 1.40577 * 119.74748 * 180.02562 * 19 17 16 21 21 N 1.31260 * 120.56894 * 179.97438 * 20 19 17 22 22 C 1.33782 * 119.81069 * 359.97438 * 21 20 19 23 23 C 1.40533 * 121.00695 * 180.02562 * 22 21 20 24 24 C 1.36084 * 119.75684 * 179.97438 * 23 22 21 25 25 C 1.39476 * 121.01523 * 0.02562 * 24 23 22 26 26 C 1.35998 * 120.98175 * 359.97438 * 25 24 23 27 27 C 1.40819 * 119.69636 * 359.97438 * 26 25 24 28 28 N 1.32165 * 119.74643 * 359.72070 * 19 17 16 29 29 C 1.46231 * 114.27884 * 270.59252 * 14 13 12 30 30 H 0.97002 * 119.99716 * 359.97438 * 1 2 3 31 31 H 1.09004 * 108.15908 * 33.30434 * 10 9 7 32 32 H 1.09002 * 108.16242 * 149.87241 * 10 9 7 33 33 H 1.09002 * 109.44478 * 198.43670 * 11 10 9 34 34 H 1.09002 * 109.35229 * 78.80492 * 11 10 9 35 35 H 1.08996 * 109.20989 * 200.72838 * 12 11 10 36 36 H 1.08999 * 109.16533 * 81.39623 * 12 11 10 37 37 H 1.09007 * 110.25094 * 338.70779 * 13 12 11 38 38 H 1.08997 * 110.36640 * 216.71574 * 13 12 11 39 39 H 0.96998 * 119.99595 * 29.71933 * 16 14 13 40 40 H 1.08002 * 119.71236 * 359.97259 * 20 19 17 41 41 H 1.08006 * 120.12535 * 359.96027 * 23 22 21 42 42 H 1.07997 * 119.49312 * 180.02562 * 24 23 22 43 43 H 1.07998 * 119.51003 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.15297 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.84668 * 298.90170 * 29 14 13 46 46 H 1.08997 * 109.84709 * 177.92052 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3876 2.1100 1.3943 5 1 1.5071 2.6184 -0.8072 6 1 3.5985 1.4110 -0.5870 7 6 2.0103 -1.2021 0.0005 8 1 1.5115 -2.1138 -0.2936 9 7 3.3274 -1.2322 0.3739 10 6 4.2474 -2.1242 -0.2703 11 6 4.3687 -3.5395 0.3349 12 6 4.3743 -3.4576 1.8812 13 6 5.1650 -2.2706 2.3496 14 6 4.1348 -1.1798 2.6238 15 1 3.2123 -1.6541 2.9586 16 7 4.6365 -0.3268 3.7041 17 6 3.7709 0.2909 4.5322 18 8 2.5745 0.1399 4.3831 19 6 4.2785 1.1544 5.6249 20 6 3.3710 1.7956 6.4859 21 7 3.8027 2.5634 7.4591 22 6 5.1174 2.7381 7.6351 23 6 5.6072 3.5540 8.6691 24 6 6.9497 3.7135 8.8253 25 6 7.8528 3.0786 7.9728 26 6 7.4179 2.2812 6.9606 27 6 6.0362 2.0904 6.7672 28 7 5.5810 1.3106 5.7860 29 6 3.8306 -0.3360 1.4688 30 1 -0.4850 0.8401 0.0004 31 1 3.9447 -2.2304 -1.3120 32 1 5.2351 -1.6634 -0.2545 33 1 5.2952 -4.0017 -0.0058 34 1 3.5237 -4.1457 0.0082 35 1 4.8179 -4.3668 2.2869 36 1 3.3484 -3.3688 2.2386 37 1 5.8580 -1.9482 1.5723 38 1 5.7093 -2.5135 3.2622 39 1 5.5916 -0.2066 3.8234 40 1 2.3094 1.6554 6.3454 41 1 4.9209 4.0530 9.3373 42 1 7.3215 4.3412 9.6216 43 1 8.9131 3.2225 8.1187 44 1 8.1290 1.7958 6.3087 45 1 4.7327 0.1798 1.1396 46 1 3.0633 0.3914 1.7338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034247340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:06 Heat of formation + Delta-G solvation = 70.487301 kcal Electronic energy + Delta-G solvation = -29516.388734 eV Core-core repulsion = 25600.251610 eV Total energy + Delta-G solvation = -3916.137124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.78125 -39.87969 -38.18856 -37.38740 -35.26359 -34.46712 -33.38066 -31.48594 -31.22150 -30.99700 -30.04103 -26.50942 -25.98017 -24.91504 -24.65246 -22.95606 -22.58843 -21.16659 -20.51823 -19.24029 -18.76784 -18.60145 -17.67646 -16.69209 -16.15875 -15.95401 -15.68934 -15.48942 -15.23353 -14.73714 -14.48031 -14.29962 -14.21898 -13.98729 -13.89626 -13.26583 -12.98270 -12.67913 -12.33255 -12.22657 -12.16755 -12.10362 -12.02558 -11.98972 -11.80987 -11.65560 -11.12795 -10.76831 -10.57838 -10.36483 -10.18717 -10.16739 -9.83094 -9.71390 -9.47274 -9.32572 -9.31012 -8.99469 -8.79249 -8.51995 -6.84633 -5.91951 -3.35548 -0.29337 0.10807 1.50359 2.19949 3.02863 3.09497 3.39112 3.50560 3.54606 3.63603 3.76798 3.78039 3.92625 4.38239 4.49690 4.58785 4.68216 4.74075 4.85522 4.97327 5.06229 5.14674 5.31963 5.45651 5.45955 5.48862 5.51231 5.65192 5.82298 5.83809 5.87836 5.90709 5.91209 6.10306 6.13405 6.25586 6.30844 6.49966 6.54806 6.60833 6.69749 6.73553 6.79346 6.82895 6.89221 6.95290 7.30389 7.69527 8.06640 8.32170 8.46000 8.98693 9.75619 10.16876 11.23545 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003255 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.634750 B = 8600.524001 C = 9588.747173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.039 3.961 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.082 0.918 9 N -0.592 5.592 10 C 0.156 3.844 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.118 4.118 14 C 0.129 3.871 15 H 0.097 0.903 16 N -0.707 5.707 17 C 0.562 3.438 18 O -0.508 6.508 19 C 0.069 3.931 20 C 0.129 3.871 21 N -0.426 5.426 22 C 0.090 3.910 23 C -0.087 4.087 24 C -0.092 4.092 25 C -0.104 4.104 26 C -0.075 4.075 27 C 0.076 3.924 28 N -0.396 5.396 29 C 0.111 3.889 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.190 0.810 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.036 0.964 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.404 3.654 16.468 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.027 3.973 11 C -0.184 4.184 12 C -0.147 4.147 13 C -0.156 4.156 14 C 0.025 3.975 15 H 0.115 0.885 16 N -0.359 5.359 17 C 0.344 3.656 18 O -0.381 6.381 19 C -0.087 4.087 20 C -0.046 4.046 21 N -0.139 5.139 22 C -0.035 4.035 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.094 4.094 27 C -0.051 4.051 28 N -0.114 5.114 29 C -0.014 4.014 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.207 0.793 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.054 0.946 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.458 3.698 16.376 24.220 hybrid contribution 0.806 1.042 0.165 1.328 sum 18.264 4.740 16.540 25.092 Atomic orbital electron populations 1.69826 1.05879 1.26651 1.51755 1.25379 0.95066 0.97692 0.98025 0.86879 0.80393 0.84800 0.76944 1.21487 1.23010 1.19397 1.18758 0.84363 0.94137 1.42383 0.90070 1.44082 1.07451 1.43127 1.36737 1.20286 0.92305 0.89217 0.95461 1.22794 1.00176 1.00428 0.95049 1.21319 1.00578 0.96107 0.96689 1.21311 0.97613 0.95807 1.00904 1.21141 0.98259 0.91250 0.86876 0.88544 1.46387 1.10059 1.48275 1.31194 1.17691 0.86508 0.80253 0.81193 1.90917 1.14429 1.61402 1.71357 1.22705 0.90146 0.98258 0.97613 1.24084 1.02603 0.89508 0.88360 1.68852 1.13962 1.13455 1.17658 1.19831 0.89926 0.97339 0.96414 1.20837 0.95986 0.97373 0.96448 1.21090 0.92746 0.98431 0.98987 1.21035 1.00674 0.96185 0.94489 1.20897 0.92527 0.97952 0.98047 1.19620 0.95555 0.96467 0.93454 1.68517 1.14548 1.12003 1.16355 1.21121 0.98338 0.93891 0.88030 0.92712 0.93336 0.95379 0.92975 0.92470 0.93447 0.91207 0.90867 0.91774 0.76190 0.79290 0.84045 0.84528 0.84488 0.83939 0.94625 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.97 55.49 0.78 -27.50 16 2 C 0.04 1.16 5.29 -17.43 -0.09 1.06 16 3 Si 0.88 23.25 24.70 -169.99 -4.20 19.05 16 4 H -0.29 -7.65 6.70 56.52 0.38 -7.27 16 5 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 6 H -0.27 -6.85 7.06 56.52 0.40 -6.45 16 7 C -0.27 -7.56 9.98 -15.06 -0.15 -7.71 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 N -0.59 -13.94 2.21 -175.41 -0.39 -14.32 16 10 C 0.16 3.02 5.13 -4.93 -0.03 2.99 16 11 C -0.14 -2.35 6.40 -25.02 -0.16 -2.51 16 12 C -0.11 -1.72 5.65 -27.19 -0.15 -1.87 16 13 C -0.12 -1.76 5.25 -28.40 -0.15 -1.90 16 14 C 0.13 2.37 2.01 -71.39 -0.14 2.23 16 15 H 0.10 2.09 6.22 -51.93 -0.32 1.77 16 16 N -0.71 -11.47 4.86 -58.04 -0.28 -11.75 16 17 C 0.56 9.99 7.73 -12.15 -0.09 9.90 16 18 O -0.51 -11.01 15.85 5.36 0.08 -10.93 16 19 C 0.07 1.05 6.76 -82.73 -0.56 0.49 16 20 C 0.13 1.86 10.75 -16.91 -0.18 1.67 16 21 N -0.43 -5.83 10.45 -10.53 -0.11 -5.94 16 22 C 0.09 1.10 6.60 -84.70 -0.56 0.54 16 23 C -0.09 -0.77 9.98 -39.49 -0.39 -1.16 16 24 C -0.09 -0.58 9.95 -39.89 -0.40 -0.98 16 25 C -0.10 -0.65 9.95 -39.92 -0.40 -1.05 16 26 C -0.07 -0.65 9.99 -39.41 -0.39 -1.04 16 27 C 0.08 0.92 6.60 -84.79 -0.56 0.36 16 28 N -0.40 -5.39 9.64 -7.39 -0.07 -5.47 16 29 C 0.11 2.44 3.44 -5.21 -0.02 2.42 16 30 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16 32 H 0.03 0.49 6.89 -51.93 -0.36 0.14 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.29 6.82 -51.93 -0.35 0.94 16 37 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 38 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.40 5.42 7.95 -40.82 -0.32 5.09 16 40 H 0.19 2.54 7.62 -52.49 -0.40 2.14 16 41 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.04 0.73 8.11 -51.92 -0.42 0.31 16 46 H 0.08 2.01 4.14 -51.93 -0.22 1.79 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -34.36 367.09 -9.18 -43.54 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.10 Total: 4.34 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -4.43 Total: 3.45 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.08 Total: -64.98 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.20 Total: 19.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.36 -9.18 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034247340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.026 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds