Wall clock time and date at job start Sat Apr 11 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00369 * 2 1 4 4 H 1.48496 * 109.47531 * 270.00109 * 3 2 1 5 5 H 1.48500 * 109.47093 * 30.00319 * 3 2 1 6 6 H 1.48504 * 109.47411 * 149.99954 * 3 2 1 7 7 C 1.38812 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00104 * 195.67349 * 7 2 1 9 9 N 1.36942 * 120.00166 * 15.67710 * 7 2 1 10 10 C 1.47599 * 118.64542 * 26.50394 * 9 7 2 11 11 C 1.53943 * 112.14156 * 137.87211 * 10 9 7 12 12 C 1.50879 * 110.09253 * 319.43292 * 11 10 9 13 13 C 1.52573 * 109.35297 * 91.89302 * 12 11 10 14 14 C 1.47095 * 114.32557 * 274.97934 * 13 12 11 15 15 H 1.08997 * 109.33182 * 302.71408 * 14 13 12 16 16 N 1.46507 * 109.32568 * 183.05957 * 14 13 12 17 17 C 1.34780 * 119.99550 * 154.65439 * 16 14 13 18 18 O 1.21499 * 119.99729 * 0.02562 * 17 16 14 19 19 C 1.48226 * 119.99547 * 180.02562 * 17 16 14 20 20 C 1.40577 * 119.74562 * 180.02562 * 19 17 16 21 21 N 1.31267 * 120.57324 * 179.97438 * 20 19 17 22 22 C 1.33787 * 119.80457 * 0.02562 * 21 20 19 23 23 C 1.40535 * 121.00204 * 179.73084 * 22 21 20 24 24 C 1.36078 * 119.75447 * 179.72666 * 23 22 21 25 25 C 1.39482 * 121.01280 * 0.56130 * 24 23 22 26 26 C 1.35983 * 120.98419 * 359.71343 * 25 24 23 27 27 C 1.40826 * 119.69763 * 359.97438 * 26 25 24 28 28 N 1.32165 * 119.75198 * 359.97438 * 19 17 16 29 29 C 1.44664 * 118.81216 * 206.51751 * 9 7 2 30 30 H 0.97003 * 119.99536 * 0.02562 * 1 2 3 31 31 H 1.09009 * 108.94783 * 17.18357 * 10 9 7 32 32 H 1.09003 * 108.94815 * 258.55876 * 10 9 7 33 33 H 1.08999 * 109.36728 * 199.24611 * 11 10 9 34 34 H 1.08993 * 109.26423 * 79.56356 * 11 10 9 35 35 H 1.08995 * 109.49522 * 331.93163 * 12 11 10 36 36 H 1.09002 * 109.49234 * 211.85191 * 12 11 10 37 37 H 1.09008 * 108.51217 * 153.72717 * 13 12 11 38 38 H 1.08996 * 108.38901 * 36.14866 * 13 12 11 39 39 H 0.97000 * 120.00329 * 334.65299 * 16 14 13 40 40 H 1.07997 * 119.71429 * 359.97006 * 20 19 17 41 41 H 1.08003 * 120.12639 * 0.02562 * 23 22 21 42 42 H 1.07998 * 119.50007 * 180.27627 * 24 23 22 43 43 H 1.08002 * 119.50764 * 179.69084 * 25 24 23 44 44 H 1.08003 * 120.15885 * 180.02562 * 26 25 24 45 45 H 1.08994 * 109.61372 * 150.82723 * 29 9 7 46 46 H 1.09009 * 109.32355 * 30.88099 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0600 -1.2198 0.2521 9 7 1.3636 -2.3659 -0.3215 10 6 0.1796 -2.2984 -1.2002 11 6 0.1717 -3.4237 -2.2507 12 6 1.5630 -3.6344 -2.7950 13 6 2.2710 -4.7064 -1.9719 14 6 2.9228 -4.2027 -0.7532 15 1 3.6392 -3.4264 -1.0218 16 7 3.6262 -5.3031 -0.0893 17 6 4.6791 -5.0441 0.7112 18 8 5.0445 -3.8981 0.8826 19 6 5.3911 -6.1575 1.3825 20 6 6.4883 -5.8814 2.2168 21 7 7.1303 -6.8548 2.8196 22 6 6.7389 -8.1213 2.6393 23 6 7.4114 -9.1832 3.2678 24 6 6.9882 -10.4615 3.0711 25 6 5.9004 -10.7389 2.2433 26 6 5.2273 -9.7394 1.6132 27 6 5.6309 -8.4028 1.7968 28 7 4.9890 -7.4021 1.1929 29 6 1.8659 -3.6128 0.2129 30 1 -0.4849 0.8401 -0.0004 31 1 0.1733 -1.3361 -1.7123 32 1 -0.7196 -2.3782 -0.5893 33 1 -0.4982 -3.1520 -3.0665 34 1 -0.1786 -4.3458 -1.7872 35 1 2.1225 -2.7010 -2.7345 36 1 1.5020 -3.9556 -3.8348 37 1 3.0270 -5.1805 -2.5980 38 1 1.5377 -5.4604 -1.6859 39 1 3.3341 -6.2179 -0.2259 40 1 6.8058 -4.8595 2.3630 41 1 8.2581 -8.9852 3.9085 42 1 7.5053 -11.2740 3.5597 43 1 5.5882 -11.7629 2.1004 44 1 4.3865 -9.9694 0.9755 45 1 1.0440 -4.3195 0.3271 46 1 2.3246 -3.4300 1.1847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034247341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:10 Heat of formation + Delta-G solvation = 59.733522 kcal Electronic energy + Delta-G solvation = -29083.824720 eV Core-core repulsion = 25167.221278 eV Total energy + Delta-G solvation = -3916.603442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78244 -39.68589 -37.99485 -37.32181 -35.26871 -34.54489 -33.21038 -31.47065 -31.00810 -30.82458 -29.87961 -26.33736 -25.81382 -24.89368 -24.10662 -23.05825 -22.59867 -21.06394 -20.18780 -19.18427 -18.83272 -18.61806 -17.62648 -16.57474 -16.07691 -15.96459 -15.67020 -15.31476 -14.95430 -14.76713 -14.53835 -14.23900 -14.13378 -13.84745 -13.54568 -13.14715 -12.67938 -12.52143 -12.32743 -12.24354 -12.17642 -12.10619 -12.01437 -11.99833 -11.53550 -11.03012 -10.92540 -10.76053 -10.55398 -10.18447 -10.12911 -10.08514 -9.70787 -9.61615 -9.56136 -9.34536 -9.32510 -9.00184 -8.82966 -8.29724 -6.61551 -5.71770 -3.15316 -0.29647 0.10082 1.49878 2.19552 3.04959 3.09899 3.44617 3.51177 3.54960 3.64173 3.76494 3.77044 3.92425 4.38128 4.49615 4.58225 4.71652 4.74192 4.84914 5.07452 5.25939 5.37359 5.44918 5.47067 5.48100 5.55258 5.64886 5.75765 5.81572 5.90642 5.99374 6.04041 6.16615 6.25140 6.31175 6.40311 6.61000 6.63151 6.67116 6.73739 6.83122 6.84324 6.94364 7.10187 7.30172 7.47810 7.73538 7.75540 7.95074 8.34578 8.54420 9.31015 9.95844 10.39986 11.35873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.002680 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.385912 B =10443.543305 C =11583.979439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.071 0.929 9 N -0.583 5.583 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.112 3.888 15 H 0.091 0.909 16 N -0.697 5.697 17 C 0.565 3.435 18 O -0.512 6.512 19 C 0.070 3.930 20 C 0.129 3.871 21 N -0.427 5.427 22 C 0.090 3.910 23 C -0.088 4.088 24 C -0.092 4.092 25 C -0.104 4.104 26 C -0.075 4.075 27 C 0.076 3.924 28 N -0.396 5.396 29 C 0.157 3.843 30 H 0.252 0.748 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.402 0.598 40 H 0.190 0.810 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.033 0.967 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 -22.935 1.351 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.006 3.994 15 H 0.109 0.891 16 N -0.348 5.348 17 C 0.347 3.653 18 O -0.386 6.386 19 C -0.087 4.087 20 C -0.046 4.046 21 N -0.140 5.140 22 C -0.035 4.035 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.094 4.094 27 C -0.051 4.051 28 N -0.114 5.114 29 C 0.027 3.973 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.237 0.763 40 H 0.207 0.793 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.051 0.949 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.453 -22.097 1.511 24.491 hybrid contribution 0.239 0.364 -0.070 0.442 sum 10.692 -21.732 1.441 24.263 Atomic orbital electron populations 1.70084 1.05200 1.25331 1.54470 1.25021 0.95262 0.98356 1.00780 0.86302 0.79317 0.83669 0.77653 1.21508 1.21898 1.20250 1.19332 0.92736 0.84698 1.41709 0.91158 1.43614 1.32123 1.01480 1.53145 1.21065 0.88441 0.95835 0.89601 1.22083 0.95889 1.00659 0.99647 1.20826 0.97059 0.99379 0.96554 1.20581 0.99324 0.99022 0.96137 1.21403 0.96164 0.87853 0.93999 0.89054 1.46048 1.30450 1.11462 1.46794 1.17578 0.80917 0.86770 0.80043 1.90879 1.66034 1.20071 1.61651 1.22716 0.96163 0.92145 0.97638 1.24068 0.90191 1.00507 0.89834 1.68853 1.27000 0.98960 1.19201 1.19818 0.94613 0.92583 0.96510 1.20832 0.99866 0.90770 0.99214 1.21091 0.96210 0.96727 0.97221 1.21036 0.95301 0.99876 0.96177 1.20902 0.99968 0.89334 0.99207 1.19619 0.94499 0.94305 0.96662 1.68529 1.26059 0.99029 1.17803 1.20928 0.93387 0.88534 0.94406 0.93790 0.90606 0.95729 0.92886 0.93671 0.90411 0.93344 0.93318 0.92698 0.76335 0.79346 0.84077 0.84549 0.84497 0.83933 0.94883 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.39 11.01 55.49 0.61 -25.77 16 2 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 3 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -7.08 9.45 -15.06 -0.14 -7.22 16 8 H 0.07 2.01 7.88 -52.49 -0.41 1.60 16 9 N -0.58 -14.41 2.27 -172.03 -0.39 -14.80 16 10 C 0.18 4.12 4.66 -2.95 -0.01 4.11 16 11 C -0.14 -2.62 5.70 -27.30 -0.16 -2.77 16 12 C -0.10 -1.69 5.51 -28.01 -0.15 -1.84 16 13 C -0.11 -1.75 4.55 -29.78 -0.14 -1.88 16 14 C 0.11 2.01 2.34 -69.78 -0.16 1.84 16 15 H 0.09 1.93 7.57 -51.93 -0.39 1.53 16 16 N -0.70 -10.71 5.05 -56.45 -0.28 -11.00 16 17 C 0.57 9.30 7.77 -12.15 -0.09 9.21 16 18 O -0.51 -10.23 15.98 5.37 0.09 -10.14 16 19 C 0.07 0.99 6.76 -82.74 -0.56 0.43 16 20 C 0.13 1.71 10.75 -16.91 -0.18 1.53 16 21 N -0.43 -5.49 10.45 -10.53 -0.11 -5.60 16 22 C 0.09 1.04 6.60 -84.70 -0.56 0.48 16 23 C -0.09 -0.73 9.98 -39.49 -0.39 -1.12 16 24 C -0.09 -0.55 9.95 -39.89 -0.40 -0.94 16 25 C -0.10 -0.62 9.95 -39.93 -0.40 -1.01 16 26 C -0.07 -0.62 9.99 -39.41 -0.39 -1.01 16 27 C 0.08 0.87 6.60 -84.79 -0.56 0.31 16 28 N -0.40 -5.10 9.64 -7.39 -0.07 -5.17 16 29 C 0.16 3.35 5.24 -4.04 -0.02 3.33 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.08 1.99 6.33 -51.92 -0.33 1.66 16 32 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 35 H 0.08 1.54 7.48 -51.93 -0.39 1.15 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 39 H 0.40 5.23 7.91 -40.82 -0.32 4.91 16 40 H 0.19 2.29 7.62 -52.49 -0.40 1.89 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 44 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 46 H 0.05 1.15 7.98 -51.92 -0.41 0.74 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -32.27 374.42 -10.30 -42.58 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.35 Total: 3.51 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -4.41 Total: 3.46 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.25 Total: -62.34 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.27 -10.30 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034247341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.310 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds