Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00160 * 2 1 4 4 H 1.48501 * 109.47094 * 264.98532 * 3 2 1 5 5 H 1.48500 * 109.47349 * 24.98333 * 3 2 1 6 6 H 1.48497 * 109.47273 * 144.98394 * 3 2 1 7 7 C 1.38809 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00097 * 196.97426 * 7 2 1 9 9 N 1.36938 * 119.99916 * 16.96898 * 7 2 1 10 10 C 1.47605 * 118.64241 * 27.29915 * 9 7 2 11 11 C 1.53955 * 112.14184 * 137.86263 * 10 9 7 12 12 C 1.50875 * 110.09588 * 319.43758 * 11 10 9 13 13 C 1.52571 * 109.35711 * 91.88619 * 12 11 10 14 14 C 1.47095 * 114.32776 * 274.98440 * 13 12 11 15 15 H 1.09000 * 109.32541 * 302.70678 * 14 13 12 16 16 N 1.46499 * 109.32493 * 183.06030 * 14 13 12 17 17 C 1.34777 * 119.99515 * 154.65339 * 16 14 13 18 18 O 1.21544 * 120.00394 * 359.97438 * 17 16 14 19 19 C 1.47921 * 119.99808 * 179.97438 * 17 16 14 20 20 N 1.32369 * 120.63347 * 354.43884 * 19 17 16 21 21 N 1.28094 * 123.17957 * 180.02562 * 20 19 17 22 22 C 1.31794 * 123.49818 * 359.97438 * 21 20 19 23 23 C 1.40411 * 119.13688 * 0.02562 * 22 21 20 24 24 C 1.40227 * 122.73312 * 180.02562 * 23 22 21 25 25 C 1.36260 * 119.36668 * 179.97438 * 24 23 22 26 26 C 1.39370 * 121.07115 * 0.02562 * 25 24 23 27 27 C 1.36360 * 121.09361 * 359.97438 * 26 25 24 28 28 C 1.39841 * 119.42046 * 0.02562 * 27 26 25 29 29 C 1.44664 * 118.81532 * 207.30333 * 9 7 2 30 30 H 0.97005 * 119.99536 * 0.02562 * 1 2 3 31 31 H 1.08997 * 108.95055 * 17.17985 * 10 9 7 32 32 H 1.09001 * 108.94959 * 258.55038 * 10 9 7 33 33 H 1.08994 * 109.36949 * 199.24140 * 11 10 9 34 34 H 1.09006 * 109.26196 * 79.56071 * 11 10 9 35 35 H 1.09002 * 109.49297 * 331.92481 * 12 11 10 36 36 H 1.08997 * 109.49137 * 211.85558 * 12 11 10 37 37 H 1.09003 * 108.50983 * 153.73259 * 13 12 11 38 38 H 1.08993 * 108.39095 * 36.15218 * 13 12 11 39 39 H 0.96993 * 120.00655 * 334.65225 * 16 14 13 40 40 H 1.07994 * 120.43229 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.31613 * 0.02562 * 24 23 22 42 42 H 1.08005 * 119.46041 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.45262 * 180.27989 * 26 25 24 44 44 H 1.08001 * 120.29435 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.61681 * 150.83439 * 29 9 7 46 46 H 1.08994 * 109.32291 * 30.89291 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9851 -1.3947 5 1 1.3987 2.6809 0.5913 6 1 3.4907 1.4730 0.8033 7 6 2.0102 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2736 9 7 1.3702 -2.3624 -0.3451 10 6 0.2145 -2.2873 -1.2602 11 6 0.2359 -3.4085 -2.3150 12 6 1.6428 -3.6219 -2.8163 13 6 2.3212 -4.6995 -1.9758 14 6 2.9361 -4.2027 -0.7353 15 1 3.6632 -3.4279 -0.9783 16 7 3.6148 -5.3080 -0.0542 17 6 4.6429 -5.0558 0.7799 18 8 5.0073 -3.9114 0.9667 19 6 5.3279 -6.1718 1.4680 20 7 4.8741 -7.4106 1.3606 21 7 5.4281 -8.4124 1.9352 22 6 6.5039 -8.3145 2.6902 23 6 7.0882 -7.0530 2.8874 24 6 8.2328 -6.8623 3.6747 25 6 8.7429 -5.6070 3.8192 26 6 8.1452 -4.5119 3.1980 27 6 7.0315 -4.6616 2.4256 28 6 6.4801 -5.9353 2.2548 29 6 1.8515 -3.6131 0.1997 30 1 -0.4850 0.8401 -0.0004 31 1 0.2274 -1.3231 -1.7683 32 1 -0.7036 -2.3665 -0.6780 33 1 -0.4073 -3.1314 -3.1502 34 1 -0.1318 -4.3314 -1.8664 35 1 2.2032 -2.6906 -2.7346 36 1 1.6133 -3.9387 -3.8588 37 1 3.0948 -5.1735 -2.5798 38 1 1.5769 -5.4521 -1.7159 39 1 3.3242 -6.2213 -0.2036 40 1 6.9306 -9.1930 3.1511 41 1 8.7060 -7.7024 4.1613 42 1 9.6246 -5.4584 4.4249 43 1 8.5741 -3.5291 3.3266 44 1 6.5791 -3.8040 1.9499 45 1 1.0241 -4.3175 0.2853 46 1 2.2801 -3.4357 1.1861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034307565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = 68.895751 kcal Electronic energy + Delta-G solvation = -29536.554983 eV Core-core repulsion = 25620.348845 eV Total energy + Delta-G solvation = -3916.206138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69340 -39.57457 -38.27378 -37.69045 -34.66252 -33.61838 -33.23319 -32.04499 -31.08203 -30.73794 -29.81521 -26.32096 -25.68633 -24.51402 -24.23781 -23.38386 -22.68955 -20.93449 -20.15187 -19.19161 -18.66076 -18.34741 -17.49515 -16.57473 -16.38996 -15.94773 -15.59298 -15.03366 -14.96970 -14.82777 -14.44773 -14.17779 -14.10430 -13.67020 -13.52654 -13.14280 -12.84653 -12.63851 -12.58459 -12.51411 -12.10110 -11.84498 -11.63923 -11.52436 -11.05643 -10.90539 -10.80548 -10.73024 -10.56576 -10.12878 -10.11901 -9.96522 -9.72330 -9.65789 -9.62719 -9.56989 -9.55677 -8.91416 -8.71028 -8.30855 -6.61372 -5.73208 -3.16758 -0.27921 0.32752 1.34843 2.45580 3.03106 3.07789 3.42981 3.49310 3.52037 3.72145 3.76774 4.07691 4.21683 4.34194 4.44112 4.57208 4.74829 4.83162 4.93206 5.20583 5.26546 5.35987 5.37367 5.45911 5.47525 5.54770 5.65842 5.75593 5.89715 5.98064 6.03884 6.08962 6.13224 6.18426 6.32036 6.41112 6.45215 6.61078 6.63945 6.71957 6.74584 6.84307 6.94473 7.10319 7.46045 7.67100 7.73007 7.93615 8.30550 8.48730 8.53515 9.29620 9.94711 10.39739 11.34471 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.003289 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.546690 B = 8510.814217 C =10165.360067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.582 5.582 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.099 4.099 13 C -0.114 4.114 14 C 0.112 3.888 15 H 0.092 0.908 16 N -0.694 5.694 17 C 0.571 3.429 18 O -0.515 6.515 19 C 0.078 3.922 20 N -0.234 5.234 21 N -0.266 5.266 22 C 0.096 3.904 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.094 4.094 26 C -0.104 4.104 27 C -0.086 4.086 28 C -0.048 4.048 29 C 0.157 3.843 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.404 0.596 40 H 0.179 0.821 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.178 0.822 45 H 0.034 0.966 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.896 -15.540 3.670 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.303 5.303 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.152 4.152 14 C 0.006 3.994 15 H 0.110 0.890 16 N -0.343 5.343 17 C 0.353 3.647 18 O -0.390 6.390 19 C -0.080 4.080 20 N -0.071 5.071 21 N -0.097 5.097 22 C -0.078 4.078 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.105 4.105 28 C -0.056 4.056 29 C 0.027 3.973 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.196 0.804 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.195 0.805 45 H 0.052 0.948 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.720 -15.611 3.082 21.011 hybrid contribution 1.452 1.174 0.674 1.985 sum 15.172 -14.437 3.756 21.278 Atomic orbital electron populations 1.70091 1.05223 1.25399 1.54067 1.25021 0.95200 0.98345 1.00672 0.86347 0.79227 0.83695 0.77798 1.21435 1.21879 1.20388 1.19293 0.93089 0.84902 1.41440 0.91264 1.43595 1.34629 1.01427 1.50603 1.21040 0.89039 0.95742 0.89084 1.22080 0.95837 1.00673 0.99697 1.20821 0.97100 0.99292 0.96564 1.20590 0.99598 0.99083 0.95936 1.21419 0.96743 0.87654 0.93593 0.89020 1.46081 1.32134 1.11696 1.44424 1.17411 0.80668 0.86631 0.80024 1.90685 1.64729 1.20775 1.62856 1.23183 0.93957 0.94545 0.96266 1.72720 1.23739 0.96027 1.14602 1.72616 1.08189 1.22562 1.06374 1.24777 0.92354 0.96860 0.93784 1.18912 0.97490 0.93847 0.99075 1.20919 0.94683 0.98326 0.98146 1.21179 0.99544 0.92564 0.98049 1.21306 0.95473 0.99591 0.95945 1.22139 0.94550 0.97693 0.96114 1.18643 0.94959 0.95167 0.96847 1.20930 0.93314 0.88505 0.94526 0.93759 0.90941 0.95644 0.92860 0.93560 0.90445 0.93304 0.93249 0.92542 0.76063 0.80364 0.84285 0.84975 0.84706 0.80530 0.94770 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.16 55.49 0.62 -25.61 16 2 C 0.01 0.17 4.83 -17.43 -0.08 0.09 16 3 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -7.10 9.43 -15.06 -0.14 -7.25 16 8 H 0.07 1.96 7.89 -52.49 -0.41 1.54 16 9 N -0.58 -14.35 2.27 -172.02 -0.39 -14.74 16 10 C 0.18 4.13 4.67 -2.94 -0.01 4.11 16 11 C -0.14 -2.63 5.71 -27.30 -0.16 -2.78 16 12 C -0.10 -1.69 5.51 -28.02 -0.15 -1.84 16 13 C -0.11 -1.79 4.55 -29.78 -0.14 -1.93 16 14 C 0.11 2.02 2.34 -69.78 -0.16 1.85 16 15 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 16 N -0.69 -10.97 5.05 -56.55 -0.29 -11.25 16 17 C 0.57 9.60 7.74 -12.29 -0.10 9.50 16 18 O -0.52 -9.98 13.25 5.33 0.07 -9.91 16 19 C 0.08 1.17 6.90 -82.42 -0.57 0.60 16 20 N -0.23 -3.43 10.70 33.56 0.36 -3.08 16 21 N -0.27 -3.50 11.41 30.90 0.35 -3.15 16 22 C 0.10 0.95 11.20 -16.75 -0.19 0.76 16 23 C -0.09 -0.91 5.75 -106.85 -0.61 -1.52 16 24 C -0.10 -0.76 9.84 -39.55 -0.39 -1.14 16 25 C -0.09 -0.69 9.95 -39.87 -0.40 -1.09 16 26 C -0.10 -0.98 9.95 -39.84 -0.40 -1.37 16 27 C -0.09 -1.09 9.27 -39.66 -0.37 -1.46 16 28 C -0.05 -0.65 5.77 -106.57 -0.61 -1.26 16 29 C 0.16 3.36 5.24 -4.04 -0.02 3.34 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.07 1.89 6.43 -51.93 -0.33 1.56 16 32 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 35 H 0.08 1.52 7.48 -51.93 -0.39 1.14 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.83 7.34 -51.93 -0.38 0.45 16 39 H 0.40 5.59 7.97 -40.82 -0.33 5.26 16 40 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.18 2.61 5.12 -52.49 -0.27 2.34 16 45 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 46 H 0.05 1.16 7.97 -51.93 -0.41 0.74 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -32.17 369.49 -9.46 -41.63 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.23 Total: 4.87 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -4.50 Total: -1.39 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.66 Total: -57.83 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.17 -9.46 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034307565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.526 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds