Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00420 * 2 1 4 4 H 1.48494 * 109.47154 * 89.99360 * 3 2 1 5 5 H 1.48498 * 109.46912 * 329.99945 * 3 2 1 6 6 H 1.48499 * 109.47511 * 209.99998 * 3 2 1 7 7 C 1.38816 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 139.40738 * 7 2 1 9 9 N 1.36941 * 119.99628 * 319.40645 * 7 2 1 10 10 C 1.50162 * 120.53957 * 353.16614 * 9 7 2 11 11 C 1.46238 * 107.53221 * 109.56614 * 10 9 7 12 12 C 1.52526 * 114.27855 * 58.40909 * 11 10 9 13 13 C 1.50130 * 105.41400 * 270.59348 * 12 11 10 14 14 C 1.54838 * 110.81478 * 97.68155 * 13 12 11 15 15 H 1.09007 * 109.35951 * 81.33880 * 14 13 12 16 16 N 1.46496 * 109.35934 * 200.92614 * 14 13 12 17 17 C 1.34777 * 120.00144 * 205.00269 * 16 14 13 18 18 O 1.21541 * 120.00072 * 359.97438 * 17 16 14 19 19 C 1.47917 * 119.99994 * 180.02562 * 17 16 14 20 20 N 1.32372 * 120.63442 * 354.75751 * 19 17 16 21 21 N 1.28093 * 123.17858 * 179.73953 * 20 19 17 22 22 C 1.31795 * 123.49423 * 0.56183 * 21 20 19 23 23 C 1.40398 * 119.14298 * 359.72571 * 22 21 20 24 24 C 1.40235 * 122.74943 * 179.97438 * 23 22 21 25 25 C 1.36250 * 119.37161 * 180.02562 * 24 23 22 26 26 C 1.39375 * 121.07907 * 0.02562 * 25 24 23 27 27 C 1.36364 * 121.08400 * 359.92844 * 26 25 24 28 28 C 1.39829 * 119.42031 * 0.09330 * 27 26 25 29 29 C 1.43433 * 120.53161 * 172.88889 * 9 7 2 30 30 H 0.97004 * 120.00293 * 173.77150 * 1 2 3 31 31 H 1.09005 * 109.84720 * 229.07332 * 10 9 7 32 32 H 1.09004 * 109.84985 * 349.99104 * 10 9 7 33 33 H 1.09005 * 108.52397 * 179.65171 * 11 10 9 34 34 H 1.09000 * 108.52215 * 297.32260 * 11 10 9 35 35 H 1.09004 * 110.24845 * 29.56423 * 12 11 10 36 36 H 1.08993 * 110.25095 * 151.47902 * 12 11 10 37 37 H 1.08995 * 109.20734 * 218.02412 * 13 12 11 38 38 H 1.09002 * 109.20553 * 337.33946 * 13 12 11 39 39 H 0.97002 * 119.99700 * 25.00144 * 16 14 13 40 40 H 1.08002 * 120.42950 * 179.70994 * 22 21 20 41 41 H 1.08004 * 120.31399 * 0.02986 * 24 23 22 42 42 H 1.08004 * 119.46409 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.45893 * 179.97438 * 26 25 24 44 44 H 1.08007 * 120.28904 * 180.02562 * 27 26 25 45 45 H 1.08991 * 108.16257 * 33.30468 * 29 9 7 46 46 H 1.09003 * 108.15959 * 149.87674 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 1.4478 2.6526 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 2.8953 -1.3151 -0.6080 9 7 1.5726 -2.2450 0.7727 10 6 0.4372 -2.0564 1.7372 11 6 -0.7151 -2.7858 1.2093 12 6 -0.4715 -4.2770 1.0006 13 6 0.0582 -4.4028 -0.3985 14 6 1.6041 -4.4909 -0.3957 15 1 1.9073 -5.5137 -0.1714 16 7 2.1144 -4.1147 -1.7164 17 6 3.3124 -4.5719 -2.1313 18 8 3.9697 -5.2959 -1.4095 19 6 3.8279 -4.1915 -3.4645 20 7 3.0807 -3.4887 -4.3012 21 7 3.4793 -3.1291 -5.4642 22 6 4.6667 -3.4294 -5.9511 23 6 5.5582 -4.1779 -5.1663 24 6 6.8387 -4.5399 -5.6089 25 6 7.6478 -5.2684 -4.7898 26 6 7.2231 -5.6592 -3.5211 27 6 5.9849 -5.3237 -3.0588 28 6 5.1271 -4.5769 -3.8723 29 6 2.1874 -3.5367 0.6690 30 1 -0.4851 -0.8351 -0.0911 31 1 0.7115 -2.4547 2.7141 32 1 0.1975 -0.9966 1.8240 33 1 -1.5484 -2.6646 1.9015 34 1 -0.9947 -2.3456 0.2522 35 1 0.2642 -4.6429 1.7169 36 1 -1.4051 -4.8298 1.1039 37 1 -0.3514 -5.3025 -0.8575 38 1 -0.2503 -3.5328 -0.9783 39 1 1.5899 -3.5365 -2.2922 40 1 4.9501 -3.1040 -6.9412 41 1 7.1802 -4.2439 -6.5898 42 1 8.6341 -5.5483 -5.1293 43 1 7.8859 -6.2366 -2.8936 44 1 5.6691 -5.6330 -2.0733 45 1 3.2446 -3.3929 0.4464 46 1 2.1139 -4.0270 1.6397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034307566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = 80.265828 kcal Electronic energy + Delta-G solvation = -30123.245888 eV Core-core repulsion = 26207.532793 eV Total energy + Delta-G solvation = -3915.713095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55331 -39.47486 -38.15766 -37.96924 -34.59624 -33.50674 -33.30720 -31.92616 -31.27533 -30.65293 -29.78086 -26.41216 -25.59118 -24.39918 -24.20801 -23.19171 -22.54719 -21.01874 -20.19120 -19.30504 -18.56231 -18.23389 -17.37731 -17.10748 -16.23953 -15.71550 -15.54727 -15.16397 -14.82439 -14.81749 -14.40052 -14.22593 -14.01391 -13.63199 -13.54711 -13.38887 -12.73783 -12.70388 -12.50887 -12.41509 -12.16296 -11.86317 -11.75187 -11.46173 -11.05400 -10.85917 -10.69003 -10.55861 -10.40736 -10.18970 -10.04358 -9.81975 -9.77920 -9.74158 -9.55479 -9.50641 -9.43183 -8.84612 -8.60253 -8.14536 -6.96785 -6.15997 -3.00208 -0.15000 0.45408 1.44853 2.58224 3.11858 3.26121 3.55539 3.58148 3.74345 3.87431 3.91657 4.21804 4.34045 4.47596 4.53404 4.62336 4.82946 4.95996 5.03712 5.14473 5.18703 5.30174 5.32611 5.40880 5.45721 5.57382 5.69734 5.74514 5.91490 5.95055 5.98191 6.00797 6.17048 6.17309 6.24207 6.33290 6.36477 6.53172 6.59821 6.67618 6.68563 6.83726 6.88392 7.01117 7.23925 7.25784 7.81828 8.02010 8.41676 8.54325 8.67191 9.08294 9.85647 10.28761 11.14294 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003810 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.660929 B = 7346.498667 C = 8399.639975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.013 4.013 3 Si 1.038 2.962 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.351 4.351 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.128 3.872 11 C -0.136 4.136 12 C -0.109 4.109 13 C -0.113 4.113 14 C 0.110 3.890 15 H 0.079 0.921 16 N -0.671 5.671 17 C 0.572 3.428 18 O -0.543 6.543 19 C 0.076 3.924 20 N -0.226 5.226 21 N -0.261 5.261 22 C 0.093 3.907 23 C -0.086 4.086 24 C -0.099 4.099 25 C -0.097 4.097 26 C -0.107 4.107 27 C -0.086 4.086 28 C -0.047 4.047 29 C 0.153 3.847 30 H 0.274 0.726 31 H 0.024 0.976 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.179 0.821 41 H 0.139 0.861 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.176 0.824 45 H 0.042 0.958 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -12.390 -8.173 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.216 4.216 3 Si 0.868 3.132 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.479 4.479 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.004 3.996 11 C -0.176 4.176 12 C -0.147 4.147 13 C -0.151 4.151 14 C 0.002 3.998 15 H 0.097 0.903 16 N -0.319 5.319 17 C 0.355 3.645 18 O -0.422 6.422 19 C -0.081 4.081 20 N -0.063 5.063 21 N -0.093 5.093 22 C -0.081 4.081 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.127 4.127 27 C -0.105 4.105 28 C -0.055 4.055 29 C 0.023 3.977 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.196 0.804 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.193 0.807 45 H 0.060 0.940 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.726 -10.384 -7.818 15.655 hybrid contribution 1.419 -1.975 -0.514 2.486 sum 10.145 -12.359 -8.332 18.030 Atomic orbital electron populations 1.70833 1.07160 1.30696 1.45415 1.25377 0.95782 1.00591 0.99832 0.83916 0.75384 0.77336 0.76525 1.22185 1.21928 1.22142 1.19914 1.09204 0.92316 1.26469 0.91854 1.44428 1.38273 1.05063 1.42803 1.20630 0.86773 1.01683 0.90487 1.21105 0.99414 0.94557 1.02481 1.20938 0.99843 0.97469 0.96473 1.21680 0.93835 1.01480 0.98097 1.22974 0.93928 0.99637 0.83243 0.90275 1.45942 1.18486 1.48524 1.18908 1.17345 0.82269 0.80929 0.83920 1.90562 1.57239 1.38899 1.55491 1.23117 0.92224 0.96092 0.96703 1.72794 1.28880 1.06548 0.98043 1.72666 1.14595 1.16023 1.05972 1.24793 0.90462 0.92469 1.00415 1.18917 0.96568 0.99485 0.94323 1.20914 0.92075 0.98516 1.00418 1.21134 0.99891 0.96576 0.94068 1.21253 0.96380 0.99157 0.95868 1.22080 0.92524 0.94135 1.01799 1.18638 0.94312 0.98276 0.94300 1.20641 0.96273 0.86245 0.94588 0.91266 0.95733 0.88641 0.94120 0.90980 0.91716 0.92528 0.93453 0.90753 0.75112 0.80392 0.84332 0.85099 0.84933 0.80734 0.94016 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.98 55.49 0.66 -24.77 16 2 C -0.01 -0.36 4.54 -17.43 -0.08 -0.44 16 3 Si 1.04 25.30 30.06 -169.99 -5.11 20.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.35 -9.41 9.47 -15.06 -0.14 -9.56 16 8 H 0.06 1.80 8.05 -52.49 -0.42 1.38 16 9 N -0.58 -13.76 2.62 -175.40 -0.46 -14.22 16 10 C 0.13 2.83 5.22 -5.21 -0.03 2.80 16 11 C -0.14 -2.63 4.95 -30.19 -0.15 -2.78 16 12 C -0.11 -1.78 5.76 -28.40 -0.16 -1.95 16 13 C -0.11 -1.92 5.23 -27.19 -0.14 -2.06 16 14 C 0.11 1.99 2.91 -66.22 -0.19 1.80 16 15 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 16 N -0.67 -12.50 5.07 -53.07 -0.27 -12.77 16 17 C 0.57 10.57 7.60 -12.30 -0.09 10.47 16 18 O -0.54 -10.30 13.24 5.33 0.07 -10.23 16 19 C 0.08 1.32 6.90 -82.42 -0.57 0.76 16 20 N -0.23 -4.09 10.70 33.56 0.36 -3.73 16 21 N -0.26 -4.24 11.42 30.90 0.35 -3.89 16 22 C 0.09 1.13 11.20 -16.75 -0.19 0.95 16 23 C -0.09 -1.06 5.75 -106.85 -0.61 -1.67 16 24 C -0.10 -0.87 9.84 -39.55 -0.39 -1.26 16 25 C -0.10 -0.80 9.95 -39.87 -0.40 -1.20 16 26 C -0.11 -1.06 9.95 -39.83 -0.40 -1.46 16 27 C -0.09 -1.16 9.27 -39.66 -0.37 -1.52 16 28 C -0.05 -0.71 5.77 -106.57 -0.61 -1.33 16 29 C 0.15 3.18 4.75 -4.92 -0.02 3.15 16 30 H 0.27 7.52 4.94 -40.82 -0.20 7.31 16 31 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.10 2.41 5.58 -51.93 -0.29 2.12 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.57 4.67 -51.93 -0.24 1.33 16 35 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.45 6.58 -51.93 -0.34 1.11 16 39 H 0.41 7.99 7.83 -40.82 -0.32 7.67 16 40 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.18 2.58 5.11 -52.48 -0.27 2.31 16 45 H 0.04 0.95 7.81 -51.93 -0.41 0.54 16 46 H 0.04 0.79 6.89 -51.93 -0.36 0.43 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -31.20 361.55 -9.24 -40.43 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.75 Total: 8.83 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.55 Total: -5.29 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.65 Total: -59.38 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.11 Total: 20.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.20 -9.24 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034307566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.701 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds