Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00625 * 3 2 1 5 5 H 1.48507 * 109.46969 * 30.00209 * 3 2 1 6 6 H 1.48499 * 109.47389 * 150.00178 * 3 2 1 7 7 C 1.38811 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00320 * 195.67448 * 7 2 1 9 9 N 1.36941 * 119.99909 * 15.67185 * 7 2 1 10 10 C 1.47606 * 118.64080 * 26.50971 * 9 7 2 11 11 C 1.53947 * 112.13917 * 137.87226 * 10 9 7 12 12 C 1.50887 * 110.09067 * 319.42882 * 11 10 9 13 13 C 1.52567 * 109.35364 * 91.89539 * 12 11 10 14 14 C 1.47093 * 114.32456 * 274.98044 * 13 12 11 15 15 H 1.08993 * 109.33007 * 302.70932 * 14 13 12 16 16 N 1.46509 * 109.32538 * 183.06080 * 14 13 12 17 17 C 1.34776 * 119.99431 * 154.65100 * 16 14 13 18 18 O 1.21538 * 120.00615 * 0.02562 * 17 16 14 19 19 C 1.47922 * 119.99608 * 179.97438 * 17 16 14 20 20 C 1.38938 * 119.84766 * 179.97438 * 19 17 16 21 21 C 1.40646 * 117.39242 * 180.02562 * 20 19 17 22 22 C 1.40254 * 122.04427 * 180.02562 * 21 20 19 23 23 C 1.36267 * 119.47428 * 179.97438 * 22 21 20 24 24 C 1.39322 * 120.87806 * 359.97438 * 23 22 21 25 25 C 1.36231 * 121.15254 * 0.02562 * 24 23 22 26 26 C 1.40331 * 119.68458 * 359.95503 * 25 24 23 27 27 N 1.33819 * 121.62120 * 180.02562 * 26 25 24 28 28 N 1.28439 * 121.68876 * 179.97438 * 27 26 25 29 29 C 1.44654 * 118.81273 * 206.52048 * 9 7 2 30 30 H 0.97002 * 120.00718 * 359.97438 * 1 2 3 31 31 H 1.08996 * 108.95243 * 17.18261 * 10 9 7 32 32 H 1.09004 * 108.94420 * 258.55122 * 10 9 7 33 33 H 1.08999 * 109.36818 * 199.24182 * 11 10 9 34 34 H 1.09000 * 109.26952 * 79.55530 * 11 10 9 35 35 H 1.09002 * 109.49054 * 331.92884 * 12 11 10 36 36 H 1.09003 * 109.48843 * 211.85780 * 12 11 10 37 37 H 1.09003 * 108.50834 * 153.72507 * 13 12 11 38 38 H 1.09000 * 108.39133 * 36.15047 * 13 12 11 39 39 H 0.96999 * 120.00058 * 334.65693 * 16 14 13 40 40 H 1.08004 * 121.30288 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.26289 * 359.95010 * 22 21 20 42 42 H 1.08001 * 119.56281 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.42524 * 180.02562 * 24 23 22 44 44 H 1.08006 * 120.15915 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.61925 * 150.83239 * 29 9 7 46 46 H 1.08997 * 109.32816 * 30.88008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3638 -2.3659 -0.3214 10 6 0.1797 -2.2984 -1.2002 11 6 0.1719 -3.4238 -2.2506 12 6 1.5633 -3.6344 -2.7949 13 6 2.2713 -4.7063 -1.9719 14 6 2.9230 -4.2025 -0.7532 15 1 3.6394 -3.4262 -1.0218 16 7 3.6265 -5.3028 -0.0893 17 6 4.6794 -5.0437 0.7112 18 8 5.0450 -3.8974 0.8827 19 6 5.3894 -6.1546 1.3820 20 6 6.4748 -5.8841 2.2061 21 6 7.1119 -6.9789 2.8174 22 6 8.2156 -6.8178 3.6677 23 6 8.7925 -7.9155 4.2327 24 6 8.3002 -9.1935 3.9770 25 6 7.2300 -9.3853 3.1561 26 6 6.6080 -8.2800 2.5555 27 7 5.5542 -8.4237 1.7433 28 7 4.9836 -7.4129 1.1933 29 6 1.8662 -3.6127 0.2130 30 1 -0.4851 0.8400 0.0004 31 1 0.1734 -1.3362 -1.7123 32 1 -0.7194 -2.3782 -0.5892 33 1 -0.4980 -3.1522 -3.0664 34 1 -0.1783 -4.3460 -1.7871 35 1 2.1227 -2.7008 -2.7345 36 1 1.5023 -3.9556 -3.8348 37 1 3.0273 -5.1803 -2.5980 38 1 1.5381 -5.4604 -1.6858 39 1 3.3346 -6.2177 -0.2259 40 1 6.8164 -4.8727 2.3703 41 1 8.6053 -5.8317 3.8728 42 1 9.6427 -7.7931 4.8873 43 1 8.7752 -10.0470 4.4376 44 1 6.8619 -10.3832 2.9687 45 1 1.0443 -4.3195 0.3272 46 1 2.3249 -3.4299 1.1847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034337194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = 67.737669 kcal Electronic energy + Delta-G solvation = -28986.557040 eV Core-core repulsion = 25070.300684 eV Total energy + Delta-G solvation = -3916.256357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65099 -39.66202 -38.16229 -37.53530 -34.63130 -33.97469 -33.23567 -32.10301 -31.02013 -30.76874 -29.83599 -26.13908 -25.57671 -25.27824 -24.09508 -23.05410 -22.79176 -21.08830 -20.14820 -19.15876 -19.02465 -18.46549 -17.20984 -16.56167 -16.35683 -15.91372 -15.65569 -15.07501 -14.94557 -14.74194 -14.58056 -14.20034 -14.03421 -13.79616 -13.52000 -13.12756 -12.78181 -12.71344 -12.64163 -12.48395 -12.41987 -12.06623 -11.54760 -11.46408 -11.06533 -11.02170 -10.89837 -10.73936 -10.54032 -10.15259 -10.09334 -10.06418 -9.80809 -9.77078 -9.69196 -9.58971 -9.53718 -8.87359 -8.74207 -8.28740 -6.60141 -5.70976 -3.14441 -0.41624 0.06073 1.32289 2.12804 3.07868 3.13720 3.44118 3.50563 3.54080 3.63443 3.66722 3.91089 4.14465 4.22670 4.34999 4.58438 4.59982 4.68087 4.79814 5.13271 5.26597 5.29222 5.34221 5.40107 5.42837 5.50231 5.57024 5.74838 5.77641 5.80957 5.85771 6.02957 6.06956 6.19978 6.20968 6.34571 6.43700 6.63712 6.66543 6.71732 6.77476 6.86683 6.96881 7.13050 7.49783 7.73017 7.77224 7.95354 8.23071 8.40112 8.55338 9.31876 9.96945 10.41252 11.36644 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.002661 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.879065 B =10520.176321 C =11814.244404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.114 4.114 14 C 0.113 3.887 15 H 0.090 0.910 16 N -0.699 5.699 17 C 0.570 3.430 18 O -0.519 6.519 19 C 0.001 3.999 20 C -0.029 4.029 21 C -0.074 4.074 22 C -0.092 4.092 23 C -0.100 4.100 24 C -0.093 4.093 25 C -0.080 4.080 26 C 0.069 3.931 27 N -0.203 5.203 28 N -0.191 5.191 29 C 0.157 3.843 30 H 0.252 0.748 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.403 0.597 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.034 0.966 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.007 -19.204 4.651 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.152 4.152 14 C 0.007 3.993 15 H 0.108 0.892 16 N -0.349 5.349 17 C 0.351 3.649 18 O -0.394 6.394 19 C -0.133 4.133 20 C -0.060 4.060 21 C -0.083 4.083 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.101 4.101 26 C -0.058 4.058 27 N -0.059 5.059 28 N -0.049 5.049 29 C 0.027 3.973 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.238 0.762 40 H 0.186 0.814 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.052 0.948 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.042 -19.112 4.035 24.056 hybrid contribution 1.283 1.294 0.648 1.934 sum 15.325 -17.817 4.682 23.963 Atomic orbital electron populations 1.70079 1.05177 1.25313 1.54512 1.25017 0.95257 0.98317 1.00843 0.86307 0.79268 0.83733 0.77650 1.21506 1.21892 1.20334 1.19325 0.92698 0.84731 1.41653 0.91240 1.43613 1.32136 1.01474 1.53169 1.21064 0.88424 0.95830 0.89603 1.22087 0.95899 1.00676 0.99633 1.20826 0.97048 0.99353 0.96580 1.20585 0.99402 0.99039 0.96131 1.21379 0.96109 0.87846 0.94003 0.89168 1.46045 1.30446 1.11536 1.46828 1.17426 0.80828 0.86722 0.79898 1.90872 1.66271 1.20230 1.62033 1.22748 0.97015 0.94045 0.99532 1.22653 0.91880 1.00774 0.90649 1.18835 0.97493 0.93312 0.98627 1.21083 0.94119 1.00374 0.95550 1.21128 0.99731 0.92263 0.98800 1.21106 0.95607 0.97839 0.96826 1.20802 0.95273 0.98075 0.95959 1.20443 0.95085 0.93379 0.96894 1.73862 1.05190 1.22193 1.04687 1.73199 1.21238 0.96222 1.14253 1.20930 0.93433 0.88530 0.94371 0.93789 0.90631 0.95727 0.92889 0.93614 0.90468 0.93330 0.93257 0.92580 0.76174 0.81426 0.84056 0.84635 0.84486 0.83722 0.94797 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.53 11.01 55.49 0.61 -25.92 16 2 C 0.00 0.11 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 22.40 29.58 -169.99 -5.03 17.37 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -7.12 9.45 -15.06 -0.14 -7.26 16 8 H 0.07 2.01 7.88 -52.49 -0.41 1.59 16 9 N -0.58 -14.61 2.27 -172.03 -0.39 -15.00 16 10 C 0.18 4.18 4.66 -2.94 -0.01 4.16 16 11 C -0.14 -2.67 5.71 -27.30 -0.16 -2.83 16 12 C -0.10 -1.73 5.51 -28.01 -0.15 -1.88 16 13 C -0.11 -1.82 4.55 -29.79 -0.14 -1.96 16 14 C 0.11 2.08 2.34 -69.78 -0.16 1.92 16 15 H 0.09 1.95 7.57 -51.93 -0.39 1.55 16 16 N -0.70 -11.24 5.05 -56.54 -0.29 -11.52 16 17 C 0.57 9.72 7.75 -12.29 -0.10 9.62 16 18 O -0.52 -10.63 16.01 5.33 0.09 -10.55 16 19 C 0.00 0.01 6.82 -82.89 -0.57 -0.56 16 20 C -0.03 -0.35 9.51 -38.41 -0.37 -0.72 16 21 C -0.07 -0.78 5.75 -106.80 -0.61 -1.39 16 22 C -0.09 -0.68 9.81 -39.53 -0.39 -1.06 16 23 C -0.10 -0.54 9.96 -39.89 -0.40 -0.94 16 24 C -0.09 -0.51 9.94 -39.90 -0.40 -0.91 16 25 C -0.08 -0.62 10.00 -39.52 -0.40 -1.01 16 26 C 0.07 0.77 6.69 -84.78 -0.57 0.20 16 27 N -0.20 -2.70 11.55 32.24 0.37 -2.32 16 28 N -0.19 -2.72 10.70 33.24 0.36 -2.37 16 29 C 0.16 3.42 5.24 -4.04 -0.02 3.40 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.08 2.00 6.33 -51.93 -0.33 1.67 16 32 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 35 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.84 7.34 -51.93 -0.38 0.45 16 39 H 0.40 5.60 7.91 -40.82 -0.32 5.28 16 40 H 0.17 1.84 7.69 -52.48 -0.40 1.44 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 44 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 46 H 0.05 1.16 7.97 -51.93 -0.41 0.74 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -32.99 374.56 -9.64 -42.64 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.35 Total: 3.22 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -4.65 Total: -1.20 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.66 Total: -57.14 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.99 -9.64 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.376 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds