Wall clock time and date at job start Sat Apr 11 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00625 * 3 2 1 5 5 H 1.48507 * 109.46969 * 30.00209 * 3 2 1 6 6 H 1.48499 * 109.47389 * 150.00178 * 3 2 1 7 7 C 1.38811 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00320 * 195.67448 * 7 2 1 9 9 N 1.36941 * 119.99909 * 15.67185 * 7 2 1 10 10 C 1.47606 * 118.64080 * 26.50971 * 9 7 2 11 11 C 1.53947 * 112.13917 * 137.87226 * 10 9 7 12 12 C 1.50887 * 110.09067 * 319.42882 * 11 10 9 13 13 C 1.52567 * 109.35364 * 91.89539 * 12 11 10 14 14 C 1.47093 * 114.32456 * 274.98044 * 13 12 11 15 15 H 1.08993 * 109.33007 * 302.70932 * 14 13 12 16 16 N 1.46509 * 109.32538 * 183.06080 * 14 13 12 17 17 C 1.34776 * 119.99431 * 154.65100 * 16 14 13 18 18 O 1.21538 * 120.00615 * 0.02562 * 17 16 14 19 19 C 1.47922 * 119.99608 * 179.97438 * 17 16 14 20 20 C 1.38938 * 119.84766 * 179.97438 * 19 17 16 21 21 C 1.40646 * 117.39242 * 180.02562 * 20 19 17 22 22 C 1.40254 * 122.04427 * 180.02562 * 21 20 19 23 23 C 1.36267 * 119.47428 * 179.97438 * 22 21 20 24 24 C 1.39322 * 120.87806 * 359.97438 * 23 22 21 25 25 C 1.36231 * 121.15254 * 0.02562 * 24 23 22 26 26 C 1.40331 * 119.68458 * 359.95503 * 25 24 23 27 27 N 1.33819 * 121.62120 * 180.02562 * 26 25 24 28 28 N 1.28439 * 121.68876 * 179.97438 * 27 26 25 29 29 C 1.44654 * 118.81273 * 206.52048 * 9 7 2 30 30 H 0.97002 * 120.00718 * 359.97438 * 1 2 3 31 31 H 1.08996 * 108.95243 * 17.18261 * 10 9 7 32 32 H 1.09004 * 108.94420 * 258.55122 * 10 9 7 33 33 H 1.08999 * 109.36818 * 199.24182 * 11 10 9 34 34 H 1.09000 * 109.26952 * 79.55530 * 11 10 9 35 35 H 1.09002 * 109.49054 * 331.92884 * 12 11 10 36 36 H 1.09003 * 109.48843 * 211.85780 * 12 11 10 37 37 H 1.09003 * 108.50834 * 153.72507 * 13 12 11 38 38 H 1.09000 * 108.39133 * 36.15047 * 13 12 11 39 39 H 0.96999 * 120.00058 * 334.65693 * 16 14 13 40 40 H 1.08004 * 121.30288 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.26289 * 359.95010 * 22 21 20 42 42 H 1.08001 * 119.56281 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.42524 * 180.02562 * 24 23 22 44 44 H 1.08006 * 120.15915 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.61925 * 150.83239 * 29 9 7 46 46 H 1.08997 * 109.32816 * 30.88008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0601 -1.2196 0.2521 9 7 1.3638 -2.3659 -0.3214 10 6 0.1797 -2.2984 -1.2002 11 6 0.1719 -3.4238 -2.2506 12 6 1.5633 -3.6344 -2.7949 13 6 2.2713 -4.7063 -1.9719 14 6 2.9230 -4.2025 -0.7532 15 1 3.6394 -3.4262 -1.0218 16 7 3.6265 -5.3028 -0.0893 17 6 4.6794 -5.0437 0.7112 18 8 5.0450 -3.8974 0.8827 19 6 5.3894 -6.1546 1.3820 20 6 6.4748 -5.8841 2.2061 21 6 7.1119 -6.9789 2.8174 22 6 8.2156 -6.8178 3.6677 23 6 8.7925 -7.9155 4.2327 24 6 8.3002 -9.1935 3.9770 25 6 7.2300 -9.3853 3.1561 26 6 6.6080 -8.2800 2.5555 27 7 5.5542 -8.4237 1.7433 28 7 4.9836 -7.4129 1.1933 29 6 1.8662 -3.6127 0.2130 30 1 -0.4851 0.8400 0.0004 31 1 0.1734 -1.3362 -1.7123 32 1 -0.7194 -2.3782 -0.5892 33 1 -0.4980 -3.1522 -3.0664 34 1 -0.1783 -4.3460 -1.7871 35 1 2.1227 -2.7008 -2.7345 36 1 1.5023 -3.9556 -3.8348 37 1 3.0273 -5.1803 -2.5980 38 1 1.5381 -5.4604 -1.6858 39 1 3.3346 -6.2177 -0.2259 40 1 6.8164 -4.8727 2.3703 41 1 8.6053 -5.8317 3.8728 42 1 9.6427 -7.7931 4.8873 43 1 8.7752 -10.0470 4.4376 44 1 6.8619 -10.3832 2.9687 45 1 1.0443 -4.3195 0.3272 46 1 2.3249 -3.4299 1.1847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034337194.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:18 Heat of formation + Delta-G solvation = 46.227941 kcal Electronic energy + Delta-G solvation = -28987.489772 eV Core-core repulsion = 25070.300684 eV Total energy + Delta-G solvation = -3917.189088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51746 -41.01388 -39.35229 -38.69510 -36.32010 -34.88941 -34.84513 -33.05345 -32.78921 -31.82331 -31.12486 -27.96021 -26.59704 -26.32052 -25.61581 -24.74602 -23.51236 -22.30977 -21.66127 -20.91119 -19.78599 -19.57561 -18.60554 -18.13996 -17.41290 -17.10836 -16.78300 -16.56908 -16.34522 -15.76169 -15.67280 -15.59933 -15.30536 -15.20265 -14.76172 -14.54443 -14.27683 -14.10905 -13.83784 -13.53996 -13.41703 -13.13293 -13.02045 -13.01684 -12.83465 -12.48747 -12.37869 -12.20032 -12.04335 -11.92831 -11.67296 -11.48915 -11.41217 -11.21357 -11.15449 -10.98729 -10.55298 -10.47138 -10.21023 -9.47888 -8.65940 -7.87895 -5.34172 -1.19088 -0.77236 0.62567 1.23146 1.42634 1.43093 1.53376 1.88095 2.08256 2.49858 2.68143 2.80789 3.15726 3.24459 3.29363 3.43008 3.69989 3.72425 3.80824 3.89284 4.08646 4.11586 4.17157 4.25074 4.38153 4.43978 4.49038 4.52847 4.67612 4.69604 4.73687 4.90441 4.98590 5.02495 5.05532 5.08354 5.19916 5.22887 5.24517 5.31685 5.34646 5.37760 5.59707 5.62604 5.69476 5.70319 5.82740 6.37974 6.42383 7.05980 7.17345 7.32458 7.92233 8.28913 9.16701 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.002661 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.879065 B =10520.176321 C =11814.244404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.051 0.949 9 N -0.596 5.596 10 C 0.184 3.816 11 C -0.132 4.132 12 C -0.096 4.096 13 C -0.111 4.111 14 C 0.133 3.867 15 H 0.054 0.946 16 N -0.690 5.690 17 C 0.571 3.429 18 O -0.564 6.564 19 C -0.024 4.024 20 C -0.032 4.032 21 C -0.083 4.083 22 C -0.104 4.104 23 C -0.081 4.081 24 C -0.070 4.070 25 C -0.097 4.097 26 C 0.053 3.947 27 N -0.220 5.220 28 N -0.208 5.208 29 C 0.159 3.841 30 H 0.250 0.750 31 H 0.042 0.958 32 H -0.005 1.005 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.417 0.583 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.176 0.824 43 H 0.179 0.821 44 H 0.160 0.840 45 H 0.048 0.952 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.471 -22.185 5.289 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.069 0.931 9 N -0.318 5.318 10 C 0.059 3.941 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.149 4.149 14 C 0.026 3.974 15 H 0.073 0.927 16 N -0.340 5.340 17 C 0.354 3.646 18 O -0.442 6.442 19 C -0.158 4.158 20 C -0.062 4.062 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.091 4.091 25 C -0.118 4.118 26 C -0.075 4.075 27 N -0.076 5.076 28 N -0.067 5.067 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.254 0.746 40 H 0.188 0.812 41 H 0.178 0.822 42 H 0.193 0.807 43 H 0.196 0.804 44 H 0.178 0.822 45 H 0.067 0.933 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 16.508 -22.153 4.660 28.017 hybrid contribution 0.722 2.041 0.675 2.268 sum 17.230 -20.111 5.335 27.015 Atomic orbital electron populations 1.70218 1.06238 1.25711 1.55598 1.25676 0.96071 1.01059 1.01131 0.85373 0.77945 0.80037 0.77771 1.20739 1.21605 1.20344 1.19372 0.92105 0.86354 1.41393 0.93124 1.43748 1.32352 1.01695 1.53999 1.20882 0.86628 0.96611 0.89938 1.21953 0.97499 0.99061 0.98514 1.20798 0.95563 0.98241 0.98800 1.20547 1.00411 0.99055 0.94887 1.20863 0.94340 0.87868 0.94287 0.92731 1.45870 1.30115 1.11549 1.46457 1.17832 0.80586 0.86909 0.79225 1.90836 1.67561 1.22256 1.63544 1.22295 0.98450 0.93500 1.01537 1.22778 0.91393 1.01703 0.90298 1.19068 0.98462 0.92423 0.99171 1.21405 0.93297 1.02406 0.95202 1.21680 0.99644 0.91412 0.97328 1.21658 0.93700 0.99312 0.94387 1.21114 0.96213 0.97762 0.96665 1.20890 0.94822 0.94843 0.96895 1.73735 1.06418 1.21831 1.05644 1.73090 1.22120 0.96075 1.15374 1.20979 0.94408 0.87832 0.93734 0.94061 0.93959 0.98703 0.90872 0.91759 0.93924 0.89710 0.90711 0.90324 0.74553 0.81176 0.82150 0.80680 0.80377 0.82243 0.93348 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 11.01 21.65 0.24 -56.55 16 2 C -0.04 -2.58 4.87 84.86 0.41 -2.17 16 3 Si 0.96 47.77 29.58 68.60 2.03 49.80 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.26 -15.47 9.45 84.03 0.79 -14.68 16 8 H 0.05 3.13 7.88 -2.91 -0.02 3.11 16 9 N -0.60 -31.35 2.27 -698.18 -1.59 -32.93 16 10 C 0.18 9.07 4.66 86.49 0.40 9.48 16 11 C -0.13 -4.74 5.71 30.23 0.17 -4.57 16 12 C -0.10 -3.18 5.51 29.76 0.16 -3.02 16 13 C -0.11 -3.40 4.55 28.61 0.13 -3.27 16 14 C 0.13 5.07 2.34 43.79 0.10 5.17 16 15 H 0.05 2.50 7.57 -2.39 -0.02 2.48 16 16 N -0.69 -22.91 5.05 -451.08 -2.28 -25.19 16 17 C 0.57 20.71 7.75 86.81 0.67 21.38 16 18 O -0.56 -24.90 16.01 -3.84 -0.06 -24.96 16 19 C -0.02 -0.74 6.82 41.62 0.28 -0.46 16 20 C -0.03 -0.81 9.51 23.03 0.22 -0.59 16 21 C -0.08 -1.67 5.75 -21.28 -0.12 -1.79 16 22 C -0.10 -1.23 9.81 22.30 0.22 -1.01 16 23 C -0.08 -0.49 9.96 22.07 0.22 -0.27 16 24 C -0.07 -0.42 9.94 22.06 0.22 -0.20 16 25 C -0.10 -1.22 10.00 22.31 0.22 -0.99 16 26 C 0.05 1.12 6.69 40.27 0.27 1.39 16 27 N -0.22 -5.86 11.55 -51.93 -0.60 -6.46 16 28 N -0.21 -6.12 10.70 -48.74 -0.52 -6.64 16 29 C 0.16 7.24 5.24 87.36 0.46 7.70 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.04 2.34 6.33 -2.39 -0.02 2.32 16 32 H -0.01 -0.28 8.03 -2.38 -0.02 -0.30 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.10 7.31 -2.39 -0.02 2.08 16 35 H 0.04 1.73 7.48 -2.39 -0.02 1.71 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.11 7.34 -2.39 -0.02 2.09 16 39 H 0.42 11.61 7.91 -92.71 -0.73 10.87 16 40 H 0.17 4.01 7.69 -2.91 -0.02 3.99 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 43 H 0.18 -0.31 8.06 -2.91 -0.02 -0.34 16 44 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 46 H 0.02 0.79 7.97 -2.39 -0.02 0.77 16 Total: -1.00 -78.86 374.56 2.34 -76.52 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.28 Total: 14.31 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 4.84 Total: 12.11 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -4.75 Total: -127.78 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -78.86 2.34 -76.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337194.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.744 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds