Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50174 * 120.53639 * 352.84291 * 9 7 2 11 11 C 1.46246 * 107.52763 * 109.56731 * 10 9 7 12 12 C 1.52524 * 114.27473 * 58.41316 * 11 10 9 13 13 C 1.50127 * 105.41056 * 270.58696 * 12 11 10 14 14 C 1.54848 * 110.81324 * 97.69134 * 13 12 11 15 15 H 1.08998 * 109.36080 * 81.33610 * 14 13 12 16 16 N 1.46504 * 109.35752 * 200.92532 * 14 13 12 17 17 C 1.34768 * 120.00048 * 204.99495 * 16 14 13 18 18 O 1.21542 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.47919 * 120.00281 * 179.97438 * 17 16 14 20 20 C 1.38932 * 119.85084 * 179.72948 * 19 17 16 21 21 C 1.40646 * 117.39062 * 179.75345 * 20 19 17 22 22 C 1.40253 * 122.03525 * 180.22240 * 21 20 19 23 23 C 1.36274 * 119.47636 * 180.30393 * 22 21 20 24 24 C 1.39329 * 120.87008 * 359.97438 * 23 22 21 25 25 C 1.36230 * 121.15727 * 0.02562 * 24 23 22 26 26 C 1.40333 * 119.68428 * 359.97438 * 25 24 23 27 27 N 1.33820 * 121.62935 * 179.97438 * 26 25 24 28 28 N 1.28434 * 121.69272 * 180.02562 * 27 26 25 29 29 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.08994 * 109.85105 * 229.07495 * 10 9 7 32 32 H 1.09005 * 109.84577 * 349.99541 * 10 9 7 33 33 H 1.08999 * 108.51668 * 179.65368 * 11 10 9 34 34 H 1.08994 * 108.52269 * 297.32381 * 11 10 9 35 35 H 1.08992 * 110.25202 * 29.55996 * 12 11 10 36 36 H 1.08998 * 110.24544 * 151.47699 * 12 11 10 37 37 H 1.09003 * 109.20533 * 218.02647 * 13 12 11 38 38 H 1.08999 * 109.21472 * 337.34360 * 13 12 11 39 39 H 0.97006 * 119.99627 * 24.99841 * 16 14 13 40 40 H 1.07998 * 121.30360 * 359.97438 * 20 19 17 41 41 H 1.07994 * 120.26249 * 0.32138 * 22 21 20 42 42 H 1.07996 * 119.56699 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.42279 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.15788 * 180.02562 * 25 24 23 45 45 H 1.08998 * 108.16066 * 33.30621 * 29 9 7 46 46 H 1.09004 * 108.15966 * 149.87646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4448 -2.0530 1.7457 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4752 -4.2700 1.0126 13 6 0.0458 -4.3962 -0.3897 14 6 1.5915 -4.4894 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1135 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3015 -1.4249 19 6 3.7976 -4.1950 -3.4782 20 6 5.0315 -4.6670 -3.9081 21 6 5.4621 -4.2787 -5.1895 22 6 6.6886 -4.7020 -5.7222 23 6 7.0571 -4.2890 -6.9675 24 6 6.2317 -3.4533 -7.7168 25 6 5.0343 -3.0237 -7.2295 26 6 4.6193 -3.4272 -5.9510 27 7 3.4512 -3.0282 -5.4340 28 7 3.0704 -3.3963 -4.2639 29 6 2.1840 -3.5379 0.6658 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8347 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2635 -4.6388 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3694 -5.2943 -0.8471 38 1 -0.2633 -3.5249 -0.9670 39 1 1.5691 -3.5331 -2.2918 40 1 5.6348 -5.3098 -3.2842 41 1 7.3356 -5.3504 -5.1502 42 1 8.0013 -4.6137 -7.3789 43 1 6.5467 -3.1405 -8.7014 44 1 4.4070 -2.3764 -7.8244 45 1 3.2404 -3.3972 0.4372 46 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034337197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = 78.777050 kcal Electronic energy + Delta-G solvation = -29674.557526 eV Core-core repulsion = 25758.779873 eV Total energy + Delta-G solvation = -3915.777653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.49732 -39.55483 -38.18014 -37.66363 -34.55420 -33.83385 -33.30902 -32.00198 -31.11621 -30.71385 -29.81170 -26.24384 -25.44008 -25.15574 -24.03492 -22.82900 -22.65182 -21.13609 -20.22240 -19.30009 -18.85745 -18.36490 -17.10635 -17.01312 -16.25164 -15.70094 -15.53823 -15.05780 -14.94707 -14.73602 -14.47130 -14.29579 -13.88743 -13.63493 -13.58807 -13.45560 -12.69469 -12.62340 -12.54189 -12.42320 -12.29683 -12.13137 -11.81796 -11.33451 -11.05626 -10.92467 -10.85968 -10.55487 -10.39240 -10.16335 -9.99705 -9.92050 -9.80259 -9.75521 -9.66248 -9.63173 -9.42724 -8.78297 -8.62279 -8.11334 -6.93550 -6.13092 -2.97411 -0.27650 0.21448 1.45455 2.26481 3.17881 3.31762 3.55867 3.61132 3.77637 3.80140 3.81744 4.05777 4.28242 4.37366 4.48042 4.65128 4.70502 4.81015 4.92797 5.17530 5.21561 5.25844 5.33645 5.39220 5.43020 5.48474 5.54173 5.72820 5.86567 5.92577 5.94516 5.96694 5.99653 6.03017 6.25843 6.32808 6.35503 6.38648 6.62058 6.69365 6.70380 6.86786 6.91111 7.03533 7.26078 7.27953 7.87572 8.05149 8.41130 8.52115 8.57601 9.11600 9.89135 10.32474 11.17327 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003458 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.643285 B = 8096.303384 C = 9445.799232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.013 4.013 3 Si 1.034 2.966 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.352 4.352 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.129 3.871 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.113 4.113 14 C 0.111 3.889 15 H 0.078 0.922 16 N -0.676 5.676 17 C 0.572 3.428 18 O -0.547 6.547 19 C 0.003 3.997 20 C -0.034 4.034 21 C -0.075 4.075 22 C -0.094 4.094 23 C -0.100 4.100 24 C -0.096 4.096 25 C -0.077 4.077 26 C 0.068 3.932 27 N -0.199 5.199 28 N -0.183 5.183 29 C 0.154 3.846 30 H 0.273 0.727 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.166 0.834 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.041 0.959 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 -11.096 -11.773 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.215 4.215 3 Si 0.864 3.136 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.480 4.480 8 H 0.081 0.919 9 N -0.306 5.306 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.147 4.147 13 C -0.151 4.151 14 C 0.003 3.997 15 H 0.096 0.904 16 N -0.324 5.324 17 C 0.354 3.646 18 O -0.425 6.425 19 C -0.131 4.131 20 C -0.064 4.064 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.098 4.098 26 C -0.059 4.059 27 N -0.055 5.055 28 N -0.040 5.040 29 C 0.023 3.977 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.183 0.817 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.059 0.941 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.144 -9.089 -11.264 16.608 hybrid contribution 1.293 -2.134 -0.427 2.532 sum 9.437 -11.223 -11.691 18.753 Atomic orbital electron populations 1.70864 1.07156 1.30616 1.45494 1.25359 0.95766 1.00542 0.99863 0.83973 0.75759 0.77624 0.76236 1.21291 1.22286 1.22360 1.19874 1.09306 0.92394 1.26416 0.91912 1.44405 1.38888 1.04946 1.42385 1.20607 0.86833 1.01615 0.90412 1.21105 0.99423 0.94544 1.02466 1.20937 0.99843 0.97487 0.96480 1.21679 0.93922 1.01425 0.98042 1.22933 0.93920 0.99529 0.83292 0.90443 1.45906 1.19010 1.48696 1.18784 1.17376 0.82274 0.80921 0.84015 1.90752 1.57669 1.38475 1.55643 1.22709 0.94450 0.98426 0.97517 1.22566 0.94702 0.95311 0.93871 1.18816 0.96532 0.98276 0.94664 1.21033 0.94482 0.99630 0.96185 1.21100 0.99960 0.96705 0.94197 1.21079 0.93704 0.96521 1.00388 1.20824 0.96709 0.99283 0.92998 1.20489 0.93034 0.95974 0.96428 1.73932 1.11614 1.15680 1.04321 1.73306 1.26733 1.05513 0.98492 1.20628 0.96243 0.86252 0.94578 0.91345 0.95784 0.88711 0.94158 0.90956 0.91734 0.92559 0.93520 0.90760 0.75208 0.81695 0.84249 0.84754 0.84550 0.83698 0.94091 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.99 55.49 0.67 -24.90 16 2 C -0.01 -0.35 4.53 -17.43 -0.08 -0.43 16 3 Si 1.03 25.33 30.06 -169.99 -5.11 20.22 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.35 -9.54 9.46 -15.06 -0.14 -9.68 16 8 H 0.06 1.80 8.05 -52.48 -0.42 1.38 16 9 N -0.59 -13.99 2.62 -175.39 -0.46 -14.45 16 10 C 0.13 2.89 5.22 -5.20 -0.03 2.86 16 11 C -0.14 -2.66 4.96 -30.19 -0.15 -2.81 16 12 C -0.11 -1.82 5.76 -28.40 -0.16 -1.98 16 13 C -0.11 -1.95 5.23 -27.19 -0.14 -2.09 16 14 C 0.11 2.06 2.91 -66.22 -0.19 1.87 16 15 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 16 N -0.68 -12.80 5.07 -53.07 -0.27 -13.07 16 17 C 0.57 10.70 7.62 -12.30 -0.09 10.61 16 18 O -0.55 -10.99 16.02 5.33 0.09 -10.90 16 19 C 0.00 0.05 6.82 -82.89 -0.57 -0.52 16 20 C -0.03 -0.47 9.51 -38.42 -0.37 -0.83 16 21 C -0.07 -0.91 5.75 -106.80 -0.61 -1.53 16 22 C -0.09 -0.81 9.81 -39.53 -0.39 -1.20 16 23 C -0.10 -0.68 9.96 -39.88 -0.40 -1.08 16 24 C -0.10 -0.69 9.94 -39.90 -0.40 -1.08 16 25 C -0.08 -0.76 10.00 -39.52 -0.40 -1.16 16 26 C 0.07 0.92 6.69 -84.78 -0.57 0.35 16 27 N -0.20 -3.29 11.55 32.24 0.37 -2.92 16 28 N -0.18 -3.26 10.70 33.24 0.36 -2.91 16 29 C 0.15 3.26 4.75 -4.93 -0.02 3.24 16 30 H 0.27 7.54 4.95 -40.82 -0.20 7.34 16 31 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.09 2.41 5.61 -51.93 -0.29 2.12 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.59 4.65 -51.93 -0.24 1.35 16 35 H 0.06 1.06 6.28 -51.93 -0.33 0.73 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.46 6.58 -51.93 -0.34 1.12 16 39 H 0.41 8.02 7.77 -40.82 -0.32 7.70 16 40 H 0.17 1.96 7.69 -52.49 -0.40 1.55 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.04 0.96 7.81 -51.93 -0.41 0.55 16 46 H 0.04 0.79 6.89 -51.93 -0.36 0.43 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -31.87 366.85 -9.41 -41.29 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.88 Total: 7.57 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.70 Total: -5.45 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.66 Total: -58.25 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.11 Total: 20.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.87 -9.41 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.064 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds