Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50174 * 120.53639 * 352.84291 * 9 7 2 11 11 C 1.46246 * 107.52763 * 109.56731 * 10 9 7 12 12 C 1.52524 * 114.27473 * 58.41316 * 11 10 9 13 13 C 1.50127 * 105.41056 * 270.58696 * 12 11 10 14 14 C 1.54848 * 110.81324 * 97.69134 * 13 12 11 15 15 H 1.08998 * 109.36080 * 81.33610 * 14 13 12 16 16 N 1.46504 * 109.35752 * 200.92532 * 14 13 12 17 17 C 1.34768 * 120.00048 * 204.99495 * 16 14 13 18 18 O 1.21542 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.47919 * 120.00281 * 179.97438 * 17 16 14 20 20 C 1.38932 * 119.85084 * 179.72948 * 19 17 16 21 21 C 1.40646 * 117.39062 * 179.75345 * 20 19 17 22 22 C 1.40253 * 122.03525 * 180.22240 * 21 20 19 23 23 C 1.36274 * 119.47636 * 180.30393 * 22 21 20 24 24 C 1.39329 * 120.87008 * 359.97438 * 23 22 21 25 25 C 1.36230 * 121.15727 * 0.02562 * 24 23 22 26 26 C 1.40333 * 119.68428 * 359.97438 * 25 24 23 27 27 N 1.33820 * 121.62935 * 179.97438 * 26 25 24 28 28 N 1.28434 * 121.69272 * 180.02562 * 27 26 25 29 29 C 1.43432 * 120.53643 * 172.56971 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.08994 * 109.85105 * 229.07495 * 10 9 7 32 32 H 1.09005 * 109.84577 * 349.99541 * 10 9 7 33 33 H 1.08999 * 108.51668 * 179.65368 * 11 10 9 34 34 H 1.08994 * 108.52269 * 297.32381 * 11 10 9 35 35 H 1.08992 * 110.25202 * 29.55996 * 12 11 10 36 36 H 1.08998 * 110.24544 * 151.47699 * 12 11 10 37 37 H 1.09003 * 109.20533 * 218.02647 * 13 12 11 38 38 H 1.08999 * 109.21472 * 337.34360 * 13 12 11 39 39 H 0.97006 * 119.99627 * 24.99841 * 16 14 13 40 40 H 1.07998 * 121.30360 * 359.97438 * 20 19 17 41 41 H 1.07994 * 120.26249 * 0.32138 * 22 21 20 42 42 H 1.07996 * 119.56699 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.42279 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.15788 * 180.02562 * 25 24 23 45 45 H 1.08998 * 108.16066 * 33.30621 * 29 9 7 46 46 H 1.09004 * 108.15966 * 149.87646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4448 -2.0530 1.7457 11 6 -0.7130 -2.7783 1.2239 12 6 -0.4752 -4.2700 1.0126 13 6 0.0458 -4.3962 -0.3897 14 6 1.5915 -4.4894 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1135 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3015 -1.4249 19 6 3.7976 -4.1950 -3.4782 20 6 5.0315 -4.6670 -3.9081 21 6 5.4621 -4.2787 -5.1895 22 6 6.6886 -4.7020 -5.7222 23 6 7.0571 -4.2890 -6.9675 24 6 6.2317 -3.4533 -7.7168 25 6 5.0343 -3.0237 -7.2295 26 6 4.6193 -3.4272 -5.9510 27 7 3.4512 -3.0282 -5.4340 28 7 3.0704 -3.3963 -4.2639 29 6 2.1840 -3.5379 0.6658 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8347 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2689 35 1 0.2635 -4.6388 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3694 -5.2943 -0.8471 38 1 -0.2633 -3.5249 -0.9670 39 1 1.5691 -3.5331 -2.2918 40 1 5.6348 -5.3098 -3.2842 41 1 7.3356 -5.3504 -5.1502 42 1 8.0013 -4.6137 -7.3789 43 1 6.5467 -3.1405 -8.7014 44 1 4.4070 -2.3764 -7.8244 45 1 3.2404 -3.3972 0.4372 46 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034337197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = 58.422977 kcal Electronic energy + Delta-G solvation = -29675.440145 eV Core-core repulsion = 25758.779873 eV Total energy + Delta-G solvation = -3916.660272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52339 -40.99048 -39.61547 -38.73587 -36.20285 -34.96925 -34.85442 -33.19274 -32.74906 -31.81179 -31.19751 -27.95058 -26.56356 -26.34881 -25.47108 -24.57040 -23.53009 -22.56187 -21.74180 -20.91819 -19.80596 -19.58864 -19.02095 -18.10684 -17.20601 -17.14307 -16.89055 -16.49789 -16.32738 -15.85244 -15.68176 -15.62933 -15.51085 -15.13696 -15.06416 -14.52087 -14.33799 -13.98244 -13.80200 -13.54027 -13.50045 -13.39968 -13.02661 -12.78096 -12.58017 -12.48611 -12.22621 -12.19499 -11.96692 -11.93454 -11.77825 -11.54961 -11.30079 -11.19323 -11.17176 -10.96342 -10.51800 -10.40437 -10.05247 -9.49466 -8.87373 -8.28728 -5.08136 -1.19438 -0.77163 0.61277 1.21697 1.55573 1.59590 1.79937 1.95134 2.10410 2.66204 2.68847 2.79637 3.11940 3.16810 3.30134 3.43192 3.45364 3.70183 3.76368 3.81773 3.99093 4.10185 4.14767 4.22758 4.36212 4.40450 4.41296 4.45388 4.51156 4.65891 4.68051 4.72889 4.88862 4.91359 5.04699 5.05235 5.10758 5.12983 5.22213 5.27920 5.29094 5.38759 5.49222 5.53165 5.63400 5.68672 5.90051 6.38566 6.49628 6.97665 7.09909 7.34686 7.86695 8.29811 9.03948 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003458 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.643285 B = 8096.303384 C = 9445.799232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.054 4.054 3 Si 1.077 2.923 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.350 4.350 8 H 0.037 0.963 9 N -0.597 5.597 10 C 0.132 3.868 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.104 4.104 14 C 0.117 3.883 15 H 0.089 0.911 16 N -0.682 5.682 17 C 0.573 3.427 18 O -0.566 6.566 19 C -0.031 4.031 20 C -0.028 4.028 21 C -0.084 4.084 22 C -0.099 4.099 23 C -0.081 4.081 24 C -0.068 4.068 25 C -0.103 4.103 26 C 0.050 3.950 27 N -0.231 5.231 28 N -0.219 5.219 29 C 0.157 3.843 30 H 0.271 0.729 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.406 0.594 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.179 0.821 44 H 0.153 0.847 45 H 0.010 0.990 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -12.810 -13.512 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.253 4.253 3 Si 0.905 3.095 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.479 4.479 8 H 0.055 0.945 9 N -0.320 5.320 10 C 0.009 3.991 11 C -0.168 4.168 12 C -0.137 4.137 13 C -0.143 4.143 14 C 0.010 3.990 15 H 0.107 0.893 16 N -0.329 5.329 17 C 0.357 3.643 18 O -0.446 6.446 19 C -0.165 4.165 20 C -0.058 4.058 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.100 4.100 24 C -0.088 4.088 25 C -0.124 4.124 26 C -0.078 4.078 27 N -0.087 5.087 28 N -0.077 5.077 29 C 0.027 3.973 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.242 0.758 40 H 0.199 0.801 41 H 0.186 0.814 42 H 0.198 0.802 43 H 0.197 0.803 44 H 0.171 0.829 45 H 0.028 0.972 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.482 -10.826 -12.997 19.899 hybrid contribution 0.818 -1.662 -0.117 1.856 sum 11.299 -12.488 -13.114 21.345 Atomic orbital electron populations 1.70898 1.07542 1.30666 1.47453 1.26202 0.96037 1.02726 1.00327 0.83364 0.74800 0.74963 0.76422 1.21481 1.22034 1.21535 1.19770 1.08054 0.93807 1.26242 0.94529 1.44434 1.39795 1.05412 1.42335 1.20566 0.87423 1.00187 0.90944 1.20945 0.98588 0.96216 1.01062 1.20927 1.01626 0.95395 0.95791 1.21613 0.92679 1.01355 0.98610 1.22798 0.94866 0.98971 0.82402 0.89282 1.45956 1.19330 1.48825 1.18808 1.17685 0.81769 0.80197 0.84688 1.90707 1.58036 1.39378 1.56528 1.22487 0.96236 1.00720 0.97036 1.22796 0.93520 0.94657 0.94811 1.19110 0.97963 0.98227 0.93929 1.21433 0.93081 0.99924 0.97360 1.21706 1.01030 0.94438 0.92872 1.21659 0.91656 0.93904 1.01618 1.21096 0.98570 1.00752 0.91951 1.20981 0.92421 0.96444 0.97948 1.73769 1.13816 1.16942 1.04131 1.73159 1.28116 1.06923 0.99485 1.20627 0.94419 0.85932 0.96331 0.91627 0.93982 0.92093 0.92321 0.93897 0.90936 0.89287 0.90847 0.93636 0.75843 0.80149 0.81413 0.80206 0.80335 0.82902 0.97167 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.40 11.99 21.65 0.26 -54.14 16 2 C -0.05 -3.07 4.53 84.86 0.38 -2.69 16 3 Si 1.08 53.08 30.06 68.60 2.06 55.15 16 4 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.35 -19.85 9.46 84.04 0.80 -19.05 16 8 H 0.04 2.23 8.05 -2.91 -0.02 2.21 16 9 N -0.60 -29.50 2.62 -708.82 -1.86 -31.36 16 10 C 0.13 5.99 5.22 83.58 0.44 6.43 16 11 C -0.13 -5.01 4.96 28.36 0.14 -4.87 16 12 C -0.10 -3.13 5.76 29.51 0.17 -2.96 16 13 C -0.10 -3.58 5.23 30.30 0.16 -3.42 16 14 C 0.12 4.42 2.91 46.10 0.13 4.55 16 15 H 0.09 3.18 7.57 -2.39 -0.02 3.16 16 16 N -0.68 -27.36 5.07 -440.10 -2.23 -29.60 16 17 C 0.57 22.69 7.62 86.81 0.66 23.35 16 18 O -0.57 -23.56 16.02 -3.85 -0.06 -23.63 16 19 C -0.03 -1.11 6.82 41.61 0.28 -0.83 16 20 C -0.03 -0.79 9.51 23.02 0.22 -0.57 16 21 C -0.08 -1.98 5.75 -21.28 -0.12 -2.10 16 22 C -0.10 -1.34 9.81 22.30 0.22 -1.13 16 23 C -0.08 -0.65 9.96 22.07 0.22 -0.43 16 24 C -0.07 -0.65 9.94 22.06 0.22 -0.43 16 25 C -0.10 -1.84 10.00 22.31 0.22 -1.62 16 26 C 0.05 1.35 6.69 40.27 0.27 1.62 16 27 N -0.23 -8.11 11.55 -51.92 -0.60 -8.71 16 28 N -0.22 -8.49 10.70 -48.75 -0.52 -9.01 16 29 C 0.16 6.80 4.75 87.42 0.41 7.22 16 30 H 0.27 15.63 4.95 -92.71 -0.46 15.18 16 31 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 32 H 0.06 3.20 5.61 -2.38 -0.01 3.18 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.94 4.65 -2.39 -0.01 1.93 16 35 H 0.07 2.20 6.28 -2.39 -0.02 2.18 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.85 6.58 -2.39 -0.02 1.83 16 39 H 0.41 17.17 7.77 -92.70 -0.72 16.45 16 40 H 0.18 4.27 7.69 -2.91 -0.02 4.24 16 41 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 43 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.01 0.49 7.81 -2.39 -0.02 0.47 16 46 H 0.06 2.27 6.89 -2.39 -0.02 2.26 16 Total: -1.00 -75.73 366.85 2.49 -73.24 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.62 Total: 24.98 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 4.83 Total: 3.08 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -4.95 Total: -132.82 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.06 Total: 55.15 kcal Total: -75.73 2.49 -73.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.663 kcal (2) G-P(sol) polarization free energy of solvation -75.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds