Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00446 * 2 1 4 4 H 1.48502 * 109.47390 * 85.00778 * 3 2 1 5 5 H 1.48503 * 109.47056 * 325.01133 * 3 2 1 6 6 H 1.48502 * 109.47315 * 205.01038 * 3 2 1 7 7 C 1.38815 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99777 * 154.33989 * 7 2 1 9 9 N 1.36935 * 120.00201 * 334.32978 * 7 2 1 10 10 C 1.50175 * 120.53508 * 336.40963 * 9 7 2 11 11 C 1.46240 * 107.53368 * 109.55968 * 10 9 7 12 12 C 1.52527 * 114.27541 * 58.41011 * 11 10 9 13 13 C 1.50129 * 105.41409 * 270.59142 * 12 11 10 14 14 C 1.54841 * 110.81627 * 97.68200 * 13 12 11 15 15 H 1.09001 * 109.35852 * 81.33732 * 14 13 12 16 16 N 1.46499 * 109.36029 * 200.92670 * 14 13 12 17 17 C 1.34778 * 120.00284 * 205.00019 * 16 14 13 18 18 O 1.21551 * 119.99488 * 359.97438 * 17 16 14 19 19 C 1.47860 * 120.00166 * 180.02562 * 17 16 14 20 20 C 1.38953 * 121.42459 * 354.25036 * 19 17 16 21 21 N 1.32583 * 120.33924 * 179.80044 * 20 19 17 22 22 N 1.28380 * 123.43394 * 0.48147 * 21 20 19 23 23 C 1.33466 * 121.85192 * 359.76295 * 22 21 20 24 24 C 1.40586 * 121.74074 * 179.97438 * 23 22 21 25 25 C 1.36114 * 119.61151 * 180.02562 * 24 23 22 26 26 C 1.39368 * 121.13259 * 0.04151 * 25 24 23 27 27 C 1.36346 * 120.88185 * 359.95653 * 26 25 24 28 28 C 1.39847 * 119.50254 * 0.02562 * 27 26 25 29 29 C 1.43431 * 120.53883 * 156.12511 * 9 7 2 30 30 H 0.97006 * 119.99326 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.84779 * 229.07005 * 10 9 7 32 32 H 1.09004 * 109.84731 * 349.98422 * 10 9 7 33 33 H 1.08995 * 108.51987 * 179.65073 * 11 10 9 34 34 H 1.08998 * 108.52226 * 297.32700 * 11 10 9 35 35 H 1.09000 * 110.25140 * 29.56251 * 12 11 10 36 36 H 1.08994 * 110.25146 * 151.47806 * 12 11 10 37 37 H 1.08995 * 109.20979 * 218.02447 * 13 12 11 38 38 H 1.09002 * 109.20466 * 337.34225 * 13 12 11 39 39 H 0.96996 * 119.99879 * 25.00598 * 16 14 13 40 40 H 1.08003 * 119.82895 * 0.02562 * 20 19 17 41 41 H 1.08008 * 120.19122 * 0.07003 * 24 23 22 42 42 H 1.08002 * 119.42897 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.56123 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.24723 * 180.02562 * 27 26 25 45 45 H 1.08993 * 108.15733 * 33.30761 * 29 9 7 46 46 H 1.09004 * 108.15875 * 149.87966 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1073 1.3948 5 1 1.5045 2.6199 -0.8028 6 1 3.5966 1.4118 -0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0103 -1.2482 -0.4056 9 7 1.4268 -2.3298 0.5127 10 6 0.3201 -2.2243 1.5223 11 6 -0.9172 -2.6435 0.8650 12 6 -0.8795 -4.0607 0.3025 13 6 -0.3604 -3.9199 -1.0992 14 6 1.1585 -4.2151 -1.1558 15 1 1.3161 -5.2932 -1.1881 16 7 1.7268 -3.6076 -2.3617 17 6 2.8539 -4.1108 -2.9028 18 8 3.3992 -5.0684 -2.3899 19 6 3.4277 -3.4972 -4.1196 20 6 2.7690 -2.4784 -4.7968 21 7 3.3052 -1.9408 -5.8837 22 7 4.4291 -2.3161 -6.3777 23 6 5.1539 -3.2884 -5.8203 24 6 6.3842 -3.6979 -6.3635 25 6 7.0875 -4.6947 -5.7598 26 6 6.6090 -5.3198 -4.6097 27 6 5.4200 -4.9490 -4.0549 28 6 4.6714 -3.9280 -4.6490 29 6 1.8587 -3.6306 0.0902 30 1 -0.4849 0.8401 0.0004 31 1 0.5286 -2.8774 2.3696 32 1 0.2279 -1.1933 1.8640 33 1 -1.7316 -2.5789 1.5866 34 1 -1.1255 -1.9540 0.0469 35 1 -0.2072 -4.6832 0.8929 36 1 -1.8811 -4.4903 0.2947 37 1 -0.8862 -4.6201 -1.7483 38 1 -0.5414 -2.9032 -1.4481 39 1 1.2918 -2.8431 -2.7706 40 1 1.8169 -2.1200 -4.4339 41 1 6.7694 -3.2239 -7.2543 42 1 8.0326 -5.0067 -6.1794 43 1 7.1877 -6.1082 -4.1518 44 1 5.0590 -5.4401 -3.1632 45 1 2.9275 -3.5826 -0.1181 46 1 1.7103 -4.3235 0.9184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034413192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = 78.576038 kcal Electronic energy + Delta-G solvation = -30163.870547 eV Core-core repulsion = 26248.084178 eV Total energy + Delta-G solvation = -3915.786370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.51811 -39.49144 -37.94916 -37.76647 -34.46881 -33.74942 -33.22090 -31.69737 -31.18546 -30.69342 -29.70283 -26.45450 -25.81118 -24.41740 -24.17989 -23.23457 -22.58560 -20.88484 -19.82789 -19.32594 -18.66906 -18.17947 -17.52217 -16.71778 -15.76405 -15.62737 -15.47759 -15.23777 -15.02795 -14.81308 -14.62636 -14.10965 -13.87690 -13.72599 -13.47972 -13.28938 -12.59033 -12.47334 -12.45155 -12.32444 -11.99758 -11.88658 -11.68340 -11.43961 -11.01728 -10.86358 -10.81636 -10.72406 -10.54271 -10.32627 -10.17997 -10.07873 -9.82632 -9.54146 -9.48994 -9.32729 -9.29085 -8.83000 -8.51873 -8.38892 -6.82926 -5.93121 -3.26379 -0.35523 0.53612 1.50694 2.60111 3.10204 3.28887 3.32430 3.41571 3.43616 3.87843 3.90688 4.21666 4.36008 4.42885 4.50162 4.65060 4.83803 4.97037 5.11998 5.19213 5.24913 5.35244 5.39822 5.48271 5.54869 5.67777 5.81719 5.87749 6.00806 6.01976 6.07777 6.13430 6.18667 6.23909 6.34504 6.41367 6.50817 6.58895 6.74247 6.79741 6.86214 6.92137 7.04802 7.15078 7.44732 7.65488 7.77242 7.89157 8.30253 8.37671 8.52228 9.07050 9.75502 10.29245 11.13110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.003891 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.076537 B = 7194.141843 C = 8317.742686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.010 3.990 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.063 0.937 9 N -0.580 5.580 10 C 0.166 3.834 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.112 4.112 14 C 0.115 3.885 15 H 0.076 0.924 16 N -0.682 5.682 17 C 0.559 3.441 18 O -0.540 6.540 19 C -0.098 4.098 20 C 0.049 3.951 21 N -0.221 5.221 22 N -0.194 5.194 23 C 0.058 3.942 24 C -0.084 4.084 25 C -0.098 4.098 26 C -0.101 4.101 27 C -0.101 4.101 28 C -0.027 4.027 29 C 0.150 3.850 30 H 0.254 0.746 31 H 0.009 0.991 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.403 0.597 40 H 0.178 0.822 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.174 0.826 45 H 0.038 0.962 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 -10.377 -7.584 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.189 4.189 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.081 0.919 9 N -0.300 5.300 10 C 0.042 3.958 11 C -0.174 4.174 12 C -0.149 4.149 13 C -0.150 4.150 14 C 0.008 3.992 15 H 0.094 0.906 16 N -0.331 5.331 17 C 0.344 3.656 18 O -0.420 6.420 19 C -0.114 4.114 20 C -0.104 4.104 21 N -0.074 5.074 22 N -0.050 5.050 23 C -0.071 4.071 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.036 4.036 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.239 0.761 40 H 0.195 0.805 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.191 0.809 45 H 0.056 0.944 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.729 -9.788 -8.302 14.055 hybrid contribution 0.228 0.436 0.828 0.963 sum 5.957 -9.352 -7.473 13.371 Atomic orbital electron populations 1.70007 1.05110 1.25510 1.52632 1.24802 0.94989 0.98143 1.00960 0.86485 0.79622 0.84334 0.77676 1.21523 1.21849 1.20605 1.19100 0.96111 0.86380 1.36302 0.91877 1.44286 1.41438 1.00344 1.43947 1.20114 0.86525 1.00219 0.88910 1.21042 0.98388 0.95368 1.02626 1.20948 0.99137 0.98768 0.96003 1.21695 0.93213 1.02500 0.97559 1.22891 0.93777 0.96658 0.85847 0.90553 1.45980 1.25148 1.33414 1.28518 1.17654 0.81452 0.83555 0.82903 1.90570 1.60098 1.28100 1.63217 1.21279 0.95412 0.97528 0.97162 1.24361 1.01045 0.92514 0.92453 1.73016 1.04347 1.20763 1.09225 1.73590 0.99791 1.08276 1.23296 1.20377 0.97237 0.95618 0.93884 1.20745 0.92085 0.97232 1.00422 1.21080 0.99934 0.95374 0.95442 1.21256 0.95946 0.99463 0.95427 1.21986 0.93689 0.94989 1.01222 1.18703 0.93840 0.96493 0.94601 1.20726 0.96703 0.88110 0.92510 0.93629 0.97282 0.90123 0.95548 0.87758 0.92385 0.93081 0.94069 0.89881 0.76147 0.80543 0.83938 0.84755 0.84831 0.80914 0.94363 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.56 9.82 55.49 0.54 -22.02 16 2 C 0.01 0.26 4.73 -17.43 -0.08 0.18 16 3 Si 0.89 20.74 29.62 -169.99 -5.04 15.70 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.20 9.57 -15.06 -0.14 -6.34 16 8 H 0.06 1.65 7.94 -52.49 -0.42 1.23 16 9 N -0.58 -12.93 2.61 -175.40 -0.46 -13.39 16 10 C 0.17 3.55 5.25 -5.20 -0.03 3.52 16 11 C -0.14 -2.62 5.06 -30.19 -0.15 -2.77 16 12 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16 13 C -0.11 -1.83 5.23 -27.19 -0.14 -1.98 16 14 C 0.12 1.98 2.91 -66.22 -0.19 1.78 16 15 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 16 N -0.68 -11.29 5.04 -53.09 -0.27 -11.56 16 17 C 0.56 9.41 7.58 -12.32 -0.09 9.32 16 18 O -0.54 -9.86 13.32 5.32 0.07 -9.79 16 19 C -0.10 -1.55 5.95 -104.31 -0.62 -2.17 16 20 C 0.05 0.74 10.80 -16.96 -0.18 0.56 16 21 N -0.22 -3.63 11.47 30.73 0.35 -3.28 16 22 N -0.19 -3.11 11.52 32.21 0.37 -2.74 16 23 C 0.06 0.84 6.69 -84.87 -0.57 0.28 16 24 C -0.08 -0.92 10.01 -39.46 -0.39 -1.32 16 25 C -0.10 -0.89 9.94 -39.92 -0.40 -1.29 16 26 C -0.10 -1.03 9.96 -39.84 -0.40 -1.43 16 27 C -0.10 -1.36 9.28 -39.66 -0.37 -1.73 16 28 C -0.03 -0.41 5.77 -106.50 -0.61 -1.03 16 29 C 0.15 2.96 4.75 -4.93 -0.02 2.93 16 30 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 32 H 0.08 1.95 6.29 -51.93 -0.33 1.62 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.32 5.16 -51.93 -0.27 2.05 16 35 H 0.06 0.94 6.28 -51.93 -0.33 0.61 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.57 6.58 -51.93 -0.34 1.23 16 39 H 0.40 6.42 6.63 -40.82 -0.27 6.15 16 40 H 0.18 2.30 6.56 -52.48 -0.34 1.96 16 41 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.17 2.54 5.14 -52.48 -0.27 2.27 16 45 H 0.04 0.82 7.80 -51.93 -0.41 0.42 16 46 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -27.98 361.83 -9.35 -37.33 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.81 Total: 7.75 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.56 Total: -3.46 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.54 Total: -52.98 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.07 Total: -9.79 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.04 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.98 -9.35 -37.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034413192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.903 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds