Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00446 * 2 1 4 4 H 1.48502 * 109.47390 * 85.00778 * 3 2 1 5 5 H 1.48503 * 109.47056 * 325.01133 * 3 2 1 6 6 H 1.48502 * 109.47315 * 205.01038 * 3 2 1 7 7 C 1.38815 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99777 * 154.33989 * 7 2 1 9 9 N 1.36935 * 120.00201 * 334.32978 * 7 2 1 10 10 C 1.50175 * 120.53508 * 336.40963 * 9 7 2 11 11 C 1.46240 * 107.53368 * 109.55968 * 10 9 7 12 12 C 1.52527 * 114.27541 * 58.41011 * 11 10 9 13 13 C 1.50129 * 105.41409 * 270.59142 * 12 11 10 14 14 C 1.54841 * 110.81627 * 97.68200 * 13 12 11 15 15 H 1.09001 * 109.35852 * 81.33732 * 14 13 12 16 16 N 1.46499 * 109.36029 * 200.92670 * 14 13 12 17 17 C 1.34778 * 120.00284 * 205.00019 * 16 14 13 18 18 O 1.21551 * 119.99488 * 359.97438 * 17 16 14 19 19 C 1.47860 * 120.00166 * 180.02562 * 17 16 14 20 20 C 1.38953 * 121.42459 * 354.25036 * 19 17 16 21 21 N 1.32583 * 120.33924 * 179.80044 * 20 19 17 22 22 N 1.28380 * 123.43394 * 0.48147 * 21 20 19 23 23 C 1.33466 * 121.85192 * 359.76295 * 22 21 20 24 24 C 1.40586 * 121.74074 * 179.97438 * 23 22 21 25 25 C 1.36114 * 119.61151 * 180.02562 * 24 23 22 26 26 C 1.39368 * 121.13259 * 0.04151 * 25 24 23 27 27 C 1.36346 * 120.88185 * 359.95653 * 26 25 24 28 28 C 1.39847 * 119.50254 * 0.02562 * 27 26 25 29 29 C 1.43431 * 120.53883 * 156.12511 * 9 7 2 30 30 H 0.97006 * 119.99326 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.84779 * 229.07005 * 10 9 7 32 32 H 1.09004 * 109.84731 * 349.98422 * 10 9 7 33 33 H 1.08995 * 108.51987 * 179.65073 * 11 10 9 34 34 H 1.08998 * 108.52226 * 297.32700 * 11 10 9 35 35 H 1.09000 * 110.25140 * 29.56251 * 12 11 10 36 36 H 1.08994 * 110.25146 * 151.47806 * 12 11 10 37 37 H 1.08995 * 109.20979 * 218.02447 * 13 12 11 38 38 H 1.09002 * 109.20466 * 337.34225 * 13 12 11 39 39 H 0.96996 * 119.99879 * 25.00598 * 16 14 13 40 40 H 1.08003 * 119.82895 * 0.02562 * 20 19 17 41 41 H 1.08008 * 120.19122 * 0.07003 * 24 23 22 42 42 H 1.08002 * 119.42897 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.56123 * 179.97438 * 26 25 24 44 44 H 1.08005 * 120.24723 * 180.02562 * 27 26 25 45 45 H 1.08993 * 108.15733 * 33.30761 * 29 9 7 46 46 H 1.09004 * 108.15875 * 149.87966 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1073 1.3948 5 1 1.5045 2.6199 -0.8028 6 1 3.5966 1.4118 -0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0103 -1.2482 -0.4056 9 7 1.4268 -2.3298 0.5127 10 6 0.3201 -2.2243 1.5223 11 6 -0.9172 -2.6435 0.8650 12 6 -0.8795 -4.0607 0.3025 13 6 -0.3604 -3.9199 -1.0992 14 6 1.1585 -4.2151 -1.1558 15 1 1.3161 -5.2932 -1.1881 16 7 1.7268 -3.6076 -2.3617 17 6 2.8539 -4.1108 -2.9028 18 8 3.3992 -5.0684 -2.3899 19 6 3.4277 -3.4972 -4.1196 20 6 2.7690 -2.4784 -4.7968 21 7 3.3052 -1.9408 -5.8837 22 7 4.4291 -2.3161 -6.3777 23 6 5.1539 -3.2884 -5.8203 24 6 6.3842 -3.6979 -6.3635 25 6 7.0875 -4.6947 -5.7598 26 6 6.6090 -5.3198 -4.6097 27 6 5.4200 -4.9490 -4.0549 28 6 4.6714 -3.9280 -4.6490 29 6 1.8587 -3.6306 0.0902 30 1 -0.4849 0.8401 0.0004 31 1 0.5286 -2.8774 2.3696 32 1 0.2279 -1.1933 1.8640 33 1 -1.7316 -2.5789 1.5866 34 1 -1.1255 -1.9540 0.0469 35 1 -0.2072 -4.6832 0.8929 36 1 -1.8811 -4.4903 0.2947 37 1 -0.8862 -4.6201 -1.7483 38 1 -0.5414 -2.9032 -1.4481 39 1 1.2918 -2.8431 -2.7706 40 1 1.8169 -2.1200 -4.4339 41 1 6.7694 -3.2239 -7.2543 42 1 8.0326 -5.0067 -6.1794 43 1 7.1877 -6.1082 -4.1518 44 1 5.0590 -5.4401 -3.1632 45 1 2.9275 -3.5826 -0.1181 46 1 1.7103 -4.3235 0.9184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034413192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = 62.651079 kcal Electronic energy + Delta-G solvation = -30164.561105 eV Core-core repulsion = 26248.084178 eV Total energy + Delta-G solvation = -3916.476928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.63001 -40.84446 -39.31579 -38.89488 -35.97463 -35.00087 -34.70463 -32.91470 -32.72628 -31.97312 -30.96654 -28.05283 -27.14963 -25.57069 -25.46948 -24.81442 -23.77075 -22.22322 -21.31161 -20.80112 -19.68918 -19.31332 -18.69939 -18.54701 -17.13870 -16.88795 -16.73961 -16.53824 -16.26944 -16.12831 -15.94542 -15.62062 -15.41252 -14.98693 -14.84069 -14.53033 -14.04438 -13.80949 -13.54174 -13.45051 -13.42734 -13.32967 -13.22279 -12.87720 -12.69949 -12.39716 -12.34985 -12.03864 -11.93767 -11.88347 -11.78836 -11.50154 -11.30767 -11.09867 -10.92181 -10.55896 -10.48608 -10.46380 -10.09853 -9.46563 -8.63789 -7.85607 -5.19921 -1.44881 -0.50174 0.50699 1.41326 1.48463 1.48758 1.52143 1.90752 2.05879 2.51721 2.81378 2.83463 3.11536 3.25794 3.28982 3.35482 3.59518 3.68637 3.90031 3.94684 4.10669 4.17554 4.19620 4.36352 4.42160 4.47983 4.54123 4.60244 4.67602 4.73916 4.83833 4.90759 4.95463 5.04866 5.09828 5.22591 5.25366 5.28763 5.31015 5.37679 5.45744 5.60087 5.64776 5.70383 5.73318 5.77952 6.22484 6.38170 6.46207 7.04547 7.18113 7.36382 7.90919 8.41658 9.17265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.003891 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.076537 B = 7194.141843 C = 8317.742686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.020 4.020 3 Si 0.931 3.069 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.249 4.249 8 H 0.044 0.956 9 N -0.590 5.590 10 C 0.168 3.832 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.102 4.102 14 C 0.124 3.876 15 H 0.086 0.914 16 N -0.684 5.684 17 C 0.563 3.437 18 O -0.556 6.556 19 C -0.119 4.119 20 C 0.049 3.951 21 N -0.249 5.249 22 N -0.206 5.206 23 C 0.041 3.959 24 C -0.087 4.087 25 C -0.081 4.081 26 C -0.073 4.073 27 C -0.135 4.135 28 C -0.039 4.039 29 C 0.153 3.847 30 H 0.249 0.751 31 H 0.025 0.975 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.404 0.596 40 H 0.189 0.811 41 H 0.167 0.833 42 H 0.184 0.816 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.013 0.987 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -12.498 -8.512 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.218 4.218 3 Si 0.762 3.238 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.379 4.379 8 H 0.062 0.938 9 N -0.311 5.311 10 C 0.045 3.955 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.141 4.141 14 C 0.017 3.983 15 H 0.104 0.896 16 N -0.332 5.332 17 C 0.349 3.651 18 O -0.437 6.437 19 C -0.134 4.134 20 C -0.104 4.104 21 N -0.100 5.100 22 N -0.060 5.060 23 C -0.089 4.089 24 C -0.108 4.108 25 C -0.101 4.101 26 C -0.093 4.093 27 C -0.154 4.154 28 C -0.048 4.048 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.240 0.760 40 H 0.205 0.795 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.187 0.813 44 H 0.174 0.826 45 H 0.032 0.968 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.254 -11.912 -9.241 16.731 hybrid contribution -0.018 0.967 1.079 1.449 sum 7.236 -10.946 -8.162 15.453 Atomic orbital electron populations 1.70107 1.05367 1.25216 1.53479 1.25141 0.95518 0.99477 1.01682 0.85834 0.78451 0.82484 0.77030 1.21920 1.22198 1.21269 1.18984 0.95351 0.87609 1.35994 0.93820 1.44301 1.41829 1.00534 1.44444 1.20072 0.87342 0.98762 0.89350 1.20872 0.97426 0.96734 1.01662 1.20916 1.00857 0.96800 0.95435 1.21590 0.92619 1.01580 0.98264 1.22702 0.94094 0.96821 0.84719 0.89582 1.45962 1.25269 1.33541 1.28421 1.17811 0.81096 0.83207 0.83023 1.90558 1.60481 1.28806 1.63830 1.21226 0.96479 0.98481 0.97258 1.24488 1.01398 0.92327 0.92201 1.72953 1.05152 1.21871 1.10072 1.73467 0.99883 1.08890 1.23751 1.20808 0.98527 0.95534 0.94032 1.21178 0.90675 0.97690 1.01215 1.21608 1.00957 0.93450 0.94079 1.21761 0.94124 0.98674 0.94712 1.21921 0.95630 0.95952 1.01860 1.18966 0.93787 0.97030 0.95012 1.20708 0.95427 0.87346 0.94203 0.94186 0.95740 0.93313 0.94548 0.90642 0.91679 0.90460 0.91514 0.92495 0.75970 0.79455 0.81510 0.79919 0.81277 0.82560 0.96833 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.66 9.82 21.65 0.21 -46.45 16 2 C -0.02 -1.04 4.73 84.86 0.40 -0.64 16 3 Si 0.93 43.69 29.62 68.60 2.03 45.72 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.25 -12.73 9.57 84.03 0.80 -11.93 16 8 H 0.04 2.38 7.94 -2.91 -0.02 2.36 16 9 N -0.59 -26.68 2.61 -708.84 -1.85 -28.53 16 10 C 0.17 7.21 5.25 83.58 0.44 7.65 16 11 C -0.13 -4.88 5.06 28.36 0.14 -4.73 16 12 C -0.10 -3.13 5.76 29.51 0.17 -2.96 16 13 C -0.10 -3.24 5.23 30.30 0.16 -3.08 16 14 C 0.12 4.18 2.91 46.10 0.13 4.31 16 15 H 0.09 2.78 7.57 -2.39 -0.02 2.76 16 16 N -0.68 -23.09 5.04 -440.15 -2.22 -25.31 16 17 C 0.56 19.45 7.58 86.79 0.66 20.11 16 18 O -0.56 -20.66 13.32 -3.88 -0.05 -20.72 16 19 C -0.12 -3.90 5.95 -19.66 -0.12 -4.02 16 20 C 0.05 1.54 10.80 84.75 0.92 2.45 16 21 N -0.25 -8.41 11.47 -56.68 -0.65 -9.06 16 22 N -0.21 -6.62 11.52 -51.99 -0.60 -7.22 16 23 C 0.04 1.17 6.69 40.38 0.27 1.44 16 24 C -0.09 -1.65 10.01 22.35 0.22 -1.43 16 25 C -0.08 -1.09 9.94 22.05 0.22 -0.87 16 26 C -0.07 -1.23 9.96 22.10 0.22 -1.01 16 27 C -0.14 -3.53 9.28 22.22 0.21 -3.33 16 28 C -0.04 -1.17 5.77 -21.08 -0.12 -1.30 16 29 C 0.15 6.03 4.75 87.43 0.41 6.44 16 30 H 0.25 12.86 8.31 -92.70 -0.77 12.09 16 31 H 0.02 0.96 8.13 -2.39 -0.02 0.95 16 32 H 0.05 2.40 6.29 -2.38 -0.02 2.38 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 3.38 5.16 -2.39 -0.01 3.36 16 35 H 0.06 1.92 6.28 -2.39 -0.01 1.91 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.15 6.58 -2.39 -0.02 2.13 16 39 H 0.40 13.37 6.63 -92.71 -0.61 12.75 16 40 H 0.19 5.20 6.56 -2.91 -0.02 5.18 16 41 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.16 4.63 5.14 -2.91 -0.01 4.61 16 45 H 0.01 0.59 7.80 -2.39 -0.02 0.57 16 46 H 0.05 1.93 6.89 -2.39 -0.02 1.91 16 Total: -1.00 -63.37 361.83 2.44 -60.94 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.42 Total: 23.50 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.14 Total: 7.12 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.10 Total: -116.56 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.37 2.44 -60.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034413192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.587 kcal (2) G-P(sol) polarization free energy of solvation -63.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds