Wall clock time and date at job start Sat Apr 11 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21590 * 119.99804 * 359.97438 * 17 16 14 19 19 C 1.47509 * 120.00368 * 180.02562 * 17 16 14 20 20 C 1.38677 * 120.33503 * 359.71342 * 19 17 16 21 21 C 1.38995 * 120.62793 * 179.74305 * 20 19 17 22 22 C 1.36224 * 121.14062 * 0.52313 * 21 20 19 23 23 C 1.40686 * 120.17122 * 359.76492 * 22 21 20 24 24 N 1.33759 * 120.97501 * 179.97438 * 23 22 21 25 25 C 1.31334 * 119.73056 * 180.02562 * 24 23 22 26 26 C 1.39645 * 120.68114 * 359.97438 * 25 24 23 27 27 N 1.31444 * 120.64506 * 0.02562 * 26 25 24 28 28 C 1.33496 * 119.72446 * 359.97438 * 27 26 25 29 29 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 30 30 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 31 31 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 32 32 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 33 33 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 34 34 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 35 35 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 36 36 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 37 37 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 38 38 H 1.09006 * 109.48765 * 155.01816 * 13 12 11 39 39 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 40 40 H 1.08001 * 119.68718 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.42842 * 180.24370 * 21 20 19 42 42 H 1.07999 * 119.91120 * 179.74129 * 22 21 20 43 43 H 1.08001 * 119.65623 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.67770 * 179.97438 * 26 25 24 45 45 H 1.09007 * 108.94966 * 258.57380 * 29 9 7 46 46 H 1.09000 * 108.94673 * 17.19669 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7711 -6.7368 -0.1940 19 6 2.6718 -7.9471 -0.8026 20 6 4.0560 -8.0291 -0.7844 21 6 4.7094 -9.1055 -1.3732 22 6 4.0130 -10.1000 -1.9909 23 6 2.6076 -10.0548 -2.0386 24 7 1.9078 -11.0224 -2.6413 25 6 0.5965 -10.9553 -2.6718 26 6 -0.0761 -9.8839 -2.0806 27 7 0.5908 -8.9218 -1.4828 28 6 1.9243 -8.9688 -1.4394 29 6 1.7172 -3.6322 -0.0080 30 1 -0.4850 -0.8370 -0.0716 31 1 0.1564 -1.1629 1.7372 32 1 -0.0928 -2.9227 1.8305 33 1 2.4164 -1.5369 2.8962 34 1 0.9884 -1.8612 3.9052 35 1 2.5967 -3.5918 4.1904 36 1 1.1571 -4.2164 3.3746 37 1 3.5115 -3.3254 1.7253 38 1 3.5469 -4.9076 2.5408 39 1 3.6709 -5.8914 0.4519 40 1 4.6318 -7.2512 -0.3050 41 1 5.7880 -9.1518 -1.3443 42 1 4.5411 -10.9251 -2.4456 43 1 0.0327 -11.7374 -3.1585 44 1 -1.1549 -9.8448 -2.1156 45 1 0.8398 -3.9360 -0.5791 46 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034460467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:34 Heat of formation + Delta-G solvation = 65.053666 kcal Electronic energy + Delta-G solvation = -29377.522931 eV Core-core repulsion = 25461.150188 eV Total energy + Delta-G solvation = -3916.372744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.72678 -39.70989 -37.96473 -37.32741 -34.99572 -34.64730 -33.47323 -31.60424 -31.13063 -30.71811 -29.53843 -25.99634 -25.70963 -24.59931 -24.37726 -23.89544 -22.54269 -20.61417 -20.03801 -19.37820 -18.91304 -18.48578 -17.24603 -17.13646 -16.56689 -15.81668 -15.50367 -15.34992 -15.03532 -14.79422 -14.39179 -14.29770 -14.04627 -13.71667 -13.65078 -13.39597 -12.95480 -12.54984 -12.49523 -12.27636 -12.20535 -12.13423 -11.87749 -11.78709 -11.69572 -11.12763 -10.73833 -10.62368 -10.40353 -10.15260 -10.01635 -9.97004 -9.90653 -9.79581 -9.33698 -9.30422 -9.11901 -8.96642 -8.77393 -8.24140 -6.74148 -6.01344 -3.28809 -0.29958 0.23329 1.42586 2.32664 3.14648 3.21455 3.50277 3.53654 3.69041 3.71739 3.83469 3.86606 4.01632 4.33945 4.44884 4.61403 4.64285 4.74308 4.88544 5.00302 5.14357 5.30496 5.34246 5.39018 5.43682 5.54256 5.55655 5.60874 5.78105 5.81905 5.88624 5.90982 6.07583 6.23970 6.32051 6.39054 6.48465 6.58970 6.71298 6.73642 6.81191 6.87425 6.96217 7.00373 7.19622 7.42342 7.49951 7.69613 8.12490 8.42184 8.63445 9.21767 9.89120 10.29798 11.17465 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002661 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.470840 B =10519.203574 C =10693.594667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.019 4.019 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.358 4.358 8 H 0.049 0.951 9 N -0.586 5.586 10 C 0.142 3.858 11 C -0.142 4.142 12 C -0.098 4.098 13 C -0.113 4.113 14 C 0.134 3.866 15 H 0.080 0.920 16 N -0.719 5.719 17 C 0.547 3.453 18 O -0.494 6.494 19 C -0.090 4.090 20 C -0.064 4.064 21 C -0.106 4.106 22 C -0.063 4.063 23 C 0.070 3.930 24 N -0.428 5.428 25 C 0.076 3.924 26 C 0.075 3.925 27 N -0.385 5.385 28 C 0.111 3.889 29 C 0.143 3.857 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.393 0.607 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.019 0.981 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -21.790 -0.644 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.222 4.222 3 Si 0.889 3.111 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.487 4.487 8 H 0.067 0.933 9 N -0.309 5.309 10 C 0.015 3.985 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.151 4.151 14 C 0.029 3.971 15 H 0.098 0.902 16 N -0.372 5.372 17 C 0.332 3.668 18 O -0.368 6.368 19 C -0.095 4.095 20 C -0.085 4.085 21 C -0.126 4.126 22 C -0.082 4.082 23 C -0.054 4.054 24 N -0.142 5.142 25 C -0.100 4.100 26 C -0.100 4.100 27 N -0.098 5.098 28 C -0.014 4.014 29 C 0.016 3.984 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.227 0.773 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.193 0.807 44 H 0.193 0.807 45 H 0.037 0.963 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.533 -19.979 -0.539 21.359 hybrid contribution 0.686 -1.846 -0.202 1.980 sum 8.219 -21.825 -0.741 23.333 Atomic orbital electron populations 1.70764 1.06941 1.30293 1.45775 1.25826 0.96233 1.01618 0.98545 0.83614 0.75026 0.76260 0.76215 1.21163 1.22030 1.21988 1.19850 1.00328 0.89916 1.38605 0.93312 1.43564 1.59947 1.01132 1.26234 1.20940 0.91820 1.01225 0.84523 1.21371 1.01565 0.95748 0.99545 1.20261 0.98515 0.98125 0.96738 1.21253 0.98233 1.00078 0.95562 1.21533 0.95890 0.85461 0.94213 0.90155 1.46141 1.09821 1.23346 1.57919 1.17887 0.87466 0.81993 0.79452 1.90873 1.12691 1.76743 1.56495 1.20053 0.93150 0.95537 1.00718 1.21596 0.92884 0.97840 0.96179 1.20938 1.01072 0.93356 0.97200 1.20970 0.90919 0.99089 0.97261 1.19537 0.95399 0.92358 0.98092 1.68697 1.08161 1.24203 1.13121 1.24120 0.91053 0.98443 0.96344 1.24316 1.02497 0.90092 0.93104 1.69059 1.06156 1.23504 1.11056 1.19330 0.90834 0.94096 0.97177 1.21583 0.98520 0.85516 0.92782 0.91913 0.90307 0.95763 0.91754 0.93511 0.93621 0.93368 0.90086 0.92889 0.77253 0.84118 0.83901 0.83915 0.80711 0.80655 0.96325 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 12.18 55.49 0.68 -26.26 16 2 C -0.02 -0.52 4.68 -17.43 -0.08 -0.60 16 3 Si 1.06 25.07 30.01 -169.99 -5.10 19.97 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.36 -9.85 9.17 -15.06 -0.14 -9.99 16 8 H 0.05 1.36 7.97 -52.49 -0.42 0.94 16 9 N -0.59 -14.56 2.01 -171.87 -0.35 -14.91 16 10 C 0.14 3.34 4.89 -4.08 -0.02 3.33 16 11 C -0.14 -2.80 5.74 -28.58 -0.16 -2.97 16 12 C -0.10 -1.64 5.16 -29.79 -0.15 -1.80 16 13 C -0.11 -1.82 5.07 -28.02 -0.14 -1.96 16 14 C 0.13 2.39 2.27 -68.32 -0.15 2.23 16 15 H 0.08 1.60 6.74 -51.93 -0.35 1.25 16 16 N -0.72 -10.57 4.93 -55.24 -0.27 -10.84 16 17 C 0.55 9.04 7.72 -12.48 -0.10 8.95 16 18 O -0.49 -10.26 14.85 5.29 0.08 -10.19 16 19 C -0.09 -1.21 5.90 -104.63 -0.62 -1.83 16 20 C -0.06 -0.59 9.52 -39.14 -0.37 -0.96 16 21 C -0.11 -0.77 9.93 -40.03 -0.40 -1.17 16 22 C -0.06 -0.55 9.97 -39.38 -0.39 -0.95 16 23 C 0.07 0.84 6.59 -84.82 -0.56 0.28 16 24 N -0.43 -4.76 10.46 -10.82 -0.11 -4.87 16 25 C 0.08 0.67 11.21 -17.24 -0.19 0.48 16 26 C 0.08 0.79 11.22 -17.19 -0.19 0.60 16 27 N -0.38 -5.83 8.56 -10.59 -0.09 -5.92 16 28 C 0.11 1.58 6.60 -84.53 -0.56 1.02 16 29 C 0.14 3.16 5.86 -2.76 -0.02 3.14 16 30 H 0.27 8.28 7.39 -40.82 -0.30 7.98 16 31 H 0.08 2.11 5.28 -51.93 -0.27 1.83 16 32 H 0.02 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 37 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 38 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 39 H 0.39 4.34 6.57 -40.82 -0.27 4.08 16 40 H 0.14 0.90 6.37 -52.49 -0.33 0.56 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.05 1.10 7.86 -51.93 -0.41 0.69 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -35.95 369.63 -9.98 -45.94 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.13 Total: 3.70 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -4.25 Total: -2.20 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.15 Total: -62.79 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.95 -9.98 -45.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034460467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.989 kcal (2) G-P(sol) polarization free energy of solvation -35.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds