Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21590 * 119.99804 * 359.97438 * 17 16 14 19 19 C 1.47509 * 120.00368 * 180.02562 * 17 16 14 20 20 C 1.38677 * 120.33503 * 359.71342 * 19 17 16 21 21 C 1.38995 * 120.62793 * 179.74305 * 20 19 17 22 22 C 1.36224 * 121.14062 * 0.52313 * 21 20 19 23 23 C 1.40686 * 120.17122 * 359.76492 * 22 21 20 24 24 N 1.33759 * 120.97501 * 179.97438 * 23 22 21 25 25 C 1.31334 * 119.73056 * 180.02562 * 24 23 22 26 26 C 1.39645 * 120.68114 * 359.97438 * 25 24 23 27 27 N 1.31444 * 120.64506 * 0.02562 * 26 25 24 28 28 C 1.33496 * 119.72446 * 359.97438 * 27 26 25 29 29 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 30 30 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 31 31 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 32 32 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 33 33 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 34 34 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 35 35 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 36 36 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 37 37 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 38 38 H 1.09006 * 109.48765 * 155.01816 * 13 12 11 39 39 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 40 40 H 1.08001 * 119.68718 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.42842 * 180.24370 * 21 20 19 42 42 H 1.07999 * 119.91120 * 179.74129 * 22 21 20 43 43 H 1.08001 * 119.65623 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.67770 * 179.97438 * 26 25 24 45 45 H 1.09007 * 108.94966 * 258.57380 * 29 9 7 46 46 H 1.09000 * 108.94673 * 17.19669 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7711 -6.7368 -0.1940 19 6 2.6718 -7.9471 -0.8026 20 6 4.0560 -8.0291 -0.7844 21 6 4.7094 -9.1055 -1.3732 22 6 4.0130 -10.1000 -1.9909 23 6 2.6076 -10.0548 -2.0386 24 7 1.9078 -11.0224 -2.6413 25 6 0.5965 -10.9553 -2.6718 26 6 -0.0761 -9.8839 -2.0806 27 7 0.5908 -8.9218 -1.4828 28 6 1.9243 -8.9688 -1.4394 29 6 1.7172 -3.6322 -0.0080 30 1 -0.4850 -0.8370 -0.0716 31 1 0.1564 -1.1629 1.7372 32 1 -0.0928 -2.9227 1.8305 33 1 2.4164 -1.5369 2.8962 34 1 0.9884 -1.8612 3.9052 35 1 2.5967 -3.5918 4.1904 36 1 1.1571 -4.2164 3.3746 37 1 3.5115 -3.3254 1.7253 38 1 3.5469 -4.9076 2.5408 39 1 3.6709 -5.8914 0.4519 40 1 4.6318 -7.2512 -0.3050 41 1 5.7880 -9.1518 -1.3443 42 1 4.5411 -10.9251 -2.4456 43 1 0.0327 -11.7374 -3.1585 44 1 -1.1549 -9.8448 -2.1156 45 1 0.8398 -3.9360 -0.5791 46 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034460467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = 40.081270 kcal Electronic energy + Delta-G solvation = -29378.605816 eV Core-core repulsion = 25461.150188 eV Total energy + Delta-G solvation = -3917.455628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54193 -41.00211 -39.42025 -38.25923 -36.43578 -35.71961 -35.07906 -33.03674 -32.35575 -31.87612 -30.85315 -27.81719 -26.57210 -26.17008 -25.45291 -25.03915 -24.05067 -21.93285 -21.34100 -20.99677 -19.81847 -19.37771 -19.24191 -18.10316 -17.56669 -17.17229 -16.73314 -16.34953 -16.16665 -15.98831 -15.81488 -15.53611 -15.29587 -15.22611 -15.07265 -14.70532 -14.49223 -14.19204 -13.98601 -13.45259 -13.21904 -12.95879 -12.85544 -12.80325 -12.73111 -12.61848 -12.59073 -12.40227 -12.07659 -11.89269 -11.81925 -11.59185 -11.40784 -11.24961 -11.12542 -10.54377 -10.13751 -10.06814 -10.00427 -9.68506 -8.87635 -8.19126 -5.49649 -1.08308 -0.51348 0.55498 1.58184 1.59799 1.65837 1.84919 1.96052 2.12331 2.66227 2.97982 3.02275 3.12703 3.16632 3.21240 3.49036 3.65485 3.69323 3.80025 3.91096 3.95111 4.08302 4.15703 4.23524 4.25080 4.31530 4.35653 4.47521 4.54808 4.69511 4.75128 4.81685 4.92515 4.94178 4.98754 5.03166 5.09885 5.18093 5.22327 5.25342 5.33853 5.41276 5.52966 5.58133 5.60185 5.91408 6.22334 6.34962 6.52088 6.73276 7.10734 7.23617 7.79943 8.17840 8.91573 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.002661 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.470840 B =10519.203574 C =10693.594667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.070 4.070 3 Si 1.112 2.888 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.361 4.361 8 H 0.046 0.954 9 N -0.596 5.596 10 C 0.142 3.858 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.104 4.104 14 C 0.153 3.847 15 H 0.056 0.944 16 N -0.705 5.705 17 C 0.545 3.455 18 O -0.551 6.551 19 C -0.134 4.134 20 C -0.038 4.038 21 C -0.095 4.095 22 C -0.057 4.057 23 C 0.051 3.949 24 N -0.439 5.439 25 C 0.083 3.917 26 C 0.072 3.928 27 N -0.447 5.447 28 C 0.083 3.917 29 C 0.148 3.852 30 H 0.249 0.751 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.414 0.586 40 H 0.172 0.828 41 H 0.191 0.809 42 H 0.170 0.830 43 H 0.220 0.780 44 H 0.200 0.800 45 H -0.025 1.025 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -23.673 0.015 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.267 4.267 3 Si 0.936 3.064 4 H -0.220 1.220 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.490 4.490 8 H 0.064 0.936 9 N -0.319 5.319 10 C 0.015 3.985 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.141 4.141 14 C 0.047 3.953 15 H 0.075 0.925 16 N -0.359 5.359 17 C 0.333 3.667 18 O -0.429 6.429 19 C -0.139 4.139 20 C -0.059 4.059 21 C -0.114 4.114 22 C -0.076 4.076 23 C -0.073 4.073 24 N -0.153 5.153 25 C -0.092 4.092 26 C -0.103 4.103 27 N -0.160 5.160 28 C -0.042 4.042 29 C 0.022 3.978 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.252 0.748 40 H 0.189 0.811 41 H 0.209 0.791 42 H 0.187 0.813 43 H 0.237 0.763 44 H 0.217 0.783 45 H -0.008 1.008 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.566 -21.901 0.134 24.768 hybrid contribution -0.596 -1.394 -0.521 1.603 sum 10.970 -23.295 -0.387 25.751 Atomic orbital electron populations 1.70909 1.08040 1.28913 1.48700 1.27264 0.96181 1.05162 0.98129 0.82919 0.74025 0.71921 0.77550 1.22037 1.20222 1.19896 1.20081 0.99982 0.90865 1.38108 0.93626 1.43735 1.59911 1.01521 1.26761 1.20910 0.92368 0.98960 0.86260 1.21203 1.00126 0.97841 0.97594 1.20254 0.99180 0.95818 0.98523 1.21195 0.97819 1.00667 0.94457 1.21053 0.96113 0.84871 0.93253 0.92539 1.45893 1.10751 1.21937 1.57344 1.18487 0.87042 0.82690 0.78529 1.90834 1.15275 1.78116 1.58637 1.19894 0.94896 0.95218 1.03878 1.22035 0.91072 0.98661 0.94087 1.21437 1.03159 0.91587 0.95250 1.21425 0.89629 1.00098 0.96454 1.19912 0.96891 0.92036 0.98462 1.68785 1.09062 1.24065 1.13421 1.24757 0.90699 0.98555 0.95201 1.24870 1.03726 0.89710 0.92034 1.68989 1.07554 1.25943 1.13533 1.19636 0.90888 0.95349 0.98348 1.21565 0.96391 0.85879 0.93990 0.94134 0.93735 0.96530 0.93065 0.91844 0.89981 0.93424 0.91556 0.88548 0.74754 0.81088 0.79135 0.81265 0.76321 0.78341 1.00751 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 12.18 21.65 0.26 -57.61 16 2 C -0.07 -4.01 4.68 84.86 0.40 -3.61 16 3 Si 1.11 50.95 30.01 68.60 2.06 53.01 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.36 -20.38 9.17 84.04 0.77 -19.60 16 8 H 0.05 2.58 7.97 -2.91 -0.02 2.55 16 9 N -0.60 -30.88 2.01 -697.68 -1.40 -32.28 16 10 C 0.14 6.96 4.89 87.38 0.43 7.39 16 11 C -0.13 -4.97 5.74 29.40 0.17 -4.80 16 12 C -0.10 -3.13 5.16 28.61 0.15 -2.98 16 13 C -0.10 -3.11 5.07 29.76 0.15 -2.96 16 14 C 0.15 5.54 2.27 44.74 0.10 5.64 16 15 H 0.06 2.35 6.74 -2.39 -0.02 2.34 16 16 N -0.71 -20.47 4.93 -446.94 -2.20 -22.67 16 17 C 0.55 18.74 7.72 86.69 0.67 19.41 16 18 O -0.55 -24.78 14.85 -4.00 -0.06 -24.84 16 19 C -0.13 -3.62 5.90 -19.87 -0.12 -3.73 16 20 C -0.04 -0.59 9.52 22.56 0.21 -0.37 16 21 C -0.10 -0.98 9.93 21.98 0.22 -0.76 16 22 C -0.06 -0.82 9.97 22.40 0.22 -0.60 16 23 C 0.05 1.16 6.59 40.28 0.27 1.42 16 24 N -0.44 -9.22 10.46 -188.15 -1.97 -11.18 16 25 C 0.08 1.39 11.21 85.11 0.95 2.34 16 26 C 0.07 1.56 11.22 85.09 0.95 2.52 16 27 N -0.45 -14.41 8.56 -187.41 -1.60 -16.02 16 28 C 0.08 2.42 6.60 40.58 0.27 2.68 16 29 C 0.15 6.92 5.86 86.61 0.51 7.42 16 30 H 0.25 16.29 7.39 -92.71 -0.69 15.61 16 31 H 0.04 2.52 5.28 -2.39 -0.01 2.50 16 32 H 0.02 0.81 8.06 -2.38 -0.02 0.79 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.52 7.35 -2.38 -0.02 1.50 16 37 H 0.07 2.26 7.49 -2.39 -0.02 2.24 16 38 H 0.10 2.11 7.94 -2.38 -0.02 2.09 16 39 H 0.41 8.16 6.57 -92.71 -0.61 7.55 16 40 H 0.17 1.43 6.37 -2.91 -0.02 1.41 16 41 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 42 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 45 H -0.03 -1.39 8.14 -2.38 -0.02 -1.41 16 46 H 0.05 2.16 7.86 -2.39 -0.02 2.14 16 Total: -1.00 -87.60 369.63 1.90 -85.71 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.49 Total: 16.49 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 6.32 Total: 9.40 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -6.92 Total: -139.77 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.06 Total: 53.01 kcal Total: -87.60 1.90 -85.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034460467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.787 kcal (2) G-P(sol) polarization free energy of solvation -87.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds