Wall clock time and date at job start Sat Apr 11 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00480 * 2 1 4 4 H 1.48492 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46702 * 300.00159 * 3 2 1 6 6 H 1.48505 * 109.46817 * 59.99709 * 3 2 1 7 7 C 1.38813 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00586 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99783 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46970 * 325.00172 * 10 9 7 12 12 C 1.52995 * 109.47028 * 85.00158 * 10 9 7 13 13 C 1.53006 * 109.47415 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46777 * 300.00100 * 13 12 10 15 15 H 1.08999 * 109.47218 * 300.00225 * 14 13 12 16 16 N 1.46500 * 109.46971 * 179.97438 * 14 13 12 17 17 C 1.34776 * 119.99998 * 84.99967 * 16 14 13 18 18 O 1.21600 * 119.99733 * 0.02562 * 17 16 14 19 19 C 1.47501 * 119.99992 * 179.97438 * 17 16 14 20 20 C 1.38675 * 120.34350 * 0.02562 * 19 17 16 21 21 C 1.38991 * 120.63743 * 179.70645 * 20 19 17 22 22 C 1.36218 * 121.13727 * 0.55962 * 21 20 19 23 23 C 1.40694 * 120.17013 * 359.44102 * 22 21 20 24 24 N 1.33762 * 120.97232 * 180.30084 * 23 22 21 25 25 C 1.31336 * 119.72787 * 179.97438 * 24 23 22 26 26 C 1.39646 * 120.68139 * 0.02562 * 25 24 23 27 27 N 1.31443 * 120.64622 * 0.02562 * 26 25 24 28 28 C 1.33500 * 119.72095 * 359.97438 * 27 26 25 29 29 C 1.53003 * 109.47139 * 59.99962 * 14 13 12 30 30 C 1.52996 * 109.47097 * 205.00171 * 10 9 7 31 31 H 0.97010 * 119.99760 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00184 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47382 * 299.99849 * 12 10 9 34 34 H 1.08997 * 109.47561 * 59.99857 * 12 10 9 35 35 H 1.08995 * 109.47226 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.46873 * 59.99435 * 13 12 10 37 37 H 0.97000 * 119.99963 * 264.99659 * 16 14 13 38 38 H 1.07997 * 119.67601 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.43019 * 180.27754 * 21 20 19 40 40 H 1.08002 * 119.91660 * 179.72335 * 22 21 20 41 41 H 1.08002 * 119.65250 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.67565 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47084 * 59.99581 * 29 14 13 44 44 H 1.09003 * 109.46821 * 180.02562 * 29 14 13 45 45 H 1.08998 * 109.46943 * 59.99857 * 30 10 9 46 46 H 1.09003 * 109.47211 * 299.99853 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6568 0.0027 11 1 2.9686 -3.5511 -0.5868 12 6 2.4216 -4.0344 1.4400 13 6 3.1872 -5.3591 1.4413 14 6 2.3104 -6.4553 0.8324 15 1 1.3997 -6.5614 1.4217 16 7 3.0436 -7.7236 0.8330 17 6 3.0354 -8.5062 1.9302 18 8 2.4191 -8.1597 2.9195 19 6 3.7732 -9.7835 1.9306 20 6 4.4780 -10.1858 0.8061 21 6 5.1802 -11.3852 0.8019 22 6 5.1871 -12.2013 1.8925 23 6 4.4859 -11.8332 3.0555 24 7 4.4867 -12.6195 4.1376 25 6 3.8242 -12.2517 5.2103 26 6 3.1176 -11.0474 5.2335 27 7 3.1020 -10.2594 4.1815 28 6 3.7682 -10.6128 3.0799 29 6 1.9467 -6.0778 -0.6050 30 6 1.1806 -4.7527 -0.6059 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0016 33 1 3.0466 -3.2537 1.8737 34 1 1.5110 -4.1401 2.0296 35 1 3.4460 -5.6283 2.4653 36 1 4.0979 -5.2530 0.8518 37 1 3.5349 -8.0002 0.0436 38 1 4.4847 -9.5589 -0.0733 39 1 5.7262 -11.6774 -0.0830 40 1 5.7358 -13.1311 1.8661 41 1 3.8260 -12.8873 6.0835 42 1 2.5787 -10.7606 6.1245 43 1 2.8574 -5.9716 -1.1944 44 1 1.3217 -6.8585 -1.0386 45 1 0.9214 -4.4837 -1.6299 46 1 0.2699 -4.8584 -0.0164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034763264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:48 Heat of formation + Delta-G solvation = 42.738653 kcal Electronic energy + Delta-G solvation = -28358.867914 eV Core-core repulsion = 24441.527519 eV Total energy + Delta-G solvation = -3917.340395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85523 -39.93881 -38.12912 -37.46118 -35.10305 -34.76580 -33.11991 -31.43248 -31.25535 -30.39431 -30.28187 -27.36502 -25.86365 -24.59704 -24.16457 -23.24441 -22.31375 -21.08745 -20.55636 -19.57337 -19.10986 -18.63505 -17.41579 -17.04648 -16.66868 -16.00237 -15.62286 -15.48588 -15.15309 -14.75219 -14.67228 -14.46090 -14.12022 -13.80771 -13.67129 -13.52958 -13.02100 -12.69218 -12.53032 -12.33635 -12.28921 -12.03982 -11.93318 -11.90536 -11.78005 -11.39953 -11.01293 -10.81498 -10.74017 -10.64599 -10.14794 -10.08786 -10.04945 -9.72723 -9.58997 -9.45951 -9.24613 -9.10130 -8.89152 -8.81749 -6.91501 -5.73498 -3.01754 -0.43208 0.11212 1.29327 2.19665 2.96682 3.01952 3.44932 3.50516 3.52752 3.57364 3.69545 3.73918 3.88683 4.21074 4.31087 4.50898 4.60401 4.62510 4.75911 4.85701 4.94875 5.06954 5.22566 5.27987 5.33406 5.41862 5.54329 5.63642 5.65801 5.70580 5.71734 5.75636 5.88166 5.90535 6.05860 6.11552 6.26264 6.28976 6.32931 6.51557 6.59716 6.68363 6.75878 6.88285 7.01997 7.18367 7.36311 7.47476 7.73622 8.20913 8.45476 9.56414 10.15389 10.49838 11.49362 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002009 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.818222 B =13937.108019 C =14407.919921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.148 3.852 15 H 0.089 0.911 16 N -0.724 5.724 17 C 0.549 3.451 18 O -0.495 6.495 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.107 4.107 22 C -0.060 4.060 23 C 0.070 3.930 24 N -0.427 5.427 25 C 0.077 3.923 26 C 0.077 3.923 27 N -0.387 5.387 28 C 0.112 3.888 29 C -0.119 4.119 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -29.623 3.103 31.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.044 3.956 15 H 0.107 0.893 16 N -0.376 5.376 17 C 0.334 3.666 18 O -0.368 6.368 19 C -0.099 4.099 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.080 4.080 23 C -0.054 4.054 24 N -0.141 5.141 25 C -0.099 4.099 26 C -0.099 4.099 27 N -0.100 5.100 28 C -0.014 4.014 29 C -0.157 4.157 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.228 0.772 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.140 -29.140 3.601 31.064 hybrid contribution 0.435 0.753 -0.180 0.888 sum 10.575 -28.388 3.420 30.486 Atomic orbital electron populations 1.69673 1.05080 1.25443 1.57984 1.24744 0.95515 0.97662 1.03249 0.86141 0.78776 0.84296 0.77149 1.20603 1.21941 1.21925 1.19288 0.90984 0.84154 1.42209 0.91188 1.42442 1.05803 0.99816 1.88543 1.20240 0.94267 0.85963 0.92804 0.93621 1.22221 0.99789 0.94489 1.00781 1.21899 0.98536 0.95346 1.00500 1.21120 0.95458 0.81477 0.97535 0.89306 1.46103 1.53660 1.22097 1.15748 1.17883 0.81584 0.83312 0.83789 1.90881 1.41268 1.72438 1.32222 1.20015 1.00795 0.95879 0.93162 1.21590 0.93566 0.96165 0.97002 1.20945 0.98954 0.93821 0.98978 1.20998 0.96526 1.00045 0.90436 1.19549 0.98705 0.92484 0.94684 1.68710 1.15876 1.30414 0.99115 1.24139 0.92757 0.96010 0.96989 1.24325 0.96332 0.91292 0.97919 1.69054 1.13184 1.29484 0.98234 1.19323 0.95588 0.93042 0.93466 1.21764 1.00806 0.98314 0.94832 1.21761 0.98957 0.93430 1.01772 0.93622 0.78310 0.91838 0.92460 0.92333 0.92354 0.77169 0.84101 0.83841 0.83861 0.80650 0.80594 0.91573 0.91868 0.91357 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.55 9.93 -15.05 -0.15 -6.70 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.21 5.12 -53.43 -0.27 -18.49 16 10 C 0.18 3.46 2.77 -67.94 -0.19 3.27 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.43 5.50 -26.73 -0.15 -2.58 16 13 C -0.12 -1.87 5.50 -26.73 -0.15 -2.01 16 14 C 0.15 1.97 2.45 -67.93 -0.17 1.81 16 15 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 16 N -0.72 -8.02 5.03 -54.85 -0.28 -8.30 16 17 C 0.55 7.43 7.73 -12.49 -0.10 7.33 16 18 O -0.49 -8.76 14.85 5.28 0.08 -8.68 16 19 C -0.09 -1.04 5.90 -104.63 -0.62 -1.66 16 20 C -0.06 -0.44 9.52 -39.14 -0.37 -0.81 16 21 C -0.11 -0.59 9.93 -40.03 -0.40 -0.99 16 22 C -0.06 -0.44 9.97 -39.38 -0.39 -0.83 16 23 C 0.07 0.72 6.59 -84.82 -0.56 0.16 16 24 N -0.43 -4.14 10.46 -10.82 -0.11 -4.25 16 25 C 0.08 0.57 11.21 -17.24 -0.19 0.37 16 26 C 0.08 0.68 11.22 -17.19 -0.19 0.49 16 27 N -0.39 -5.09 8.56 -10.59 -0.09 -5.18 16 28 C 0.11 1.36 6.60 -84.53 -0.56 0.80 16 29 C -0.12 -1.45 5.39 -26.70 -0.14 -1.59 16 30 C -0.12 -1.92 5.39 -26.70 -0.14 -2.06 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.25 7.80 -40.82 -0.32 9.94 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.39 2.99 6.63 -40.82 -0.27 2.72 16 38 H 0.14 0.56 6.37 -52.49 -0.33 0.22 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -36.74 379.01 -10.18 -46.92 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.36 Total: 7.96 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -4.56 Total: -5.54 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.03 Total: -63.94 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.74 -10.18 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034763264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.662 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds