Wall clock time and date at job start Sat Apr 11 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47014 * 270.00115 * 3 2 1 5 5 H 1.48494 * 109.47002 * 30.00000 * 3 2 1 6 6 H 1.48495 * 109.47238 * 149.99978 * 3 2 1 7 7 C 1.38813 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00036 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99808 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47337 * 35.00544 * 10 9 7 12 12 C 1.53002 * 109.46904 * 154.99904 * 10 9 7 13 13 C 1.53005 * 109.47378 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.46956 * 300.00177 * 13 12 10 15 15 H 1.08997 * 109.47415 * 300.00124 * 14 13 12 16 16 N 1.46501 * 109.47252 * 179.97438 * 14 13 12 17 17 C 1.34775 * 119.99969 * 154.99819 * 16 14 13 18 18 O 1.21553 * 120.00223 * 0.02562 * 17 16 14 19 19 C 1.47870 * 119.99789 * 180.02562 * 17 16 14 20 20 C 1.40612 * 119.75429 * 359.97438 * 19 17 16 21 21 C 1.35730 * 120.83162 * 179.72139 * 20 19 17 22 22 C 1.40703 * 120.08481 * 0.23218 * 21 20 19 23 23 N 1.33796 * 120.85581 * 180.02562 * 22 21 20 24 24 C 1.31329 * 119.76275 * 179.97438 * 23 22 21 25 25 C 1.39752 * 120.70960 * 0.02562 * 24 23 22 26 26 N 1.31275 * 120.67646 * 0.02562 * 25 24 23 27 27 C 1.33823 * 119.73569 * 359.97438 * 26 25 24 28 28 C 1.38416 * 119.75289 * 180.26082 * 19 17 16 29 29 C 1.53002 * 109.47222 * 59.99727 * 14 13 12 30 30 C 1.52992 * 109.47252 * 274.99973 * 10 9 7 31 31 H 0.97003 * 120.00022 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99750 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47026 * 60.00051 * 12 10 9 34 34 H 1.09004 * 109.47137 * 299.99902 * 12 10 9 35 35 H 1.08997 * 109.46897 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46712 * 59.99835 * 13 12 10 37 37 H 0.96995 * 119.99773 * 335.00343 * 16 14 13 38 38 H 1.08002 * 119.58637 * 0.02562 * 20 19 17 39 39 H 1.08007 * 119.95550 * 180.25982 * 21 20 19 40 40 H 1.08003 * 119.64287 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.66336 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.25395 * 359.97438 * 28 19 17 43 43 H 1.09003 * 109.47026 * 60.00036 * 29 14 13 44 44 H 1.09002 * 109.46986 * 179.97438 * 29 14 13 45 45 H 1.08996 * 109.47130 * 299.99800 * 30 10 9 46 46 H 1.08998 * 109.47139 * 60.00433 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0022 11 1 3.5649 -3.2069 -0.5870 12 6 5.4995 -2.2594 -0.6071 13 6 6.2643 -3.5846 -0.6065 14 6 6.4098 -4.0888 0.8306 15 1 6.9571 -3.3532 1.4201 16 7 7.1416 -5.3580 0.8311 17 6 7.8238 -5.7420 1.9282 18 8 7.8316 -5.0356 2.9173 19 6 8.5628 -7.0228 1.9285 20 6 8.5499 -7.8362 0.7816 21 6 9.2252 -9.0133 0.7560 22 6 9.9467 -9.4373 1.8871 23 7 10.6182 -10.5945 1.8785 24 6 11.2850 -10.9692 2.9461 25 6 11.3011 -10.1720 4.0938 26 7 10.6494 -9.0329 4.1273 27 6 9.9625 -8.6294 3.0520 28 6 9.2574 -7.4148 3.0598 29 6 5.0224 -4.3003 1.4399 30 6 4.2576 -2.9746 1.4395 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0007 33 1 6.0467 -1.5235 -0.0179 34 1 5.3958 -1.9007 -1.6311 35 1 7.2525 -3.4339 -1.0410 36 1 5.7169 -4.3202 -1.1959 37 1 7.1351 -5.9218 0.0419 38 1 7.9996 -7.5181 -0.0916 39 1 9.2090 -9.6251 -0.1340 40 1 11.8260 -11.9039 2.9373 41 1 11.8547 -10.4967 4.9625 42 1 9.2613 -6.7890 3.9400 43 1 4.4750 -5.0360 0.8504 44 1 5.1261 -4.6600 2.4636 45 1 4.8048 -2.2387 2.0287 46 1 3.2692 -3.1253 1.8735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034791295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:52 Heat of formation + Delta-G solvation = 38.481744 kcal Electronic energy + Delta-G solvation = -27928.292328 eV Core-core repulsion = 24010.767340 eV Total energy + Delta-G solvation = -3917.524989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94202 -40.31854 -38.38646 -37.33171 -35.35810 -35.06918 -33.21797 -31.64958 -31.11827 -30.80536 -30.50636 -27.97656 -26.01832 -25.05797 -23.52046 -22.76553 -22.50965 -21.60068 -20.84906 -19.86791 -19.07616 -18.77644 -17.64140 -17.48715 -16.88490 -16.21385 -15.69311 -15.24443 -15.16542 -15.01380 -14.73641 -14.56450 -14.31699 -14.20738 -13.86071 -13.52946 -13.05762 -12.93171 -12.69527 -12.37117 -12.31971 -12.24580 -12.20000 -12.14928 -12.00315 -11.76659 -11.18855 -10.91709 -10.88747 -10.70429 -10.29478 -10.24538 -10.04978 -9.85009 -9.66986 -9.57122 -9.56599 -9.19598 -9.04740 -8.88228 -7.25209 -5.75837 -3.11106 -0.46057 -0.12323 1.30776 1.86229 2.79043 2.90425 3.38722 3.41861 3.44583 3.46649 3.51658 3.59664 3.69315 4.17189 4.27597 4.33967 4.47703 4.58541 4.60398 4.79186 4.82690 4.92021 5.07789 5.15208 5.30938 5.44562 5.45216 5.49012 5.52550 5.56102 5.59748 5.68437 5.73521 5.76642 5.89994 6.00368 6.07286 6.13751 6.16211 6.33489 6.42642 6.48746 6.62022 6.68631 6.88579 7.04370 7.14637 7.25966 7.94790 8.00898 8.43460 9.22327 9.95070 10.14931 11.42559 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.001803 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.729414 B =15529.485299 C =15721.593880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.181 3.819 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.119 4.119 14 C 0.144 3.856 15 H 0.090 0.910 16 N -0.717 5.717 17 C 0.556 3.444 18 O -0.527 6.527 19 C -0.113 4.113 20 C -0.073 4.073 21 C -0.086 4.086 22 C 0.092 3.908 23 N -0.428 5.428 24 C 0.085 3.915 25 C 0.074 3.926 26 N -0.416 5.416 27 C 0.069 3.931 28 C -0.013 4.013 29 C -0.125 4.125 30 C -0.133 4.133 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.156 0.844 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.530 -23.265 2.080 34.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.157 4.157 14 C 0.041 3.959 15 H 0.108 0.892 16 N -0.368 5.368 17 C 0.342 3.658 18 O -0.403 6.403 19 C -0.118 4.118 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.032 4.032 23 N -0.142 5.142 24 C -0.091 4.091 25 C -0.102 4.102 26 N -0.130 5.130 27 C -0.055 4.055 28 C -0.033 4.033 29 C -0.164 4.164 30 C -0.173 4.173 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.195 0.805 41 H 0.195 0.805 42 H 0.174 0.826 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 25.109 -22.610 2.654 33.893 hybrid contribution 0.583 0.776 -0.235 0.999 sum 25.692 -21.834 2.419 33.803 Atomic orbital electron populations 1.69702 1.05109 1.25779 1.57672 1.24675 0.95228 0.97205 1.02124 0.86551 0.79262 0.85027 0.77704 1.21157 1.21813 1.20293 1.19079 0.80633 0.94656 1.42802 0.89234 1.42792 1.03991 1.02060 1.90287 1.20221 0.90215 0.89151 0.93219 0.92654 1.21795 0.96884 0.95804 1.01814 1.21742 1.00611 0.98551 0.94845 1.21188 0.92814 0.84245 0.97669 0.89196 1.46067 1.51254 1.23655 1.15802 1.18079 0.79030 0.85146 0.83537 1.90825 1.62257 1.54296 1.32960 1.20074 1.00648 0.96142 0.94916 1.21064 0.97421 0.93482 0.97420 1.20689 0.96020 0.96492 0.97292 1.19689 0.97043 0.91756 0.94717 1.68747 1.04986 1.13008 1.27439 1.24191 0.95138 1.00464 0.89304 1.24147 0.96112 0.90503 0.99393 1.68701 1.04137 1.14109 1.26016 1.19459 0.98620 0.96409 0.90964 1.21269 0.90928 0.92804 0.98341 1.21914 0.94461 0.99289 1.00716 1.22201 1.00057 0.94709 1.00379 0.93109 0.80696 0.92038 0.91187 0.91685 0.91257 0.76699 0.84145 0.83535 0.80505 0.80470 0.82628 0.91998 0.92112 0.92553 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.37 4.93 -53.43 -0.26 -17.63 16 10 C 0.18 3.30 2.77 -67.93 -0.19 3.12 16 11 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.12 -1.77 5.39 -26.73 -0.14 -1.92 16 13 C -0.12 -1.29 5.39 -26.73 -0.14 -1.43 16 14 C 0.14 1.72 2.45 -67.93 -0.17 1.56 16 15 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 16 N -0.72 -6.93 5.03 -54.74 -0.28 -7.20 16 17 C 0.56 6.47 7.73 -12.32 -0.10 6.38 16 18 O -0.53 -8.23 15.96 5.32 0.08 -8.15 16 19 C -0.11 -1.07 5.87 -104.99 -0.62 -1.68 16 20 C -0.07 -0.49 9.44 -39.58 -0.37 -0.87 16 21 C -0.09 -0.61 9.95 -39.55 -0.39 -1.01 16 22 C 0.09 0.84 6.59 -84.73 -0.56 0.28 16 23 N -0.43 -3.56 10.46 -10.74 -0.11 -3.67 16 24 C 0.08 0.45 11.21 -17.20 -0.19 0.26 16 25 C 0.07 0.43 11.21 -17.22 -0.19 0.23 16 26 N -0.42 -3.90 10.46 -10.81 -0.11 -4.02 16 27 C 0.07 0.69 6.58 -84.82 -0.56 0.13 16 28 C -0.01 -0.13 9.56 -38.68 -0.37 -0.50 16 29 C -0.12 -1.73 5.50 -26.70 -0.15 -1.88 16 30 C -0.13 -2.28 5.51 -26.71 -0.15 -2.43 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.36 8.26 5.66 -40.82 -0.23 8.03 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 2.55 6.59 -40.82 -0.27 2.28 16 38 H 0.14 0.52 6.35 -52.49 -0.33 0.18 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.18 0.22 8.06 -52.48 -0.42 -0.20 16 41 H 0.18 0.31 8.06 -52.48 -0.42 -0.11 16 42 H 0.16 1.71 7.61 -52.48 -0.40 1.31 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -36.09 377.88 -9.75 -45.84 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.29 Total: 6.93 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -4.54 Total: -6.66 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.01 Total: -61.09 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.09 -9.75 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034791295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.326 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds