Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47014 * 270.00115 * 3 2 1 5 5 H 1.48494 * 109.47002 * 30.00000 * 3 2 1 6 6 H 1.48495 * 109.47238 * 149.99978 * 3 2 1 7 7 C 1.38813 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00036 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99808 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47337 * 35.00544 * 10 9 7 12 12 C 1.53002 * 109.46904 * 154.99904 * 10 9 7 13 13 C 1.53005 * 109.47378 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.46956 * 300.00177 * 13 12 10 15 15 H 1.08997 * 109.47415 * 300.00124 * 14 13 12 16 16 N 1.46501 * 109.47252 * 179.97438 * 14 13 12 17 17 C 1.34775 * 119.99969 * 154.99819 * 16 14 13 18 18 O 1.21553 * 120.00223 * 0.02562 * 17 16 14 19 19 C 1.47870 * 119.99789 * 180.02562 * 17 16 14 20 20 C 1.40612 * 119.75429 * 359.97438 * 19 17 16 21 21 C 1.35730 * 120.83162 * 179.72139 * 20 19 17 22 22 C 1.40703 * 120.08481 * 0.23218 * 21 20 19 23 23 N 1.33796 * 120.85581 * 180.02562 * 22 21 20 24 24 C 1.31329 * 119.76275 * 179.97438 * 23 22 21 25 25 C 1.39752 * 120.70960 * 0.02562 * 24 23 22 26 26 N 1.31275 * 120.67646 * 0.02562 * 25 24 23 27 27 C 1.33823 * 119.73569 * 359.97438 * 26 25 24 28 28 C 1.38416 * 119.75289 * 180.26082 * 19 17 16 29 29 C 1.53002 * 109.47222 * 59.99727 * 14 13 12 30 30 C 1.52992 * 109.47252 * 274.99973 * 10 9 7 31 31 H 0.97003 * 120.00022 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99750 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47026 * 60.00051 * 12 10 9 34 34 H 1.09004 * 109.47137 * 299.99902 * 12 10 9 35 35 H 1.08997 * 109.46897 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.46712 * 59.99835 * 13 12 10 37 37 H 0.96995 * 119.99773 * 335.00343 * 16 14 13 38 38 H 1.08002 * 119.58637 * 0.02562 * 20 19 17 39 39 H 1.08007 * 119.95550 * 180.25982 * 21 20 19 40 40 H 1.08003 * 119.64287 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.66336 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.25395 * 359.97438 * 28 19 17 43 43 H 1.09003 * 109.47026 * 60.00036 * 29 14 13 44 44 H 1.09002 * 109.46986 * 179.97438 * 29 14 13 45 45 H 1.08996 * 109.47130 * 299.99800 * 30 10 9 46 46 H 1.08998 * 109.47139 * 60.00433 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0022 11 1 3.5649 -3.2069 -0.5870 12 6 5.4995 -2.2594 -0.6071 13 6 6.2643 -3.5846 -0.6065 14 6 6.4098 -4.0888 0.8306 15 1 6.9571 -3.3532 1.4201 16 7 7.1416 -5.3580 0.8311 17 6 7.8238 -5.7420 1.9282 18 8 7.8316 -5.0356 2.9173 19 6 8.5628 -7.0228 1.9285 20 6 8.5499 -7.8362 0.7816 21 6 9.2252 -9.0133 0.7560 22 6 9.9467 -9.4373 1.8871 23 7 10.6182 -10.5945 1.8785 24 6 11.2850 -10.9692 2.9461 25 6 11.3011 -10.1720 4.0938 26 7 10.6494 -9.0329 4.1273 27 6 9.9625 -8.6294 3.0520 28 6 9.2574 -7.4148 3.0598 29 6 5.0224 -4.3003 1.4399 30 6 4.2576 -2.9746 1.4395 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0007 33 1 6.0467 -1.5235 -0.0179 34 1 5.3958 -1.9007 -1.6311 35 1 7.2525 -3.4339 -1.0410 36 1 5.7169 -4.3202 -1.1959 37 1 7.1351 -5.9218 0.0419 38 1 7.9996 -7.5181 -0.0916 39 1 9.2090 -9.6251 -0.1340 40 1 11.8260 -11.9039 2.9373 41 1 11.8547 -10.4967 4.9625 42 1 9.2613 -6.7890 3.9400 43 1 4.4750 -5.0360 0.8504 44 1 5.1261 -4.6600 2.4636 45 1 4.8048 -2.2387 2.0287 46 1 3.2692 -3.1253 1.8735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034791295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = 12.011126 kcal Electronic energy + Delta-G solvation = -27929.440181 eV Core-core repulsion = 24010.767340 eV Total energy + Delta-G solvation = -3918.672841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.50234 -41.23429 -39.51478 -38.07560 -36.53798 -35.86539 -34.74636 -33.05176 -31.95583 -31.71240 -31.68289 -29.33207 -26.77300 -25.63731 -25.14347 -23.77653 -23.47456 -22.61505 -21.96707 -21.17717 -19.97804 -19.48049 -19.27994 -18.19913 -17.64584 -17.06974 -16.78678 -16.40252 -16.22929 -15.89582 -15.69260 -15.46563 -15.19562 -15.03926 -14.96651 -14.84894 -14.64377 -14.35277 -13.69390 -13.58229 -13.40286 -13.10159 -12.97525 -12.89110 -12.84450 -12.81899 -12.75824 -12.41830 -12.30104 -12.04931 -11.99403 -11.78963 -11.47641 -11.21712 -11.14331 -10.87678 -10.23500 -10.19534 -10.01553 -9.73314 -9.28444 -8.00852 -5.33365 -1.05166 -0.65045 0.68792 1.26866 1.38351 1.41508 1.48699 1.94117 2.15660 2.49643 2.92372 2.97258 3.09346 3.16783 3.30108 3.46949 3.62956 3.74447 3.75970 3.85552 3.88001 3.97603 4.10986 4.25546 4.32757 4.36554 4.41254 4.50918 4.59233 4.61979 4.67425 4.70585 4.83495 4.91948 4.95628 5.01146 5.11364 5.14758 5.15660 5.24781 5.27459 5.42045 5.48934 5.52399 5.61020 5.80138 6.18094 6.23999 6.46419 6.63772 7.10417 7.11750 7.88058 8.06214 9.20818 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.001803 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.729414 B =15529.485299 C =15721.593880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.254 1.254 7 C -0.225 4.225 8 H 0.056 0.944 9 N -0.753 5.753 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.151 3.849 15 H 0.071 0.929 16 N -0.698 5.698 17 C 0.556 3.444 18 O -0.575 6.575 19 C -0.117 4.117 20 C -0.066 4.066 21 C -0.082 4.082 22 C 0.075 3.925 23 N -0.449 5.449 24 C 0.097 3.903 25 C 0.083 3.917 26 N -0.455 5.455 27 C 0.047 3.953 28 C -0.032 4.032 29 C -0.115 4.115 30 C -0.125 4.125 31 H 0.256 0.744 32 H 0.364 0.636 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.176 0.824 39 H 0.171 0.829 40 H 0.223 0.777 41 H 0.217 0.783 42 H 0.134 0.866 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.853 -25.269 0.357 38.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.179 1.179 7 C -0.357 4.357 8 H 0.074 0.926 9 N -0.396 5.396 10 C 0.066 3.934 11 H 0.067 0.933 12 C -0.156 4.156 13 C -0.145 4.145 14 C 0.047 3.953 15 H 0.089 0.911 16 N -0.350 5.350 17 C 0.344 3.656 18 O -0.455 6.455 19 C -0.122 4.122 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.047 4.047 23 N -0.164 5.164 24 C -0.079 4.079 25 C -0.093 4.093 26 N -0.169 5.169 27 C -0.075 4.075 28 C -0.053 4.053 29 C -0.154 4.154 30 C -0.166 4.166 31 H 0.065 0.935 32 H 0.197 0.803 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.257 0.743 38 H 0.193 0.807 39 H 0.188 0.812 40 H 0.239 0.761 41 H 0.234 0.766 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 28.472 -24.652 0.879 37.672 hybrid contribution -0.374 1.152 0.414 1.280 sum 28.098 -23.500 1.294 36.653 Atomic orbital electron populations 1.69888 1.07126 1.26514 1.60136 1.25501 0.96102 1.01228 1.03037 0.85408 0.78507 0.79718 0.78134 1.20144 1.22673 1.17918 1.19047 0.82778 0.93299 1.40533 0.92567 1.42851 1.02402 1.04158 1.90184 1.20499 0.92202 0.86947 0.93723 0.93266 1.21703 0.94231 0.98035 1.01617 1.21674 1.01971 0.96909 0.93970 1.20947 0.91212 0.84889 0.98266 0.91097 1.45802 1.50058 1.23047 1.16108 1.18423 0.78709 0.85406 0.83083 1.90804 1.64021 1.55883 1.34826 1.19937 1.00747 0.95593 0.95889 1.21310 0.97271 0.92783 0.97244 1.21005 0.95056 0.96620 0.97448 1.19971 0.97672 0.92138 0.94944 1.68832 1.05967 1.12791 1.28760 1.24983 0.93490 1.01358 0.88118 1.24915 0.94530 0.89051 1.00839 1.68697 1.05607 1.16126 1.26478 1.19501 0.99486 0.96608 0.91942 1.21195 0.92404 0.93431 0.98281 1.21790 0.95673 0.97376 1.00561 1.22026 0.98689 0.96495 0.99392 0.93503 0.80281 0.92005 0.90480 0.88672 0.89173 0.74291 0.80652 0.81163 0.76109 0.76605 0.84793 0.90588 0.93498 0.93435 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.87 13.97 21.65 0.30 -63.57 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 6 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 7 C -0.23 -12.86 10.41 84.03 0.87 -11.98 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -34.74 4.93 -322.94 -1.59 -36.33 16 10 C 0.17 6.23 2.77 44.99 0.12 6.35 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 C -0.12 -3.05 5.39 30.60 0.16 -2.88 16 13 C -0.11 -1.92 5.39 30.59 0.16 -1.75 16 14 C 0.15 3.34 2.45 44.99 0.11 3.45 16 15 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 16 N -0.70 -11.93 5.03 -445.39 -2.24 -14.16 16 17 C 0.56 12.75 7.73 86.79 0.67 13.42 16 18 O -0.58 -18.70 15.96 -3.88 -0.06 -18.77 16 19 C -0.12 -2.16 5.87 -20.11 -0.12 -2.28 16 20 C -0.07 -0.73 9.44 22.27 0.21 -0.52 16 21 C -0.08 -0.99 9.95 22.29 0.22 -0.77 16 22 C 0.08 1.28 6.59 40.32 0.27 1.55 16 23 N -0.45 -6.47 10.46 -187.89 -1.96 -8.44 16 24 C 0.10 0.74 11.21 85.13 0.95 1.70 16 25 C 0.08 0.77 11.21 85.14 0.95 1.73 16 26 N -0.45 -8.45 10.46 -188.12 -1.97 -10.42 16 27 C 0.05 0.95 6.58 40.25 0.27 1.21 16 28 C -0.03 -0.71 9.56 22.85 0.22 -0.49 16 29 C -0.11 -3.13 5.50 30.61 0.17 -2.96 16 30 C -0.13 -4.39 5.51 30.61 0.17 -4.22 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.36 16.18 5.66 -92.71 -0.52 15.65 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 3.71 6.59 -92.71 -0.61 3.10 16 38 H 0.18 0.54 6.35 -2.91 -0.02 0.53 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.22 -0.48 8.06 -2.91 -0.02 -0.50 16 41 H 0.22 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.13 3.36 7.61 -2.91 -0.02 3.34 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -84.51 377.88 0.10 -84.41 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.17 Total: 21.35 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.89 Total: -2.02 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -7.46 Total: -132.92 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.06 Total: -18.77 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -84.51 0.10 -84.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034791295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.424 kcal (2) G-P(sol) polarization free energy of solvation -84.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds