Wall clock time and date at job start Sat Apr 11 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00227 * 2 1 4 4 H 1.48505 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47483 * 299.99921 * 3 2 1 6 6 H 1.48499 * 109.47068 * 60.00254 * 3 2 1 7 7 C 1.38816 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99557 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.47163 * 136.00466 * 359.63636 * 9 7 2 11 11 C 1.52932 * 87.86190 * 206.92080 * 10 9 7 12 12 C 1.47161 * 135.99748 * 179.97438 * 9 7 2 13 13 C 1.52559 * 114.11582 * 87.94487 * 11 10 9 14 14 C 1.53357 * 109.13016 * 190.31954 * 13 11 10 15 15 N 1.46887 * 108.74838 * 307.75888 * 14 13 11 16 16 C 1.34783 * 120.46115 * 235.64807 * 15 14 13 17 17 O 1.21594 * 120.00024 * 174.21664 * 16 15 14 18 18 C 1.47474 * 119.99687 * 354.22177 * 16 15 14 19 19 C 1.39001 * 120.29221 * 305.92858 * 18 16 15 20 20 C 1.38504 * 120.36503 * 179.77213 * 19 18 16 21 21 C 1.37825 * 120.78866 * 0.51269 * 20 19 18 22 22 C 1.39210 * 120.19876 * 359.74960 * 21 20 19 23 23 N 1.37218 * 133.64842 * 179.97438 * 22 21 20 24 24 H 0.97005 * 125.98204 * 0.02562 * 23 22 21 25 25 N 1.40030 * 108.03476 * 179.97438 * 23 22 21 26 26 C 1.30266 * 109.70299 * 0.02562 * 25 23 22 27 27 C 1.40679 * 119.79294 * 359.97438 * 22 21 20 28 28 C 1.46888 * 119.07943 * 55.62437 * 15 14 13 29 29 C 1.52559 * 114.12172 * 220.61540 * 11 10 9 30 30 H 0.97005 * 120.00037 * 0.02562 * 1 2 3 31 31 H 1.09009 * 113.48688 * 321.67045 * 10 9 7 32 32 H 1.08996 * 113.49245 * 92.17067 * 10 9 7 33 33 H 1.09003 * 113.49342 * 267.82696 * 12 9 7 34 34 H 1.08996 * 113.48956 * 38.33964 * 12 9 7 35 35 H 1.09000 * 109.52690 * 310.21162 * 13 11 10 36 36 H 1.08997 * 109.53002 * 70.42368 * 13 11 10 37 37 H 1.09002 * 109.59212 * 187.98206 * 14 13 11 38 38 H 1.08998 * 109.59322 * 67.53722 * 14 13 11 39 39 H 1.08004 * 119.81690 * 0.02562 * 19 18 16 40 40 H 1.08002 * 119.60753 * 180.24314 * 20 19 18 41 41 H 1.08006 * 119.89860 * 179.76437 * 21 20 19 42 42 H 1.08001 * 125.64482 * 179.97438 * 26 25 23 43 43 H 1.08995 * 109.59586 * 184.59115 * 28 15 14 44 44 H 1.09003 * 109.59282 * 64.14265 * 28 15 14 45 45 H 1.09005 * 109.52632 * 289.56490 * 29 11 10 46 46 H 1.09002 * 109.52359 * 49.70456 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.0892 -2.7937 0.0064 11 6 0.3453 -4.0902 0.6914 12 6 1.6814 -3.8160 -0.0015 13 6 0.4035 -4.0018 2.2133 14 6 1.0899 -5.2579 2.7637 15 7 0.4239 -6.4425 2.2064 16 6 -0.0832 -7.3883 3.0220 17 8 -0.7241 -8.3115 2.5577 18 6 0.1393 -7.3034 4.4773 19 6 1.4286 -7.1881 4.9840 20 6 1.6389 -7.1035 6.3503 21 6 0.5795 -7.1425 7.2310 22 6 -0.7230 -7.2628 6.7546 23 7 -1.9516 -7.3277 7.3623 24 1 -2.1173 -7.2959 8.3176 25 7 -2.9243 -7.4467 6.3620 26 6 -2.3519 -7.4575 5.1919 27 6 -0.9560 -7.3442 5.3696 28 6 0.3175 -6.5819 0.7481 29 6 -0.3747 -5.3355 0.1831 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7193 -2.1617 0.6323 32 1 -0.5023 -2.9465 -0.9906 33 1 1.7489 -4.2463 -1.0006 34 1 2.5477 -4.0481 0.6179 35 1 0.9715 -3.1186 2.5055 36 1 -0.6081 -3.9346 2.6134 37 1 1.0103 -5.2714 3.8508 38 1 2.1402 -5.2581 2.4721 39 1 2.2706 -7.1602 4.3082 40 1 2.6456 -7.0102 6.7304 41 1 0.7603 -7.0792 8.2939 42 1 -2.8610 -7.5397 4.2430 43 1 -0.2707 -7.4673 0.5074 44 1 1.3141 -6.6739 0.3161 45 1 -1.4138 -5.3152 0.5119 46 1 -0.3375 -5.3587 -0.9060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035762670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:01 Heat of formation + Delta-G solvation = 120.843119 kcal Electronic energy + Delta-G solvation = -29719.090929 eV Core-core repulsion = 25805.137397 eV Total energy + Delta-G solvation = -3913.953532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.80049 -40.30736 -38.83009 -37.14564 -35.77499 -33.00977 -32.46013 -31.23177 -30.44317 -30.17263 -29.60419 -26.95558 -25.03265 -24.51625 -23.28692 -23.10237 -22.71478 -21.88067 -21.23215 -19.94283 -18.38904 -17.34517 -17.12551 -16.68730 -16.41248 -15.79409 -15.49587 -15.25534 -15.01157 -14.85895 -14.64857 -14.51462 -13.95989 -13.79905 -13.62207 -13.58320 -13.07328 -12.64887 -12.32008 -12.27786 -12.12714 -11.97545 -11.91285 -11.65856 -11.19767 -11.08813 -11.02237 -10.87813 -10.81656 -10.61021 -10.39776 -10.24317 -9.79158 -9.72551 -9.59331 -9.20204 -8.96217 -8.80794 -8.45986 -8.27527 -6.86249 -5.76745 -3.08572 0.35885 1.12783 2.26453 2.41583 2.62177 2.99139 3.37666 3.42969 3.45654 3.49419 4.18584 4.41339 4.45264 4.55898 4.65389 4.72754 4.94283 5.02085 5.07008 5.15123 5.30193 5.37001 5.39448 5.41903 5.51158 5.55628 5.64051 5.67880 5.84678 5.87893 5.94895 6.00289 6.06823 6.09276 6.18107 6.29194 6.36138 6.41784 6.51351 6.60831 6.63782 6.81291 6.84237 6.97060 7.23454 7.28613 7.36786 7.42828 7.57727 7.98111 8.11493 9.03978 9.70728 10.65917 11.40654 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.002925 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.394868 B = 9570.668140 C =10157.809812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.166 3.834 11 C -0.115 4.115 12 C 0.128 3.872 13 C -0.094 4.094 14 C 0.104 3.896 15 N -0.595 5.595 16 C 0.558 3.442 17 O -0.538 6.538 18 C -0.039 4.039 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.128 4.128 22 C 0.125 3.875 23 N -0.508 5.508 24 H 0.442 0.558 25 N -0.249 5.249 26 C 0.086 3.914 27 C -0.140 4.140 28 C 0.115 3.885 29 C -0.114 4.114 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.195 0.805 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -16.327 13.463 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.334 5.334 10 C 0.040 3.960 11 C -0.117 4.117 12 C 0.001 3.999 13 C -0.132 4.132 14 C -0.019 4.019 15 N -0.327 5.327 16 C 0.345 3.655 17 O -0.416 6.416 18 C -0.045 4.045 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.007 3.993 23 N -0.223 5.223 24 H 0.287 0.713 25 N -0.063 5.063 26 C -0.109 4.109 27 C -0.148 4.148 28 C -0.007 4.007 29 C -0.153 4.153 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.212 0.788 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.109 -16.477 13.834 21.515 hybrid contribution 1.141 1.168 -0.105 1.637 sum 1.032 -15.308 13.729 20.589 Atomic orbital electron populations 1.69840 1.04975 1.25134 1.56626 1.24773 0.95640 0.97418 1.02632 0.86081 0.78732 0.83901 0.77262 1.20489 1.21812 1.21746 1.18957 0.90071 0.81542 1.43732 0.90224 1.45573 1.02684 0.99197 1.85918 1.22034 0.88747 0.88967 0.96203 1.22091 0.98758 0.95772 0.95053 1.22398 0.94439 0.86766 0.96266 1.21408 1.00871 0.96829 0.94053 1.22023 0.96714 0.84439 0.98691 1.48073 1.56545 1.21123 1.06935 1.18227 0.79032 0.82337 0.85871 1.90787 1.39887 1.34226 1.76715 1.19381 0.92820 0.99763 0.92543 1.21118 0.95474 1.01907 0.95898 1.20911 0.98750 0.97019 0.92429 1.20186 0.88721 1.05713 1.00355 1.18791 0.88246 0.99961 0.92254 1.46095 1.01619 1.66095 1.08526 0.71322 1.76788 1.14474 1.18533 0.96508 1.23963 0.91670 0.98202 0.97088 1.18627 0.93619 1.10485 0.92092 1.21674 1.01278 0.99453 0.78314 1.21731 0.99523 0.93576 1.00436 0.93762 0.91233 0.95863 0.95213 0.94567 0.89290 0.92110 0.89727 0.90950 0.84680 0.84430 0.85236 0.78844 0.89269 0.91232 0.91735 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 11.52 55.49 0.64 -26.24 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -5.88 10.74 -15.06 -0.16 -6.04 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.61 -14.96 3.55 -184.69 -0.66 -15.62 16 10 C 0.17 3.77 6.54 -8.23 -0.05 3.71 16 11 C -0.12 -1.99 0.84 -155.01 -0.13 -2.12 16 12 C 0.13 2.45 7.63 -8.21 -0.06 2.38 16 13 C -0.09 -1.49 5.28 -26.77 -0.14 -1.63 16 14 C 0.10 1.30 5.51 -3.65 -0.02 1.28 16 15 N -0.59 -7.77 2.94 -173.88 -0.51 -8.28 16 16 C 0.56 7.75 7.02 -12.49 -0.09 7.66 16 17 O -0.54 -8.92 16.46 5.28 0.09 -8.84 16 18 C -0.04 -0.47 4.64 -104.67 -0.49 -0.96 16 19 C -0.12 -1.17 7.71 -39.20 -0.30 -1.47 16 20 C -0.07 -0.53 9.99 -39.63 -0.40 -0.93 16 21 C -0.13 -1.02 10.06 -39.37 -0.40 -1.41 16 22 C 0.12 1.30 7.32 -84.17 -0.62 0.69 16 23 N -0.51 -5.00 7.45 32.35 0.24 -4.76 16 24 H 0.44 2.82 8.96 -182.65 -1.64 1.18 16 25 N -0.25 -3.05 12.58 30.81 0.39 -2.66 16 26 C 0.09 1.08 11.83 -17.10 -0.20 0.88 16 27 C -0.14 -1.73 6.00 -106.68 -0.64 -2.37 16 28 C 0.11 1.49 6.35 -3.64 -0.02 1.46 16 29 C -0.11 -1.64 5.30 -26.77 -0.14 -1.78 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.78 7.12 -51.92 -0.37 1.41 16 32 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.04 0.65 7.53 -51.93 -0.39 0.26 16 35 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.96 5.27 -51.93 -0.27 0.69 16 38 H 0.07 0.86 7.60 -51.93 -0.39 0.46 16 39 H 0.14 1.09 7.75 -52.48 -0.41 0.68 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.19 2.23 8.06 -52.49 -0.42 1.80 16 43 H 0.09 1.18 6.97 -51.93 -0.36 0.82 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.61 371.76 -10.78 -44.39 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.59 Total: 0.62 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -3.96 Total: -0.97 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.10 Total: -57.57 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.61 -10.78 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035762670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.231 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds