Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47459 * 300.00503 * 3 2 1 6 6 H 1.48498 * 109.47183 * 60.00552 * 3 2 1 7 7 C 1.38817 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99817 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.47169 * 136.00197 * 359.62149 * 9 7 2 11 11 C 1.52931 * 87.86390 * 206.93011 * 10 9 7 12 12 C 1.47160 * 135.99983 * 180.02562 * 9 7 2 13 13 C 1.52554 * 114.11345 * 87.94639 * 11 10 9 14 14 C 1.53355 * 109.13054 * 190.31971 * 13 11 10 15 15 N 1.46883 * 108.75271 * 307.76160 * 14 13 11 16 16 C 1.34781 * 120.46590 * 235.64800 * 15 14 13 17 17 O 1.21637 * 120.00395 * 174.17289 * 16 15 14 18 18 C 1.47230 * 119.99624 * 354.17668 * 16 15 14 19 19 C 1.38946 * 120.85812 * 306.07748 * 18 16 15 20 20 C 1.39738 * 119.29157 * 180.02562 * 19 18 16 21 21 C 1.35117 * 121.14412 * 359.97438 * 20 19 18 22 22 N 1.36146 * 121.72022 * 0.02960 * 21 20 19 23 23 C 1.36996 * 132.64155 * 179.97438 * 22 21 20 24 24 C 1.34960 * 107.15136 * 179.97438 * 23 22 21 25 25 N 1.33746 * 108.60525 * 0.02562 * 24 23 22 26 26 C 1.31984 * 109.16784 * 359.69077 * 25 24 23 27 27 C 1.46891 * 119.07513 * 55.62305 * 15 14 13 28 28 C 1.52557 * 114.12466 * 220.62272 * 11 10 9 29 29 H 0.96991 * 119.99637 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.49004 * 321.67997 * 10 9 7 31 31 H 1.09007 * 113.48435 * 92.18126 * 10 9 7 32 32 H 1.09006 * 113.48714 * 267.81905 * 12 9 7 33 33 H 1.08996 * 113.49184 * 38.32373 * 12 9 7 34 34 H 1.09000 * 109.53399 * 310.21496 * 13 11 10 35 35 H 1.08999 * 109.53041 * 70.42763 * 13 11 10 36 36 H 1.08997 * 109.59193 * 187.97957 * 14 13 11 37 37 H 1.09004 * 109.59346 * 67.53813 * 14 13 11 38 38 H 1.07994 * 120.35234 * 0.02562 * 19 18 16 39 39 H 1.08003 * 119.42813 * 179.97438 * 20 19 18 40 40 H 1.07996 * 119.13806 * 180.02562 * 21 20 19 41 41 H 1.07996 * 126.42656 * 0.03111 * 23 22 21 42 42 H 1.08004 * 125.69674 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.59185 * 184.59276 * 27 15 14 44 44 H 1.08996 * 109.59386 * 64.14703 * 27 15 14 45 45 H 1.08999 * 109.52576 * 289.56577 * 28 11 10 46 46 H 1.08997 * 109.52805 * 49.70349 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0890 -2.7938 0.0067 11 6 0.3456 -4.0902 0.6916 12 6 1.6817 -3.8159 -0.0005 13 6 0.4040 -4.0018 2.2135 14 6 1.0905 -5.2578 2.7639 15 7 0.4245 -6.4425 2.2068 16 6 -0.0824 -7.3883 3.0223 17 8 -0.7242 -8.3114 2.5581 18 6 0.1406 -7.3040 4.4752 19 6 1.4244 -7.1860 4.9934 20 6 1.5984 -7.1091 6.3778 21 6 0.5411 -7.1470 7.2182 22 7 -0.7352 -7.2617 6.7582 23 6 -1.9483 -7.3211 7.3920 24 6 -2.8925 -7.4341 6.4343 25 7 -2.2901 -7.4457 5.2403 26 6 -0.9860 -7.3362 5.4118 27 6 0.3181 -6.5819 0.7484 28 6 -0.3743 -5.3355 0.1834 29 1 -0.4849 0.8400 0.0004 30 1 -0.7190 -2.1618 0.6326 31 1 -0.5022 -2.9466 -0.9904 32 1 1.7498 -4.2467 -0.9996 33 1 2.5477 -4.0478 0.6193 34 1 0.9720 -3.1185 2.5057 35 1 -0.6076 -3.9346 2.6137 36 1 1.0110 -5.2712 3.8509 37 1 2.1408 -5.2580 2.4720 38 1 2.2786 -7.1542 4.3334 39 1 2.5954 -7.0178 6.7830 40 1 0.7129 -7.0846 8.2826 41 1 -2.1174 -7.2835 8.4579 42 1 -3.9569 -7.5036 6.6039 43 1 -0.2702 -7.4674 0.5078 44 1 1.3145 -6.6739 0.3163 45 1 -1.4133 -5.3154 0.5123 46 1 -0.3372 -5.3589 -0.9056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035817950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 130.174730 kcal Electronic energy + Delta-G solvation = -29759.893934 eV Core-core repulsion = 25846.345051 eV Total energy + Delta-G solvation = -3913.548883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.93465 -40.33918 -38.78742 -37.42058 -35.72109 -33.87912 -32.47608 -31.20470 -30.48922 -30.24949 -29.01567 -26.96158 -25.23083 -24.70531 -23.33952 -23.27634 -22.79468 -22.11525 -21.22649 -19.86995 -18.32345 -17.69394 -17.17044 -16.67436 -16.39003 -16.21093 -15.83604 -15.77331 -14.92903 -14.85271 -14.57694 -14.33979 -13.98108 -13.80817 -13.75076 -13.57808 -13.14512 -12.79154 -12.60381 -12.44539 -12.24941 -12.13384 -12.06897 -11.64442 -11.16613 -11.06872 -10.95807 -10.85930 -10.79667 -10.38660 -10.26904 -10.21110 -9.78922 -9.71016 -9.56770 -9.17933 -9.08217 -8.79623 -8.41021 -8.13713 -6.84944 -5.75497 -3.07443 0.15520 1.00189 2.16896 2.56793 2.71344 2.99734 3.33562 3.38033 3.43163 3.46035 3.85074 4.05825 4.33016 4.41732 4.46018 4.56380 4.91746 5.02198 5.08040 5.13594 5.19592 5.22506 5.37110 5.40411 5.45349 5.48909 5.57316 5.64168 5.66377 5.69302 5.86082 5.90668 6.03989 6.06310 6.20350 6.31887 6.37401 6.40160 6.53315 6.63100 6.66303 6.73471 6.83950 6.86646 7.25418 7.38670 7.45293 7.59519 7.69760 7.99281 8.18304 9.05023 9.71762 10.67346 11.41888 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.002930 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.863062 B = 9554.448463 C =10157.340005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.166 3.834 11 C -0.115 4.115 12 C 0.128 3.872 13 C -0.094 4.094 14 C 0.105 3.895 15 N -0.597 5.597 16 C 0.571 3.429 17 O -0.522 6.522 18 C -0.077 4.077 19 C -0.064 4.064 20 C -0.150 4.150 21 C 0.075 3.925 22 N -0.370 5.370 23 C -0.098 4.098 24 C 0.031 3.969 25 N -0.474 5.474 26 C 0.250 3.750 27 C 0.117 3.883 28 C -0.114 4.114 29 H 0.252 0.748 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.031 0.969 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.183 0.817 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -16.209 16.131 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.334 5.334 10 C 0.041 3.959 11 C -0.116 4.116 12 C 0.002 3.998 13 C -0.132 4.132 14 C -0.018 4.018 15 N -0.330 5.330 16 C 0.357 3.643 17 O -0.399 6.399 18 C -0.083 4.083 19 C -0.088 4.088 20 C -0.170 4.170 21 C -0.048 4.048 22 N -0.043 5.043 23 C -0.228 4.228 24 C -0.119 4.119 25 N -0.192 5.192 26 C 0.004 3.996 27 C -0.005 4.005 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.202 0.798 42 H 0.200 0.800 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.489 -16.386 15.180 22.387 hybrid contribution 0.805 1.194 0.795 1.645 sum 2.294 -15.192 15.976 22.165 Atomic orbital electron populations 1.69842 1.04970 1.25129 1.56597 1.24780 0.95635 0.97413 1.02657 0.86082 0.78710 0.83926 0.77261 1.20502 1.21811 1.21758 1.18954 0.90058 0.81548 1.43748 0.90231 1.45574 1.02697 0.99191 1.85939 1.22035 0.88714 0.88960 0.96230 1.22069 0.98750 0.95834 0.94967 1.22392 0.94403 0.86757 0.96280 1.21401 1.00894 0.96681 0.94187 1.21987 0.96733 0.84733 0.98327 1.48008 1.57056 1.20945 1.06945 1.17584 0.79222 0.82661 0.84827 1.90819 1.38595 1.34191 1.76254 1.20101 0.90176 1.05191 0.92840 1.21606 0.95743 0.95752 0.95651 1.20631 0.99042 1.04551 0.92823 1.21636 0.81560 1.00746 1.00814 1.42874 1.06250 1.46264 1.08867 1.22687 0.82252 1.17731 1.00100 1.22652 1.00137 1.01760 0.87336 1.70723 1.01723 1.20834 1.25960 1.21536 0.92153 1.04805 0.81131 1.21663 1.01193 0.99560 0.78047 1.21732 0.99669 0.93521 1.00401 0.93755 0.91238 0.95808 0.95175 0.94601 0.89319 0.92101 0.90318 0.90871 0.83112 0.82496 0.81785 0.79776 0.80015 0.89248 0.91209 0.91644 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 11.52 55.49 0.64 -26.51 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.22 -5.93 10.74 -15.06 -0.16 -6.09 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.19 3.55 -184.68 -0.66 -15.84 16 10 C 0.17 3.87 6.54 -8.22 -0.05 3.81 16 11 C -0.11 -2.07 0.84 -155.03 -0.13 -2.20 16 12 C 0.13 2.50 7.62 -8.22 -0.06 2.44 16 13 C -0.09 -1.57 5.27 -26.78 -0.14 -1.71 16 14 C 0.10 1.38 5.54 -3.65 -0.02 1.36 16 15 N -0.60 -8.50 2.94 -173.96 -0.51 -9.02 16 16 C 0.57 8.99 7.22 -12.61 -0.09 8.90 16 17 O -0.52 -10.04 16.50 5.24 0.09 -9.95 16 18 C -0.08 -1.03 4.79 -102.63 -0.49 -1.52 16 19 C -0.06 -0.58 7.85 -38.76 -0.30 -0.88 16 20 C -0.15 -0.97 9.91 -40.13 -0.40 -1.37 16 21 C 0.08 0.53 10.88 -16.75 -0.18 0.35 16 22 N -0.37 -3.95 2.94 -61.10 -0.18 -4.13 16 23 C -0.10 -0.91 11.76 -16.41 -0.19 -1.10 16 24 C 0.03 0.36 11.83 -17.88 -0.21 0.15 16 25 N -0.47 -7.60 11.30 -11.32 -0.13 -7.73 16 26 C 0.25 3.61 7.82 -154.13 -1.20 2.41 16 27 C 0.12 1.64 6.35 -3.64 -0.02 1.62 16 28 C -0.11 -1.77 5.30 -26.77 -0.14 -1.91 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.07 1.82 7.11 -51.93 -0.37 1.45 16 31 H 0.02 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 34 H 0.09 1.68 7.95 -51.93 -0.41 1.26 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.93 5.27 -51.93 -0.27 0.66 16 37 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 38 H 0.15 1.06 7.78 -52.49 -0.41 0.65 16 39 H 0.16 0.46 8.06 -52.48 -0.42 0.03 16 40 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.18 1.50 8.06 -52.48 -0.42 1.07 16 43 H 0.09 1.30 6.97 -51.93 -0.36 0.94 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -36.97 372.65 -10.44 -47.41 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.38 Total: -0.66 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.91 Total: 3.92 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.84 Total: -63.23 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.97 -10.44 -47.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035817950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.587 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds