Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48502 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47459 * 300.00503 * 3 2 1 6 6 H 1.48498 * 109.47183 * 60.00552 * 3 2 1 7 7 C 1.38817 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99817 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.47169 * 136.00197 * 359.62149 * 9 7 2 11 11 C 1.52931 * 87.86390 * 206.93011 * 10 9 7 12 12 C 1.47160 * 135.99983 * 180.02562 * 9 7 2 13 13 C 1.52554 * 114.11345 * 87.94639 * 11 10 9 14 14 C 1.53355 * 109.13054 * 190.31971 * 13 11 10 15 15 N 1.46883 * 108.75271 * 307.76160 * 14 13 11 16 16 C 1.34781 * 120.46590 * 235.64800 * 15 14 13 17 17 O 1.21637 * 120.00395 * 174.17289 * 16 15 14 18 18 C 1.47230 * 119.99624 * 354.17668 * 16 15 14 19 19 C 1.38946 * 120.85812 * 306.07748 * 18 16 15 20 20 C 1.39738 * 119.29157 * 180.02562 * 19 18 16 21 21 C 1.35117 * 121.14412 * 359.97438 * 20 19 18 22 22 N 1.36146 * 121.72022 * 0.02960 * 21 20 19 23 23 C 1.36996 * 132.64155 * 179.97438 * 22 21 20 24 24 C 1.34960 * 107.15136 * 179.97438 * 23 22 21 25 25 N 1.33746 * 108.60525 * 0.02562 * 24 23 22 26 26 C 1.31984 * 109.16784 * 359.69077 * 25 24 23 27 27 C 1.46891 * 119.07513 * 55.62305 * 15 14 13 28 28 C 1.52557 * 114.12466 * 220.62272 * 11 10 9 29 29 H 0.96991 * 119.99637 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.49004 * 321.67997 * 10 9 7 31 31 H 1.09007 * 113.48435 * 92.18126 * 10 9 7 32 32 H 1.09006 * 113.48714 * 267.81905 * 12 9 7 33 33 H 1.08996 * 113.49184 * 38.32373 * 12 9 7 34 34 H 1.09000 * 109.53399 * 310.21496 * 13 11 10 35 35 H 1.08999 * 109.53041 * 70.42763 * 13 11 10 36 36 H 1.08997 * 109.59193 * 187.97957 * 14 13 11 37 37 H 1.09004 * 109.59346 * 67.53813 * 14 13 11 38 38 H 1.07994 * 120.35234 * 0.02562 * 19 18 16 39 39 H 1.08003 * 119.42813 * 179.97438 * 20 19 18 40 40 H 1.07996 * 119.13806 * 180.02562 * 21 20 19 41 41 H 1.07996 * 126.42656 * 0.03111 * 23 22 21 42 42 H 1.08004 * 125.69674 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.59185 * 184.59276 * 27 15 14 44 44 H 1.08996 * 109.59386 * 64.14703 * 27 15 14 45 45 H 1.08999 * 109.52576 * 289.56577 * 28 11 10 46 46 H 1.08997 * 109.52805 * 49.70349 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0890 -2.7938 0.0067 11 6 0.3456 -4.0902 0.6916 12 6 1.6817 -3.8159 -0.0005 13 6 0.4040 -4.0018 2.2135 14 6 1.0905 -5.2578 2.7639 15 7 0.4245 -6.4425 2.2068 16 6 -0.0824 -7.3883 3.0223 17 8 -0.7242 -8.3114 2.5581 18 6 0.1406 -7.3040 4.4752 19 6 1.4244 -7.1860 4.9934 20 6 1.5984 -7.1091 6.3778 21 6 0.5411 -7.1470 7.2182 22 7 -0.7352 -7.2617 6.7582 23 6 -1.9483 -7.3211 7.3920 24 6 -2.8925 -7.4341 6.4343 25 7 -2.2901 -7.4457 5.2403 26 6 -0.9860 -7.3362 5.4118 27 6 0.3181 -6.5819 0.7484 28 6 -0.3743 -5.3355 0.1834 29 1 -0.4849 0.8400 0.0004 30 1 -0.7190 -2.1618 0.6326 31 1 -0.5022 -2.9466 -0.9904 32 1 1.7498 -4.2467 -0.9996 33 1 2.5477 -4.0478 0.6193 34 1 0.9720 -3.1185 2.5057 35 1 -0.6076 -3.9346 2.6137 36 1 1.0110 -5.2712 3.8509 37 1 2.1408 -5.2580 2.4720 38 1 2.2786 -7.1542 4.3334 39 1 2.5954 -7.0178 6.7830 40 1 0.7129 -7.0846 8.2826 41 1 -2.1174 -7.2835 8.4579 42 1 -3.9569 -7.5036 6.6039 43 1 -0.2702 -7.4674 0.5078 44 1 1.3145 -6.6739 0.3163 45 1 -1.4133 -5.3154 0.5123 46 1 -0.3372 -5.3589 -0.9056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035817950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = 106.637458 kcal Electronic energy + Delta-G solvation = -29760.914586 eV Core-core repulsion = 25846.345051 eV Total energy + Delta-G solvation = -3914.569535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.68553 -41.64848 -40.20997 -38.14556 -37.10021 -34.79626 -34.30459 -32.43659 -31.88975 -31.14085 -29.84517 -28.70884 -26.64574 -26.03983 -24.65628 -24.46598 -23.58822 -23.20363 -22.57897 -21.01704 -19.42311 -18.67928 -18.50288 -18.28657 -17.35699 -17.10471 -16.86969 -16.76474 -16.46600 -16.12200 -15.97490 -15.61720 -15.17908 -14.99711 -14.97427 -14.59961 -14.32338 -14.16220 -13.75986 -13.67860 -13.48041 -13.12512 -13.07046 -12.91530 -12.85881 -12.82075 -12.61658 -12.18546 -12.11230 -11.95270 -11.66035 -11.64023 -11.15982 -11.15183 -10.93315 -10.88612 -10.79558 -9.81988 -9.63925 -8.89214 -8.86887 -7.87292 -5.20168 -0.54166 0.31326 1.32322 1.46398 1.47627 1.57755 1.72862 1.94749 2.00349 2.47938 2.49404 3.13247 3.29483 3.34418 3.46986 3.58904 3.70328 3.83678 3.85528 3.93894 4.08553 4.13945 4.31944 4.35640 4.37587 4.49228 4.54828 4.58284 4.67280 4.74811 4.78241 4.84239 4.85761 4.91597 4.96035 5.06300 5.07689 5.14096 5.19953 5.29524 5.34041 5.44495 5.52697 5.58277 5.61956 5.73385 5.95383 6.08590 6.32551 6.91397 6.93059 7.05926 7.63987 8.66073 9.30633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.002930 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.863062 B = 9554.448463 C =10157.340005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.220 4.220 8 H 0.089 0.911 9 N -0.636 5.636 10 C 0.159 3.841 11 C -0.088 4.088 12 C 0.135 3.865 13 C -0.089 4.089 14 C 0.118 3.882 15 N -0.596 5.596 16 C 0.571 3.429 17 O -0.572 6.572 18 C -0.134 4.134 19 C -0.033 4.033 20 C -0.150 4.150 21 C 0.082 3.918 22 N -0.374 5.374 23 C -0.079 4.079 24 C -0.003 4.003 25 N -0.543 5.543 26 C 0.221 3.779 27 C 0.121 3.879 28 C -0.107 4.107 29 H 0.245 0.755 30 H 0.029 0.971 31 H 0.010 0.990 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.205 0.795 40 H 0.213 0.787 41 H 0.231 0.769 42 H 0.199 0.801 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -17.131 18.977 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.348 4.348 8 H 0.107 0.893 9 N -0.361 5.361 10 C 0.033 3.967 11 C -0.089 4.089 12 C 0.010 3.990 13 C -0.127 4.127 14 C -0.004 4.004 15 N -0.327 5.327 16 C 0.360 3.640 17 O -0.451 6.451 18 C -0.140 4.140 19 C -0.057 4.057 20 C -0.171 4.171 21 C -0.040 4.040 22 N -0.047 5.047 23 C -0.208 4.208 24 C -0.151 4.151 25 N -0.263 5.263 26 C -0.026 4.026 27 C -0.001 4.001 28 C -0.146 4.146 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.192 0.808 39 H 0.222 0.778 40 H 0.230 0.770 41 H 0.248 0.752 42 H 0.215 0.785 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.215 -17.329 18.043 25.555 hybrid contribution -0.325 1.458 -0.009 1.493 sum 4.890 -15.871 18.035 24.516 Atomic orbital electron populations 1.70058 1.06639 1.25256 1.58618 1.25634 0.96428 1.00900 1.03429 0.85020 0.78439 0.79511 0.76453 1.18423 1.22535 1.22058 1.19393 0.90755 0.82725 1.41916 0.89285 1.45899 1.03510 1.00809 1.85919 1.22010 0.87935 0.91323 0.95408 1.21840 0.97598 0.94076 0.95426 1.22519 0.95618 0.83507 0.97375 1.21308 1.00094 0.98069 0.93274 1.21966 0.97163 0.82073 0.99220 1.48061 1.56833 1.20910 1.06918 1.18039 0.77971 0.81875 0.86157 1.90770 1.40747 1.36172 1.77454 1.19964 0.91816 1.11061 0.91188 1.22085 0.94465 0.91580 0.97577 1.21221 1.01091 1.03369 0.91375 1.22629 0.80054 0.97931 1.03373 1.43146 1.07905 1.45985 1.07665 1.23352 0.81195 1.14842 1.01447 1.23133 1.01712 1.03117 0.87104 1.70597 1.03615 1.23400 1.28671 1.21692 0.91976 1.05819 0.83086 1.21649 1.02221 0.97941 0.78275 1.21662 0.98668 0.93174 1.01103 0.94610 0.95264 0.97262 0.93808 0.92166 0.91383 0.93940 0.88553 0.88153 0.80789 0.77808 0.77034 0.75226 0.78450 0.89952 0.88518 0.93231 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.80 11.52 21.65 0.25 -58.55 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.22 -12.08 10.74 84.04 0.90 -11.18 16 8 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 9 N -0.64 -31.92 3.55 -738.20 -2.62 -34.55 16 10 C 0.16 7.73 6.54 83.31 0.55 8.28 16 11 C -0.09 -3.18 0.84 -52.52 -0.04 -3.22 16 12 C 0.13 5.04 7.62 83.31 0.64 5.67 16 13 C -0.09 -3.00 5.27 30.57 0.16 -2.83 16 14 C 0.12 2.85 5.54 86.43 0.48 3.33 16 15 N -0.60 -16.45 2.94 -822.54 -2.42 -18.86 16 16 C 0.57 18.18 7.22 86.61 0.63 18.81 16 17 O -0.57 -23.03 16.50 -4.15 -0.07 -23.10 16 18 C -0.13 -3.49 4.79 -18.58 -0.09 -3.58 16 19 C -0.03 -0.49 7.85 22.80 0.18 -0.31 16 20 C -0.15 -1.16 9.91 21.91 0.22 -0.94 16 21 C 0.08 0.76 10.88 83.30 0.91 1.67 16 22 N -0.37 -7.12 2.94 -347.21 -1.02 -8.15 16 23 C -0.08 -1.30 11.76 83.13 0.98 -0.33 16 24 C 0.00 -0.06 11.83 83.65 0.99 0.93 16 25 N -0.54 -18.38 11.30 -189.72 -2.14 -20.53 16 26 C 0.22 6.41 7.82 135.76 1.06 7.47 16 27 C 0.12 3.27 6.35 86.43 0.55 3.82 16 28 C -0.11 -3.33 5.30 30.57 0.16 -3.17 16 29 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.03 1.63 7.11 -2.39 -0.02 1.61 16 31 H 0.01 0.48 8.10 -2.38 -0.02 0.46 16 32 H 0.04 1.57 8.06 -2.38 -0.02 1.55 16 33 H 0.06 1.99 7.53 -2.39 -0.02 1.97 16 34 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 2.05 5.27 -2.39 -0.01 2.03 16 37 H 0.10 1.96 7.60 -2.38 -0.02 1.94 16 38 H 0.17 1.63 7.78 -2.91 -0.02 1.60 16 39 H 0.21 -0.33 8.06 -2.91 -0.02 -0.35 16 40 H 0.21 -0.12 8.06 -2.91 -0.02 -0.15 16 41 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.20 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.08 2.41 6.97 -2.39 -0.02 2.39 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -89.19 372.65 3.72 -85.47 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.99 Total: 9.89 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 8.72 Total: 20.81 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -7.96 Total: -140.63 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -89.19 3.72 -85.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035817950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.109 kcal (2) G-P(sol) polarization free energy of solvation -89.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds