Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47530 * 300.00592 * 3 2 1 6 6 H 1.48502 * 109.46913 * 60.00678 * 3 2 1 7 7 C 1.38807 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.47667 * 134.46120 * 180.02562 * 9 7 2 11 11 C 1.53512 * 85.97859 * 204.27347 * 10 9 7 12 12 C 1.47672 * 134.45105 * 359.94971 * 9 7 2 13 13 C 1.52674 * 113.56871 * 91.01350 * 11 10 9 14 14 C 1.53342 * 109.10819 * 73.81388 * 13 11 10 15 15 N 1.46874 * 108.76323 * 52.39969 * 14 13 11 16 16 C 1.34780 * 120.46180 * 124.47578 * 15 14 13 17 17 O 1.21592 * 120.00222 * 4.12160 * 16 15 14 18 18 C 1.47532 * 119.99835 * 184.11773 * 16 15 14 19 19 C 1.39430 * 120.25109 * 305.31381 * 18 16 15 20 20 C 1.38286 * 120.28360 * 180.23516 * 19 18 16 21 21 C 1.37881 * 120.72484 * 0.05912 * 20 19 18 22 22 C 1.39678 * 120.10868 * 359.95856 * 21 20 19 23 23 N 1.35861 * 133.51332 * 179.97438 * 22 21 20 24 24 C 1.30084 * 109.53533 * 180.02562 * 23 22 21 25 25 N 1.36124 * 110.05234 * 0.02562 * 24 23 22 26 26 H 0.96997 * 126.30889 * 179.97438 * 25 24 23 27 27 C 1.37508 * 107.38010 * 359.97438 * 25 24 23 28 28 C 1.46877 * 119.07399 * 304.74250 * 15 14 13 29 29 C 1.52671 * 113.56208 * 222.23218 * 11 10 9 30 30 H 0.97000 * 119.99654 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.79252 * 90.01008 * 10 9 7 32 32 H 1.08994 * 113.78829 * 318.54222 * 10 9 7 33 33 H 1.08995 * 113.79156 * 41.45356 * 12 9 7 34 34 H 1.09001 * 113.79076 * 269.98710 * 12 9 7 35 35 H 1.08999 * 109.53341 * 313.92048 * 13 11 10 36 36 H 1.09007 * 109.59061 * 193.73238 * 13 11 10 37 37 H 1.09004 * 109.58499 * 292.61183 * 14 13 11 38 38 H 1.09004 * 109.58546 * 172.18828 * 14 13 11 39 39 H 1.07993 * 119.85941 * 0.25398 * 19 18 16 40 40 H 1.07999 * 119.63706 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.94549 * 179.97438 * 21 20 19 42 42 H 1.07998 * 124.97398 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.59331 * 175.04059 * 28 15 14 44 44 H 1.08999 * 109.59340 * 295.48586 * 28 15 14 45 45 H 1.09000 * 109.53045 * 46.07888 * 29 11 10 46 46 H 1.08997 * 109.53053 * 166.23318 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7212 -3.8108 -0.0005 11 6 0.3474 -4.0810 -0.6301 12 6 -0.1044 -2.7566 0.0009 13 6 0.3603 -4.0586 -2.1566 14 6 1.0368 -5.3347 -2.6716 15 7 0.3913 -6.4968 -2.0469 16 6 -0.1312 -7.4791 -2.8076 17 8 -0.0044 -7.4446 -4.0164 18 6 -0.8569 -8.5961 -2.1735 19 6 -0.2481 -9.3506 -1.1714 20 6 -0.9259 -10.4008 -0.5800 21 6 -2.2094 -10.7196 -0.9700 22 6 -2.8415 -9.9796 -1.9719 23 7 -4.0663 -10.0503 -2.5556 24 6 -4.1739 -9.1171 -3.4554 25 7 -3.0266 -8.3865 -3.5096 26 1 -2.8517 -7.6346 -4.0969 27 6 -2.1614 -8.9108 -2.5783 28 6 0.3179 -6.5705 -0.5819 29 6 -0.3582 -5.3057 -0.0528 30 1 -0.4849 0.8401 0.0004 31 1 1.8388 -4.2344 0.9968 32 1 2.5591 -4.0341 -0.6608 33 1 -0.7175 -2.1421 -0.6583 34 1 -0.5290 -2.8672 0.9987 35 1 0.9148 -3.1867 -2.5036 36 1 -0.6627 -4.0124 -2.5301 37 1 2.0946 -5.3191 -2.4089 38 1 0.9280 -5.3944 -3.7546 39 1 0.7571 -9.1135 -0.8555 40 1 -0.4444 -10.9780 0.1955 41 1 -2.7269 -11.5428 -0.4999 42 1 -5.0455 -8.9474 -4.0700 43 1 -0.2644 -7.4440 -0.2886 44 1 1.3239 -6.6436 -0.1687 45 1 -0.2938 -5.2842 1.0351 46 1 -1.4051 -5.2998 -0.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035821682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 100.665335 kcal Electronic energy + Delta-G solvation = -29730.217458 eV Core-core repulsion = 25815.388952 eV Total energy + Delta-G solvation = -3914.828506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.44511 -40.42117 -38.81255 -37.29319 -35.81150 -33.46239 -32.53431 -31.41416 -30.70266 -29.95433 -29.59206 -26.93691 -25.16053 -24.58520 -23.53437 -23.16019 -22.51386 -22.06097 -21.14907 -19.89135 -18.34629 -17.91300 -17.26574 -16.74763 -16.52759 -16.08666 -15.62967 -15.45701 -15.05607 -14.88597 -14.69347 -14.49040 -13.96960 -13.84219 -13.78921 -13.65063 -13.10813 -12.68589 -12.42798 -12.28650 -12.19406 -12.15476 -11.89421 -11.72751 -11.14229 -11.08651 -11.00307 -10.90605 -10.86697 -10.59619 -10.35935 -10.21019 -9.89313 -9.74342 -9.56182 -9.38335 -8.81371 -8.72619 -8.57365 -8.36874 -6.87936 -5.78249 -3.10020 0.43477 1.19901 2.29546 2.62674 2.70413 2.98728 3.36746 3.42397 3.44721 3.54686 3.94781 4.22546 4.43863 4.54439 4.67490 4.90810 4.94407 4.99279 5.01424 5.11469 5.18860 5.26043 5.29802 5.40978 5.45215 5.51379 5.63409 5.66377 5.81669 5.86133 5.90544 5.96607 6.08098 6.12495 6.15510 6.22704 6.27841 6.37770 6.47728 6.55895 6.60068 6.76304 6.81195 7.01578 7.21346 7.34349 7.35580 7.52970 7.56407 7.97266 8.02588 9.03666 9.69884 10.59755 11.38699 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.002614 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.072509 B =10710.819306 C =10892.580452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.127 3.873 11 C -0.110 4.110 12 C 0.173 3.827 13 C -0.095 4.095 14 C 0.112 3.888 15 N -0.593 5.593 16 C 0.557 3.443 17 O -0.547 6.547 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.133 4.133 21 C -0.045 4.045 22 C 0.040 3.960 23 N -0.495 5.495 24 C 0.265 3.735 25 N -0.593 5.593 26 H 0.429 0.571 27 C 0.090 3.910 28 C 0.099 3.901 29 C -0.118 4.118 30 H 0.252 0.748 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.219 0.781 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -20.917 -3.279 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.133 4.133 14 C -0.009 4.009 15 N -0.324 5.324 16 C 0.345 3.655 17 O -0.426 6.426 18 C -0.121 4.121 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.064 4.064 22 C -0.078 4.078 23 N -0.215 5.215 24 C -0.022 4.022 25 N -0.204 5.204 26 H 0.269 0.731 27 C -0.023 4.023 28 C -0.023 4.023 29 C -0.157 4.157 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.235 0.765 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.601 -21.153 -3.666 22.187 hybrid contribution 1.050 2.074 -0.259 2.339 sum -4.552 -19.079 -3.925 20.003 Atomic orbital electron populations 1.69828 1.04973 1.25119 1.56887 1.24759 0.95639 0.97437 1.02629 0.86088 0.78761 0.83915 0.77252 1.20510 1.21753 1.21806 1.19057 0.90239 0.82080 1.43479 0.90354 1.45971 1.02321 0.99180 1.86004 1.22586 0.94300 0.86637 0.96408 1.22401 0.98066 0.95605 0.95012 1.22230 0.88111 0.88323 0.96542 1.21484 1.00757 0.96773 0.94318 1.21762 0.96542 0.84032 0.98593 1.48080 1.56332 1.20721 1.07264 1.18295 0.78668 0.82030 0.86548 1.90782 1.60118 1.77785 1.13896 1.18749 0.92382 1.00013 1.00926 1.21117 0.99910 0.94484 0.93371 1.20834 0.94482 0.98435 1.01615 1.20428 0.94014 0.98065 0.93940 1.19036 0.91569 0.97014 1.00170 1.70527 1.18048 1.22354 1.10552 1.25449 0.90492 0.88791 0.97472 1.43170 1.13409 1.30621 1.33161 0.73145 1.18540 0.92272 0.97348 0.94160 1.21983 1.01755 0.99763 0.78846 1.21737 0.99496 0.93823 1.00608 0.93774 0.95098 0.94153 0.91050 0.95745 0.89309 0.92322 0.91084 0.89377 0.84462 0.84478 0.84851 0.76473 0.89338 0.90834 0.90507 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.06 10.70 -15.06 -0.16 -6.22 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -14.97 3.53 -179.75 -0.64 -15.60 16 10 C 0.13 2.41 7.72 -3.15 -0.02 2.39 16 11 C -0.11 -1.88 0.77 -154.41 -0.12 -2.00 16 12 C 0.17 3.90 6.64 -3.15 -0.02 3.88 16 13 C -0.10 -1.56 5.22 -26.72 -0.14 -1.70 16 14 C 0.11 1.60 6.29 -3.66 -0.02 1.57 16 15 N -0.59 -7.76 2.95 -174.18 -0.51 -8.27 16 16 C 0.56 7.73 7.19 -12.47 -0.09 7.64 16 17 O -0.55 -9.15 16.48 5.28 0.09 -9.06 16 18 C -0.11 -1.37 4.88 -104.94 -0.51 -1.89 16 19 C -0.07 -0.65 7.41 -39.12 -0.29 -0.94 16 20 C -0.13 -1.07 9.99 -39.69 -0.40 -1.47 16 21 C -0.04 -0.43 10.09 -39.17 -0.40 -0.82 16 22 C 0.04 0.48 7.22 -84.71 -0.61 -0.14 16 23 N -0.50 -5.78 11.28 -12.05 -0.14 -5.92 16 24 C 0.27 2.31 12.97 -89.72 -1.16 1.15 16 25 N -0.59 -5.97 6.21 -11.56 -0.07 -6.04 16 26 H 0.43 3.79 8.96 -40.82 -0.37 3.43 16 27 C 0.09 1.09 7.01 -83.77 -0.59 0.50 16 28 C 0.10 1.12 5.43 -3.91 -0.02 1.10 16 29 C -0.12 -1.60 5.24 -26.97 -0.14 -1.74 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.04 0.74 7.41 -51.93 -0.38 0.35 16 33 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 34 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.09 1.68 8.01 -51.93 -0.42 1.27 16 36 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 38 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 39 H 0.14 1.04 7.38 -52.49 -0.39 0.66 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.09 0.87 4.65 -51.93 -0.24 0.63 16 44 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 45 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -34.75 369.98 -11.14 -45.89 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.26 Total: 1.78 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -4.79 Total: 1.00 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.72 Total: -62.10 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.75 -11.14 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035821682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.555 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds