Wall clock time and date at job start Sat Apr 11 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99828 * 2 1 4 4 H 1.48501 * 109.46677 * 269.99652 * 3 2 1 5 5 H 1.48506 * 109.46933 * 29.99483 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99527 * 3 2 1 7 7 C 1.38813 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00000 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.47665 * 134.45499 * 179.97438 * 9 7 2 11 11 C 1.53515 * 85.97902 * 204.28297 * 10 9 7 12 12 C 1.47668 * 134.45922 * 359.95104 * 9 7 2 13 13 C 1.52672 * 113.57350 * 91.01879 * 11 10 9 14 14 C 1.53334 * 109.11292 * 73.81057 * 13 11 10 15 15 N 1.46883 * 108.76015 * 52.40160 * 14 13 11 16 16 C 1.34777 * 120.46177 * 124.47997 * 15 14 13 17 17 O 1.21589 * 120.00260 * 3.76240 * 16 15 14 18 18 C 1.47576 * 119.99916 * 183.77204 * 16 15 14 19 19 C 1.41756 * 120.01064 * 308.51268 * 18 16 15 20 20 C 1.35628 * 119.53996 * 180.02562 * 19 18 16 21 21 C 1.41179 * 119.50682 * 0.02562 * 20 19 18 22 22 N 1.32414 * 132.11412 * 180.26650 * 21 20 19 23 23 C 1.33592 * 109.22517 * 180.12682 * 22 21 20 24 24 C 1.35002 * 108.65695 * 359.62033 * 23 22 21 25 25 N 1.37010 * 107.14441 * 0.22936 * 24 23 22 26 26 C 1.35919 * 132.42097 * 179.97438 * 25 24 23 27 27 C 1.46880 * 119.07316 * 304.74637 * 15 14 13 28 28 C 1.52673 * 113.56275 * 222.23498 * 11 10 9 29 29 H 0.96992 * 120.00288 * 0.02562 * 1 2 3 30 30 H 1.08997 * 113.79316 * 90.01666 * 10 9 7 31 31 H 1.09003 * 113.79276 * 318.54648 * 10 9 7 32 32 H 1.08999 * 113.78829 * 41.44325 * 12 9 7 33 33 H 1.09000 * 113.78863 * 269.97978 * 12 9 7 34 34 H 1.09002 * 109.53103 * 313.91568 * 13 11 10 35 35 H 1.09003 * 109.58716 * 193.73429 * 13 11 10 36 36 H 1.09002 * 109.58602 * 292.62110 * 14 13 11 37 37 H 1.08994 * 109.58930 * 172.18577 * 14 13 11 38 38 H 1.07999 * 120.23351 * 0.04761 * 19 18 16 39 39 H 1.08001 * 120.24710 * 179.97438 * 20 19 18 40 40 H 1.07997 * 125.67558 * 179.89006 * 23 22 21 41 41 H 1.07997 * 126.43116 * 180.20632 * 24 23 22 42 42 H 1.07993 * 119.75626 * 0.02562 * 26 25 24 43 43 H 1.08999 * 109.58831 * 175.04213 * 27 15 14 44 44 H 1.09003 * 109.58618 * 295.47474 * 27 15 14 45 45 H 1.09007 * 109.52812 * 46.07341 * 28 11 10 46 46 H 1.08997 * 109.53667 * 166.22241 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7214 -3.8107 0.0005 11 6 0.3477 -4.0811 -0.6292 12 6 -0.1043 -2.7568 0.0010 13 6 0.3608 -4.0587 -2.1557 14 6 1.0374 -5.3347 -2.6707 15 7 0.3918 -6.4968 -2.0460 16 6 -0.1305 -7.4792 -2.8067 17 8 -0.0092 -7.4414 -4.0160 18 6 -0.8498 -8.6006 -2.1720 19 6 -0.2451 -9.3213 -1.1117 20 6 -0.9146 -10.3506 -0.5355 21 6 -2.2037 -10.6890 -1.0011 22 7 -3.0659 -11.6222 -0.6281 23 6 -4.1614 -11.5379 -1.3880 24 6 -4.0028 -10.5224 -2.2633 25 7 -2.7680 -9.9766 -2.0293 26 6 -2.0971 -8.9451 -2.6066 27 6 0.3182 -6.5705 -0.5809 28 6 -0.3579 -5.3057 -0.0520 29 1 -0.4850 0.8400 -0.0004 30 1 1.8389 -4.2344 0.9979 31 1 2.5594 -4.0340 -0.6597 32 1 -0.7169 -2.1424 -0.6588 33 1 -0.5296 -2.8671 0.9985 34 1 0.9152 -3.1867 -2.5027 35 1 -0.6622 -4.0125 -2.5293 36 1 2.0951 -5.3190 -2.4078 37 1 0.9286 -5.3945 -3.7536 38 1 0.7417 -9.0526 -0.7647 39 1 -0.4645 -10.9077 0.2729 40 1 -5.0313 -12.1733 -1.3117 41 1 -4.7152 -10.2008 -3.0085 42 1 -2.5544 -8.3939 -3.4149 43 1 -0.2640 -7.4441 -0.2878 44 1 1.3242 -6.6437 -0.1678 45 1 -0.2936 -5.2843 1.0359 46 1 -1.4048 -5.2999 -0.3554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035833133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:17 Heat of formation + Delta-G solvation = 125.399829 kcal Electronic energy + Delta-G solvation = -29404.270791 eV Core-core repulsion = 25490.514854 eV Total energy + Delta-G solvation = -3913.755938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -43.16286 -40.62524 -38.97479 -37.26846 -35.92178 -34.09469 -32.56694 -31.59956 -30.79970 -30.08583 -29.15222 -26.96468 -25.21347 -24.83250 -23.98571 -23.15941 -22.88701 -22.08987 -21.34114 -19.97087 -18.56454 -17.86872 -17.21905 -16.76059 -16.44999 -16.40872 -16.08213 -15.20775 -15.05487 -14.93385 -14.88773 -14.68329 -14.25503 -13.91922 -13.81794 -13.74258 -13.22390 -13.16852 -12.66841 -12.44750 -12.20447 -12.17468 -11.98963 -11.75854 -11.38004 -11.12670 -11.08802 -10.91105 -10.87331 -10.49984 -10.40809 -10.27076 -10.10598 -9.75401 -9.60531 -9.40050 -9.19167 -8.81454 -8.58319 -8.24716 -6.88702 -5.78560 -3.10443 0.27169 0.74142 2.03399 2.30828 2.65358 2.90974 3.18758 3.37051 3.42177 3.43928 3.85003 4.05423 4.19885 4.33863 4.43588 4.52994 4.83188 4.93278 4.96271 4.97208 5.08986 5.16523 5.23823 5.26227 5.41236 5.44962 5.47226 5.55345 5.62214 5.65966 5.78208 5.83687 5.87705 6.00484 6.09409 6.20264 6.24259 6.25125 6.34561 6.54177 6.58252 6.60891 6.74888 6.79564 7.20444 7.26732 7.33922 7.48823 7.55789 7.93435 7.96931 9.03269 9.69539 10.59132 11.38367 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025129 B = 0.002385 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.978961 B =11738.788936 C =11969.664512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.110 4.110 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.113 3.887 15 N -0.591 5.591 16 C 0.568 3.432 17 O -0.537 6.537 18 C -0.144 4.144 19 C -0.079 4.079 20 C -0.080 4.080 21 C 0.229 3.771 22 N -0.492 5.492 23 C 0.033 3.967 24 C -0.094 4.094 25 N -0.365 5.365 26 C 0.117 3.883 27 C 0.099 3.901 28 C -0.119 4.119 29 H 0.253 0.747 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -21.273 -3.155 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.323 5.323 16 C 0.355 3.645 17 O -0.415 6.415 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.100 4.100 21 C -0.014 4.014 22 N -0.212 5.212 23 C -0.118 4.118 24 C -0.224 4.224 25 N -0.037 5.037 26 C -0.008 4.008 27 C -0.023 4.023 28 C -0.158 4.158 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.200 0.800 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.127 -21.441 -3.196 22.276 hybrid contribution 0.164 1.628 -0.370 1.677 sum -4.963 -19.814 -3.566 20.735 Atomic orbital electron populations 1.69809 1.04981 1.25276 1.56775 1.24762 0.95636 0.97449 1.02590 0.86161 0.78604 0.83620 0.77613 1.21557 1.21698 1.20748 1.19001 0.90206 0.82074 1.43650 0.90400 1.45956 1.02324 0.99177 1.86029 1.22591 0.94296 0.86669 0.96404 1.22401 0.98054 0.95557 0.95073 1.22223 0.88115 0.88308 0.96552 1.21496 1.00946 0.96760 0.94234 1.21792 0.96510 0.83804 0.98706 1.48025 1.56393 1.20680 1.07197 1.17751 0.78883 0.81549 0.86342 1.90821 1.59618 1.77478 1.13598 1.19360 0.95052 1.00350 1.00288 1.21118 1.00855 0.94305 0.94052 1.20181 0.90158 0.98125 1.01585 1.21149 0.96619 0.92938 0.90743 1.70750 1.02253 1.21062 1.27126 1.22560 0.97752 0.97841 0.93613 1.22796 0.88386 1.02375 1.08863 1.42784 1.13910 1.22027 1.25019 1.21483 0.92601 0.89183 0.97549 1.22018 1.01823 0.99596 0.78864 1.21748 0.99582 0.93763 1.00658 0.93697 0.95123 0.94122 0.91009 0.95758 0.89227 0.92103 0.90968 0.89150 0.83151 0.82463 0.79998 0.79760 0.81119 0.89580 0.90636 0.90476 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 11.39 55.49 0.63 -26.14 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.03 10.70 -15.06 -0.16 -6.19 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -14.78 3.53 -179.77 -0.64 -15.42 16 10 C 0.13 2.35 7.73 -3.15 -0.02 2.33 16 11 C -0.11 -1.81 0.77 -154.43 -0.12 -1.93 16 12 C 0.17 3.84 6.64 -3.17 -0.02 3.82 16 13 C -0.10 -1.52 5.21 -26.73 -0.14 -1.66 16 14 C 0.11 1.52 6.29 -3.66 -0.02 1.50 16 15 N -0.59 -7.11 2.95 -174.17 -0.51 -7.62 16 16 C 0.57 7.13 7.20 -12.45 -0.09 7.04 16 17 O -0.54 -8.47 16.44 5.29 0.09 -8.38 16 18 C -0.14 -1.47 4.93 -105.37 -0.52 -1.99 16 19 C -0.08 -0.66 7.36 -39.17 -0.29 -0.95 16 20 C -0.08 -0.70 10.09 -39.40 -0.40 -1.10 16 21 C 0.23 2.53 7.81 -155.93 -1.22 1.31 16 22 N -0.49 -5.82 11.31 -12.72 -0.14 -5.97 16 23 C 0.03 0.30 11.82 -17.94 -0.21 0.08 16 24 C -0.09 -0.79 11.75 -16.39 -0.19 -0.98 16 25 N -0.37 -3.69 2.93 -62.31 -0.18 -3.87 16 26 C 0.12 1.14 10.59 -16.36 -0.17 0.96 16 27 C 0.10 1.02 5.30 -3.91 -0.02 1.00 16 28 C -0.12 -1.52 5.24 -26.97 -0.14 -1.66 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 31 H 0.04 0.72 7.41 -51.93 -0.38 0.34 16 32 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 33 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.09 1.66 8.01 -51.93 -0.42 1.24 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 37 H 0.09 1.26 6.99 -51.93 -0.36 0.90 16 38 H 0.15 0.95 7.17 -52.49 -0.38 0.57 16 39 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.19 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.09 0.74 4.48 -51.93 -0.23 0.51 16 44 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -34.05 370.05 -10.33 -44.39 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.29 Total: -0.62 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.84 Total: 1.25 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.84 Total: -59.03 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.05 -10.33 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035833133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.789 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds