Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00217 * 2 1 4 4 H 1.48502 * 109.47056 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46946 * 299.99442 * 3 2 1 6 6 H 1.48496 * 109.47417 * 59.99874 * 3 2 1 7 7 C 1.38814 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99817 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.47660 * 134.45926 * 179.97438 * 9 7 2 11 11 C 1.53504 * 85.97977 * 204.31001 * 10 9 7 12 12 C 1.47668 * 134.45525 * 359.97438 * 9 7 2 13 13 C 1.52680 * 113.56927 * 91.02075 * 11 10 9 14 14 C 1.53335 * 109.17196 * 73.76861 * 13 11 10 15 15 N 1.47041 * 108.67746 * 52.37928 * 14 13 11 16 16 C 1.34775 * 120.42863 * 124.47770 * 15 14 13 17 17 O 1.21611 * 120.00294 * 352.96807 * 16 15 14 18 18 C 1.47397 * 119.99924 * 172.97087 * 16 15 14 19 19 N 1.31572 * 126.82058 * 353.35725 * 18 16 15 20 20 N 1.28382 * 111.96260 * 179.80783 * 19 18 16 21 21 H 0.97006 * 124.37258 * 180.19428 * 20 19 18 22 22 C 1.37048 * 111.26078 * 0.47231 * 20 19 18 23 23 C 1.39123 * 134.73246 * 179.72213 * 22 20 19 24 24 C 1.36682 * 119.78397 * 180.02562 * 23 22 20 25 25 C 1.38893 * 120.89689 * 359.97438 * 24 23 22 26 26 C 1.36715 * 120.52172 * 0.02562 * 25 24 23 27 27 C 1.39189 * 119.51260 * 359.97438 * 26 25 24 28 28 C 1.46884 * 119.10234 * 304.50353 * 15 14 13 29 29 C 1.52670 * 113.56600 * 222.22775 * 11 10 9 30 30 H 0.97001 * 119.99497 * 0.02562 * 1 2 3 31 31 H 1.09010 * 113.79134 * 90.04273 * 10 9 7 32 32 H 1.08997 * 113.79168 * 318.58010 * 10 9 7 33 33 H 1.09000 * 113.78824 * 41.42338 * 12 9 7 34 34 H 1.08998 * 113.79529 * 269.95838 * 12 9 7 35 35 H 1.09003 * 109.52950 * 193.69809 * 13 11 10 36 36 H 1.08998 * 109.52680 * 313.84189 * 13 11 10 37 37 H 1.09003 * 109.58790 * 172.23190 * 14 13 11 38 38 H 1.09003 * 109.58466 * 292.65965 * 14 13 11 39 39 H 1.08000 * 120.10498 * 0.02562 * 23 22 20 40 40 H 1.08003 * 119.54785 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.73894 * 179.97438 * 25 24 23 42 42 H 1.08009 * 120.24354 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.58702 * 295.76600 * 28 15 14 44 44 H 1.09000 * 109.71487 * 175.39912 * 28 15 14 45 45 H 1.09009 * 109.52880 * 46.09157 * 29 11 10 46 46 H 1.08994 * 109.53857 * 166.23876 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7211 -3.8107 0.0005 11 6 0.3478 -4.0809 -0.6298 12 6 -0.1044 -2.7567 0.0005 13 6 0.3617 -4.0584 -2.1564 14 6 1.0391 -5.3334 -2.6727 15 7 0.3926 -6.4965 -2.0471 16 6 -0.1299 -7.4784 -2.8082 17 8 -0.1839 -7.3480 -4.0161 18 6 -0.6361 -8.7102 -2.1765 19 7 -0.5355 -9.0446 -0.9080 20 7 -1.0812 -10.1813 -0.6664 21 1 -1.1131 -10.5985 0.2088 22 6 -1.6074 -10.7322 -1.8056 23 6 -2.2822 -11.9123 -2.1012 24 6 -2.6822 -12.1628 -3.3839 25 6 -2.4248 -11.2533 -4.4017 26 6 -1.7635 -10.0859 -4.1388 27 6 -1.3474 -9.8112 -2.8393 28 6 0.3237 -6.5733 -0.5818 29 6 -0.3582 -5.3056 -0.0533 30 1 -0.4849 0.8401 -0.0004 31 1 1.8382 -4.2346 0.9980 32 1 2.5594 -4.0340 -0.6593 33 1 -0.7168 -2.1422 -0.6594 34 1 -0.5301 -2.8671 0.9979 35 1 -0.6615 -4.0127 -2.5295 36 1 0.9152 -3.1857 -2.5029 37 1 0.9312 -5.3917 -3.7558 38 1 2.0967 -5.3177 -2.4090 39 1 -2.4894 -12.6282 -1.3195 40 1 -3.2054 -13.0803 -3.6092 41 1 -2.7489 -11.4704 -5.4087 42 1 -1.5654 -9.3821 -4.9338 43 1 1.3312 -6.6443 -0.1718 44 1 -0.2537 -7.4492 -0.2863 45 1 -0.2947 -5.2843 1.0347 46 1 -1.4049 -5.2998 -0.3574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035847896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = 125.442526 kcal Electronic energy + Delta-G solvation = -29353.012048 eV Core-core repulsion = 25439.257962 eV Total energy + Delta-G solvation = -3913.754086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.77249 -40.07970 -38.51382 -38.04995 -35.66264 -32.98845 -32.38842 -31.06297 -30.52294 -30.50209 -29.71960 -26.88579 -25.10759 -24.59979 -23.64507 -23.32883 -22.70699 -22.26756 -21.04479 -19.50735 -18.31724 -18.06637 -17.15923 -16.67278 -16.35118 -16.10579 -15.72881 -15.55732 -14.84744 -14.73174 -14.58153 -14.40529 -14.14853 -13.76427 -13.62857 -13.51206 -13.01346 -12.66489 -12.47351 -12.33972 -12.19947 -12.06026 -11.60372 -11.43083 -11.19909 -10.99534 -10.87514 -10.82125 -10.72742 -10.41800 -10.27793 -10.10975 -9.95908 -9.65897 -9.39694 -9.27070 -9.06254 -8.74378 -8.49658 -8.26714 -6.80518 -5.71652 -3.03117 0.53393 1.06612 1.68506 2.36508 3.03209 3.18684 3.41344 3.46707 3.49194 3.54634 4.05107 4.19381 4.43580 4.50072 4.67555 4.82317 5.02866 5.10974 5.13650 5.20275 5.31638 5.35243 5.42304 5.48864 5.57093 5.65907 5.69513 5.80003 5.91145 5.99765 6.00039 6.08121 6.17922 6.22021 6.28518 6.35122 6.39659 6.47666 6.53156 6.66649 6.71572 6.76263 6.88836 6.95638 7.29874 7.43138 7.44711 7.60588 7.64608 8.04255 8.19834 9.10386 9.76404 10.67415 11.45404 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031646 B = 0.002329 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.563850 B =12018.984397 C =12402.794109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.114 3.886 15 N -0.589 5.589 16 C 0.600 3.400 17 O -0.537 6.537 18 C 0.017 3.983 19 N -0.203 5.203 20 N -0.420 5.420 21 H 0.446 0.554 22 C 0.066 3.934 23 C -0.123 4.123 24 C -0.083 4.083 25 C -0.143 4.143 26 C -0.040 4.040 27 C -0.110 4.110 28 C 0.088 3.912 29 C -0.117 4.117 30 H 0.252 0.748 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 -26.780 -3.531 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.336 5.336 10 C 0.001 3.999 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.007 4.007 15 N -0.321 5.321 16 C 0.385 3.615 17 O -0.412 6.412 18 C -0.154 4.154 19 N -0.033 5.033 20 N -0.139 5.139 21 H 0.291 0.709 22 C -0.047 4.047 23 C -0.144 4.144 24 C -0.104 4.104 25 C -0.162 4.162 26 C -0.060 4.060 27 C -0.117 4.117 28 C -0.035 4.035 29 C -0.156 4.156 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.086 0.914 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.958 -25.942 -3.168 26.601 hybrid contribution 0.152 0.506 0.303 0.609 sum -4.805 -25.436 -2.866 26.045 Atomic orbital electron populations 1.69836 1.04956 1.25054 1.57015 1.24765 0.95640 0.97415 1.02778 0.86086 0.78737 0.83979 0.77213 1.20538 1.21755 1.21886 1.19057 0.90219 0.82113 1.43269 0.90388 1.45979 1.02399 0.99200 1.85996 1.22586 0.94461 0.86509 0.96376 1.22390 0.97915 0.95599 0.95119 1.22227 0.88029 0.88465 0.96498 1.21482 1.00983 0.96726 0.94194 1.21806 0.96224 0.84010 0.98704 1.47988 1.56097 1.20430 1.07538 1.16760 0.77771 0.81006 0.85914 1.90774 1.57254 1.79815 1.13405 1.22883 1.05863 0.97494 0.89132 1.72867 1.13268 0.99071 1.18045 1.43246 1.45869 1.14583 1.10160 0.70899 1.19208 1.01238 0.97000 0.87262 1.19776 1.01844 0.94889 0.97888 1.20752 0.98320 0.99362 0.91930 1.20857 1.01127 0.94450 0.99785 1.20444 0.94305 0.96680 0.94610 1.19409 1.03642 0.93954 0.94714 1.22489 1.02185 1.00550 0.78306 1.21821 0.99467 0.93963 1.00319 0.93805 0.95185 0.94166 0.91027 0.95836 0.92040 0.89408 0.89152 0.91150 0.85452 0.85160 0.85225 0.84282 0.91408 0.86566 0.90833 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 11.39 55.49 0.63 -26.91 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.54 3.53 -179.81 -0.64 -16.17 16 10 C 0.13 2.55 7.72 -3.15 -0.02 2.53 16 11 C -0.11 -2.00 0.77 -154.43 -0.12 -2.12 16 12 C 0.17 4.06 6.64 -3.17 -0.02 4.04 16 13 C -0.10 -1.69 5.21 -26.72 -0.14 -1.83 16 14 C 0.11 1.76 6.31 -3.57 -0.02 1.74 16 15 N -0.59 -8.75 2.94 -173.80 -0.51 -9.26 16 16 C 0.60 9.33 7.67 -12.53 -0.10 9.23 16 17 O -0.54 -9.48 15.84 5.27 0.08 -9.40 16 18 C 0.02 0.23 7.02 -80.75 -0.57 -0.33 16 19 N -0.20 -2.31 8.58 34.46 0.30 -2.02 16 20 N -0.42 -3.59 6.85 32.34 0.22 -3.37 16 21 H 0.45 2.06 8.96 -190.49 -1.71 0.35 16 22 C 0.07 0.63 7.38 -84.21 -0.62 0.01 16 23 C -0.12 -0.87 10.03 -39.82 -0.40 -1.27 16 24 C -0.08 -0.56 9.96 -39.90 -0.40 -0.95 16 25 C -0.14 -1.14 9.98 -39.89 -0.40 -1.54 16 26 C -0.04 -0.44 9.88 -39.78 -0.39 -0.83 16 27 C -0.11 -1.34 6.34 -105.05 -0.67 -2.01 16 28 C 0.09 1.18 6.03 -3.66 -0.02 1.16 16 29 C -0.12 -1.76 5.26 -26.72 -0.14 -1.90 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.03 0.59 8.07 -51.92 -0.42 0.17 16 32 H 0.04 0.78 7.41 -51.93 -0.38 0.39 16 33 H 0.07 1.88 7.12 -51.93 -0.37 1.51 16 34 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.75 8.01 -51.93 -0.42 1.33 16 37 H 0.09 1.41 6.98 -51.93 -0.36 1.05 16 38 H 0.07 1.04 7.49 -51.93 -0.39 0.65 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.14 1.57 7.68 -52.48 -0.40 1.16 16 43 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.12 1.44 4.08 -77.36 -0.32 1.13 16 45 H 0.07 1.06 8.12 -51.92 -0.42 0.64 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -34.14 369.11 -11.35 -45.49 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.69 Total: -0.53 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -4.28 Total: -0.76 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.00 Total: -57.72 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.14 -11.35 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035847896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.932 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds