Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48507 * 109.47024 * 274.99709 * 3 2 1 5 5 H 1.48492 * 109.47334 * 34.99537 * 3 2 1 6 6 H 1.48501 * 109.47465 * 155.00091 * 3 2 1 7 7 C 1.38810 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00572 * 174.50708 * 7 2 1 9 9 N 1.36943 * 119.99984 * 354.49882 * 7 2 1 10 10 C 1.47662 * 126.19696 * 5.24272 * 9 7 2 11 11 C 1.54648 * 106.93920 * 178.33989 * 10 9 7 12 12 C 1.56270 * 102.20553 * 335.91962 * 11 10 9 13 13 H 1.08995 * 112.61332 * 158.91533 * 12 11 10 14 14 C 1.51878 * 106.81787 * 282.54864 * 12 11 10 15 15 N 1.43518 * 116.04304 * 130.06576 * 14 12 11 16 16 C 1.34780 * 115.76509 * 180.56874 * 15 14 12 17 17 O 1.21635 * 119.99454 * 4.65994 * 16 15 14 18 18 C 1.47250 * 119.99963 * 184.66959 * 16 15 14 19 19 C 1.38938 * 120.90673 * 304.49561 * 18 16 15 20 20 C 1.39768 * 119.18991 * 180.02562 * 19 18 16 21 21 C 1.35069 * 121.27700 * 359.97418 * 20 19 18 22 22 N 1.36232 * 121.76799 * 0.04933 * 21 20 19 23 23 N 1.40081 * 132.48418 * 180.24910 * 22 21 20 24 24 C 1.31353 * 108.87999 * 180.11237 * 23 22 21 25 25 C 1.38875 * 108.94722 * 359.64005 * 24 23 22 26 26 C 1.37184 * 120.19013 * 359.97438 * 22 21 20 27 27 C 1.44222 * 128.47668 * 0.85015 * 15 14 12 28 28 C 1.51806 * 112.77736 * 5.70212 * 27 15 14 29 29 C 1.46655 * 126.20034 * 185.23795 * 9 7 2 30 30 H 1.08998 * 108.98733 * 90.77426 * 29 9 7 31 31 H 0.96996 * 119.99972 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.96568 * 58.96729 * 10 9 7 33 33 H 1.08997 * 109.96859 * 297.71490 * 10 9 7 34 34 H 1.08996 * 110.85796 * 217.73913 * 11 10 9 35 35 H 1.08996 * 110.85599 * 94.09531 * 11 10 9 36 36 H 1.08998 * 108.16206 * 8.35845 * 14 12 11 37 37 H 1.08995 * 108.16430 * 251.77674 * 14 12 11 38 38 H 1.07998 * 120.40000 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.36099 * 180.02562 * 20 19 18 40 40 H 1.08005 * 119.11805 * 180.02562 * 21 20 19 41 41 H 1.08007 * 125.52837 * 179.90474 * 24 23 22 42 42 H 1.07999 * 126.21972 * 180.23432 * 25 24 23 43 43 H 1.08999 * 108.82669 * 126.75725 * 27 15 14 44 44 H 1.08996 * 108.83497 * 245.07205 * 27 15 14 45 45 H 1.09010 * 109.08709 * 203.86578 * 28 27 15 46 46 H 1.08998 * 108.79031 * 85.17468 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0865 -1.2043 -0.0901 9 7 1.3303 -2.3854 0.1126 10 6 -0.1370 -2.5495 0.1334 11 6 -0.4194 -4.0667 0.2333 12 6 0.8869 -4.6856 -0.3604 13 1 1.0396 -5.7192 -0.0500 14 6 0.7921 -4.5473 -1.8699 15 7 1.9347 -3.9753 -2.5232 16 6 1.8399 -3.8441 -3.8613 17 8 0.7998 -4.1223 -4.4273 18 6 2.9953 -3.3644 -4.6378 19 6 3.6074 -2.1549 -4.3332 20 6 4.7015 -1.7339 -5.0942 21 6 5.1731 -2.4797 -6.1168 22 7 4.6077 -3.6721 -6.4552 23 7 4.9076 -4.6133 -7.4483 24 6 4.0540 -5.6080 -7.3629 25 6 3.1769 -5.3608 -6.3149 26 6 3.5300 -4.1486 -5.7527 27 6 3.1734 -3.5274 -1.9359 28 6 3.2665 -3.8373 -0.4527 29 6 1.9275 -3.7193 0.2350 30 1 2.0631 -3.9516 1.2913 31 1 -0.4850 0.8400 0.0004 32 1 -0.5693 -2.1499 -0.7840 33 1 -0.5569 -2.0350 0.9978 34 1 -1.2865 -4.3404 -0.3677 35 1 -0.5547 -4.3687 1.2718 36 1 -0.0759 -3.9298 -2.1006 37 1 0.6197 -5.5375 -2.2916 38 1 3.2416 -1.5472 -3.5188 39 1 5.1796 -0.7943 -4.8595 40 1 6.0210 -2.1211 -6.6816 41 1 4.0394 -6.4792 -8.0012 42 1 2.3664 -5.9997 -5.9969 43 1 4.0027 -4.0113 -2.4519 44 1 3.2581 -2.4493 -2.0725 45 1 3.9669 -3.1439 0.0131 46 1 3.6405 -4.8536 -0.3292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036761055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = 121.811045 kcal Electronic energy + Delta-G solvation = -30882.108389 eV Core-core repulsion = 26968.196830 eV Total energy + Delta-G solvation = -3913.911559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98297 -40.37117 -38.25100 -37.06482 -35.10766 -33.26424 -32.55507 -31.91611 -30.74401 -29.60679 -28.70188 -27.64798 -25.57744 -24.62516 -23.43861 -22.95576 -22.51818 -21.70099 -20.15790 -19.80732 -18.00199 -17.46139 -17.37977 -16.59959 -16.34597 -15.89806 -15.68720 -15.50497 -15.50095 -14.75155 -14.41217 -14.13076 -13.95012 -13.76272 -13.42524 -13.15301 -13.02442 -12.59459 -12.31100 -12.11956 -12.06003 -11.92339 -11.53080 -11.48775 -11.27297 -11.00130 -10.92113 -10.81251 -10.75376 -10.38572 -10.23459 -10.00862 -9.87948 -9.74578 -9.68701 -9.50999 -9.43931 -8.65275 -8.11286 -7.66046 -6.87659 -5.77727 -3.09922 0.44401 1.05670 2.10149 2.65642 2.75895 3.22677 3.31576 3.37561 3.41100 3.46513 4.15222 4.37882 4.41483 4.63317 4.64486 4.85042 5.04135 5.13384 5.24420 5.24706 5.36602 5.43945 5.46411 5.48511 5.56255 5.67317 5.68882 5.80620 5.90585 5.94692 6.03786 6.06680 6.18575 6.20668 6.28067 6.30055 6.38261 6.46060 6.50056 6.63315 6.69087 6.74726 6.83815 7.10265 7.45120 7.49054 7.58635 7.63741 7.76518 8.18510 8.42803 9.13576 9.76551 10.45642 11.34752 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.004421 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.908292 B = 6331.865860 C = 7706.728934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.144 3.856 15 N -0.564 5.564 16 C 0.557 3.443 17 O -0.532 6.532 18 C -0.115 4.115 19 C -0.044 4.044 20 C -0.164 4.164 21 C 0.121 3.879 22 N -0.281 5.281 23 N -0.322 5.322 24 C 0.079 3.921 25 C -0.273 4.273 26 C 0.132 3.868 27 C 0.121 3.879 28 C -0.124 4.124 29 C 0.171 3.829 30 H 0.026 0.974 31 H 0.252 0.748 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.156 0.844 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.979 -8.912 -7.091 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.101 0.899 14 C 0.022 3.978 15 N -0.294 5.294 16 C 0.343 3.657 17 O -0.410 6.410 18 C -0.120 4.120 19 C -0.067 4.067 20 C -0.186 4.186 21 C -0.004 4.004 22 N -0.048 5.048 23 N -0.145 5.145 24 C -0.098 4.098 25 C -0.302 4.302 26 C 0.012 3.988 27 C -0.002 4.002 28 C -0.163 4.163 29 C 0.063 3.937 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.210 0.790 42 H 0.173 0.827 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.413 -8.449 -8.038 14.987 hybrid contribution -0.238 0.769 0.486 0.940 sum 9.175 -7.680 -7.552 14.149 Atomic orbital electron populations 1.69950 1.04887 1.25007 1.56323 1.24772 0.95571 0.97432 1.02303 0.86258 0.78784 0.84184 0.77487 1.21742 1.21692 1.20626 1.18893 0.90576 0.82229 1.43715 0.90475 1.44356 1.01397 0.99847 1.86095 1.21316 0.84341 0.88264 1.00885 1.23333 0.95651 0.99538 0.99601 1.22460 0.98643 0.98713 0.93495 0.89942 1.20343 0.87670 0.97234 0.92587 1.46182 1.16678 1.60585 1.05952 1.17770 0.86835 0.78637 0.82479 1.90791 1.29540 1.50069 1.70556 1.20418 0.98587 0.96376 0.96623 1.22002 0.92553 0.94195 0.97943 1.20719 0.99410 1.01909 0.96608 1.21459 0.98423 0.83159 0.97334 1.46158 1.21366 1.14826 1.22457 1.77818 1.25817 1.01124 1.09751 1.23836 0.92000 0.97121 0.96875 1.21267 1.07447 0.98739 1.02744 1.20156 0.90041 0.94989 0.93588 1.20931 0.84098 1.00303 0.94835 1.21240 0.99888 1.01063 0.94129 1.20202 0.90480 0.87119 0.95931 0.95639 0.93752 0.93819 0.93698 0.91883 0.92180 0.91139 0.93192 0.82330 0.82173 0.81503 0.79030 0.82679 0.92889 0.90583 0.90375 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.63 10.44 55.49 0.58 -25.05 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 3 Si 0.90 20.62 29.56 -169.99 -5.02 15.60 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.23 -5.58 8.91 -15.06 -0.13 -5.72 16 8 H 0.08 1.80 6.74 -52.49 -0.35 1.44 16 9 N -0.59 -13.46 3.05 -164.17 -0.50 -13.96 16 10 C 0.18 4.04 4.82 -2.54 -0.01 4.03 16 11 C -0.14 -2.52 6.14 -24.11 -0.15 -2.67 16 12 C -0.11 -1.86 3.80 -88.92 -0.34 -2.20 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.14 2.54 4.62 -6.19 -0.03 2.52 16 15 N -0.56 -9.88 3.19 -180.55 -0.58 -10.45 16 16 C 0.56 10.23 7.00 -12.60 -0.09 10.14 16 17 O -0.53 -11.32 16.69 5.25 0.09 -11.23 16 18 C -0.11 -1.82 4.75 -102.68 -0.49 -2.31 16 19 C -0.04 -0.60 8.14 -38.75 -0.32 -0.91 16 20 C -0.16 -1.71 9.90 -40.14 -0.40 -2.10 16 21 C 0.12 1.31 11.12 -16.72 -0.19 1.13 16 22 N -0.28 -3.94 3.89 -9.41 -0.04 -3.97 16 23 N -0.32 -4.52 12.66 30.51 0.39 -4.13 16 24 C 0.08 0.98 11.95 -17.52 -0.21 0.77 16 25 C -0.27 -3.92 10.78 -39.36 -0.42 -4.35 16 26 C 0.13 2.03 6.88 -82.19 -0.57 1.47 16 27 C 0.12 1.90 4.40 -5.86 -0.03 1.88 16 28 C -0.12 -1.95 5.06 -28.35 -0.14 -2.09 16 29 C 0.17 3.14 2.93 -68.34 -0.20 2.94 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 32 H 0.04 1.14 7.28 -51.92 -0.38 0.76 16 33 H 0.04 1.15 7.46 -51.93 -0.39 0.77 16 34 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.44 6.50 -51.93 -0.34 1.10 16 37 H 0.05 0.83 8.10 -51.93 -0.42 0.40 16 38 H 0.16 2.25 6.30 -52.49 -0.33 1.92 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.19 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 44 H 0.08 1.28 4.84 -51.93 -0.25 1.03 16 45 H 0.08 1.23 7.38 -51.92 -0.38 0.85 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -32.34 360.31 -9.60 -41.94 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.14 Total: 3.51 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.80 Total: 2.31 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.15 Total: -57.56 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.34 -9.60 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036761055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.755 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds