Wall clock time and date at job start Sat Apr 11 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47161 * 299.99911 * 3 2 1 6 6 H 1.48497 * 109.46864 * 59.99971 * 3 2 1 7 7 C 1.38817 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99684 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.47431 * 126.06382 * 359.97438 * 9 7 2 11 11 C 1.54493 * 107.15591 * 181.62056 * 10 9 7 12 12 C 1.56021 * 102.62151 * 22.83237 * 11 10 9 13 13 H 1.08994 * 113.55758 * 202.58594 * 12 11 10 14 14 C 1.53216 * 106.35300 * 78.27972 * 12 11 10 15 15 N 1.46521 * 110.20663 * 202.95279 * 14 12 11 16 16 C 1.34773 * 121.01143 * 235.59902 * 15 14 12 17 17 O 1.21633 * 120.00105 * 5.79686 * 16 15 14 18 18 C 1.47263 * 120.00314 * 185.80083 * 16 15 14 19 19 C 1.38926 * 120.90710 * 53.88114 * 18 16 15 20 20 C 1.39767 * 119.19235 * 179.97438 * 19 18 16 21 21 C 1.35066 * 121.27208 * 0.05935 * 20 19 18 22 22 N 1.36222 * 121.77253 * 359.95944 * 21 20 19 23 23 N 1.40084 * 132.49047 * 180.02562 * 22 21 20 24 24 C 1.31355 * 108.88363 * 180.02562 * 23 22 21 25 25 C 1.38875 * 108.94886 * 359.97438 * 24 23 22 26 26 C 1.37190 * 120.18952 * 0.02562 * 22 21 20 27 27 C 1.47150 * 117.98120 * 55.86928 * 15 14 12 28 28 C 1.52277 * 107.60268 * 302.63917 * 27 15 14 29 29 C 1.46470 * 126.05261 * 180.02562 * 9 7 2 30 30 H 1.08999 * 108.34683 * 269.81101 * 29 9 7 31 31 H 0.97001 * 120.00286 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.90353 * 301.00247 * 10 9 7 33 33 H 1.09005 * 109.90201 * 62.23720 * 10 9 7 34 34 H 1.09004 * 110.77815 * 264.55222 * 11 10 9 35 35 H 1.09000 * 110.78529 * 141.12042 * 11 10 9 36 36 H 1.09000 * 109.34393 * 82.72641 * 14 12 11 37 37 H 1.09002 * 109.22808 * 323.10125 * 14 12 11 38 38 H 1.08006 * 120.40846 * 0.04543 * 19 18 16 39 39 H 1.08001 * 119.36708 * 180.02562 * 20 19 18 40 40 H 1.08008 * 119.11678 * 180.23648 * 21 20 19 41 41 H 1.08001 * 125.52862 * 179.97438 * 24 23 22 42 42 H 1.08003 * 126.22359 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.81264 * 61.83116 * 27 15 14 44 44 H 1.09002 * 109.81752 * 182.74123 * 27 15 14 45 45 H 1.09003 * 108.29031 * 293.73356 * 28 27 15 46 46 H 1.08998 * 109.31763 * 174.92296 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1405 -2.5437 0.0005 11 6 -0.4378 -4.0592 0.0418 12 6 0.8723 -4.6471 0.6520 13 1 1.0296 -5.6992 0.4145 14 6 0.7984 -4.3905 2.1607 15 7 2.1439 -4.3926 2.7409 16 6 2.4587 -5.2145 3.7616 17 8 1.6548 -6.0427 4.1457 18 6 3.7757 -5.1099 4.4120 19 6 4.2281 -3.8972 4.9167 20 6 5.4839 -3.8389 5.5275 21 6 6.2633 -4.9368 5.6343 22 7 5.8653 -6.1483 5.1552 23 7 6.4767 -7.4086 5.1439 24 6 5.6732 -8.2657 4.5564 25 6 4.5163 -7.6043 4.1655 26 6 4.6445 -6.2811 4.5435 27 6 3.1394 -3.4659 2.1793 28 6 3.2626 -3.7684 0.6919 29 6 1.9200 -3.7267 -0.0005 30 1 2.0562 -4.0416 -1.0351 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5645 -2.0583 0.8796 33 1 -0.5606 -2.1077 -0.9059 34 1 -0.6049 -4.4480 -0.9627 35 1 -1.2921 -4.2683 0.6856 36 1 0.2011 -5.1716 2.6310 37 1 0.3304 -3.4221 2.3377 38 1 3.6164 -3.0105 4.8391 39 1 5.8381 -2.8977 5.9212 40 1 7.2261 -4.8530 6.1165 41 1 5.8788 -9.3147 4.4024 42 1 3.6702 -8.0440 3.6583 43 1 2.8052 -2.4374 2.3161 44 1 4.1001 -3.6119 2.6730 45 1 3.6922 -4.7639 0.5798 46 1 3.9267 -3.0383 0.2293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036761056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:31 Heat of formation + Delta-G solvation = 114.289722 kcal Electronic energy + Delta-G solvation = -30439.935899 eV Core-core repulsion = 26525.698191 eV Total energy + Delta-G solvation = -3914.237708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06635 -40.14074 -38.30061 -37.16506 -35.05487 -33.20166 -32.60121 -31.69753 -30.85205 -29.48861 -28.69967 -27.55617 -25.76063 -24.60519 -23.55334 -22.91399 -22.48908 -21.75946 -20.14606 -19.82869 -18.45306 -17.55953 -17.37420 -16.57688 -16.25533 -16.04362 -15.73349 -15.58241 -15.18904 -14.65131 -14.53449 -14.11357 -13.96685 -13.88225 -13.38893 -13.07078 -12.94724 -12.63846 -12.33824 -12.28544 -12.16609 -12.00680 -11.57183 -11.46837 -11.15913 -11.10703 -10.99023 -10.84094 -10.69276 -10.50094 -10.19353 -10.08006 -9.95354 -9.69313 -9.67834 -9.61646 -9.54117 -8.66120 -8.27942 -7.76748 -6.87272 -5.77458 -3.10294 0.30684 0.93510 1.99805 2.57197 2.63531 3.05086 3.33422 3.34290 3.38934 3.42170 4.04840 4.24343 4.42821 4.49748 4.52344 4.71963 5.08341 5.12826 5.21840 5.30515 5.31863 5.43765 5.49168 5.51311 5.54075 5.57698 5.75276 5.77253 5.85285 5.89355 5.99159 6.05493 6.09497 6.24300 6.25997 6.31047 6.38370 6.41645 6.51123 6.63127 6.67191 6.73664 6.84907 6.89580 7.35626 7.51491 7.57247 7.64346 7.76761 8.19001 8.26815 9.15036 9.77252 10.45125 11.34569 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003658 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.090765 B = 7653.083190 C = 8796.540713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.115 4.115 13 H 0.078 0.922 14 C 0.126 3.874 15 N -0.589 5.589 16 C 0.567 3.433 17 O -0.538 6.538 18 C -0.112 4.112 19 C -0.045 4.045 20 C -0.169 4.169 21 C 0.126 3.874 22 N -0.282 5.282 23 N -0.320 5.320 24 C 0.080 3.920 25 C -0.268 4.268 26 C 0.129 3.871 27 C 0.109 3.891 28 C -0.128 4.128 29 C 0.171 3.829 30 H 0.019 0.981 31 H 0.251 0.749 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.194 0.806 42 H 0.157 0.843 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.406 -9.947 8.589 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.136 4.136 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.320 5.320 16 C 0.354 3.646 17 O -0.417 6.417 18 C -0.117 4.117 19 C -0.068 4.068 20 C -0.191 4.191 21 C 0.000 4.000 22 N -0.049 5.049 23 N -0.142 5.142 24 C -0.097 4.097 25 C -0.297 4.297 26 C 0.009 3.991 27 C -0.013 4.013 28 C -0.167 4.167 29 C 0.063 3.937 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.211 0.789 42 H 0.175 0.825 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.130 -10.110 9.351 17.096 hybrid contribution -0.270 0.935 -0.523 1.105 sum 9.860 -9.175 8.828 16.104 Atomic orbital electron populations 1.69961 1.04846 1.24887 1.56897 1.24769 0.95614 0.97493 1.02379 0.86139 0.78718 0.84182 0.77278 1.20542 1.21848 1.21853 1.18990 0.90378 0.82153 1.43763 0.90312 1.44345 1.01512 0.99378 1.86814 1.21243 0.84318 0.88267 1.00989 1.23135 0.95822 0.99552 0.99565 1.22733 0.97822 0.98521 0.94490 0.90365 1.21628 0.82060 1.03069 0.92786 1.48018 1.13667 1.37953 1.32366 1.17654 0.85720 0.81062 0.80185 1.90793 1.50663 1.35859 1.64356 1.20430 0.95309 0.91393 1.04581 1.21750 0.95139 0.96593 0.93318 1.20664 0.95088 0.98456 1.04853 1.21469 1.00633 0.81142 0.96713 1.46176 1.12819 1.07727 1.38172 1.77839 1.20970 0.86376 1.29052 1.23872 0.91647 0.99772 0.94439 1.21311 1.02448 0.91136 1.14765 1.20152 0.86511 0.94960 0.97434 1.21800 0.90912 0.94445 0.94136 1.21447 0.99367 1.00834 0.95063 1.20245 0.90664 0.87123 0.95661 0.96329 0.93821 0.93475 0.93975 0.92295 0.91934 0.90033 0.90015 0.83181 0.82197 0.81439 0.78913 0.82539 0.88990 0.90891 0.92945 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.40 10.38 55.49 0.58 -24.82 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 20.73 29.55 -169.99 -5.02 15.70 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.59 9.00 -15.06 -0.14 -5.72 16 8 H 0.08 1.88 6.66 -52.49 -0.35 1.53 16 9 N -0.59 -13.55 3.12 -164.52 -0.51 -14.06 16 10 C 0.18 3.96 4.63 -2.75 -0.01 3.95 16 11 C -0.14 -2.51 6.29 -24.33 -0.15 -2.66 16 12 C -0.12 -1.96 3.87 -88.38 -0.34 -2.30 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 2.16 5.46 -3.92 -0.02 2.14 16 15 N -0.59 -9.52 2.93 -174.78 -0.51 -10.04 16 16 C 0.57 9.30 7.15 -12.59 -0.09 9.21 16 17 O -0.54 -10.34 16.54 5.25 0.09 -10.26 16 18 C -0.11 -1.57 4.85 -102.68 -0.50 -2.06 16 19 C -0.04 -0.49 7.83 -38.76 -0.30 -0.79 16 20 C -0.17 -1.41 9.90 -40.14 -0.40 -1.80 16 21 C 0.13 1.18 11.12 -16.73 -0.19 1.00 16 22 N -0.28 -3.63 3.89 -9.42 -0.04 -3.66 16 23 N -0.32 -4.21 12.66 30.51 0.39 -3.83 16 24 C 0.08 0.93 11.95 -17.52 -0.21 0.72 16 25 C -0.27 -3.63 10.79 -39.36 -0.42 -4.05 16 26 C 0.13 1.83 6.88 -82.19 -0.57 1.27 16 27 C 0.11 1.69 5.61 -4.06 -0.02 1.67 16 28 C -0.13 -2.12 5.09 -28.04 -0.14 -2.26 16 29 C 0.17 3.23 2.89 -68.38 -0.20 3.04 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.05 1.17 6.99 -51.93 -0.36 0.81 16 33 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 36 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.08 1.55 6.79 -51.93 -0.35 1.20 16 38 H 0.15 1.48 7.79 -52.48 -0.41 1.07 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.16 2.09 8.06 -52.48 -0.42 1.66 16 43 H 0.09 1.61 7.48 -51.93 -0.39 1.22 16 44 H 0.07 0.97 5.28 -51.93 -0.27 0.70 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.31 6.97 -51.93 -0.36 0.94 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.81 362.79 -9.55 -41.36 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.19 Total: 3.06 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.80 Total: 1.08 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.10 Total: -56.41 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.81 -9.55 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036761056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.648 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds