Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00323 * 2 1 4 4 H 1.48495 * 109.47129 * 240.00229 * 3 2 1 5 5 H 1.48508 * 109.46741 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47201 * 119.99651 * 3 2 1 7 7 C 1.38817 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.47779 * 125.96161 * 0.02562 * 9 7 2 11 11 C 1.55099 * 104.91785 * 201.53409 * 10 9 7 12 12 C 1.56116 * 101.07888 * 322.94307 * 11 10 9 13 13 H 1.09003 * 112.18571 * 158.29123 * 12 11 10 14 14 C 1.53108 * 106.64996 * 281.15003 * 12 11 10 15 15 N 1.46688 * 109.12301 * 160.08115 * 14 12 11 16 16 C 1.34779 * 120.97736 * 121.19168 * 15 14 12 17 17 O 1.21601 * 120.00106 * 354.18913 * 16 15 14 18 18 C 1.47466 * 120.00237 * 174.17788 * 16 15 14 19 19 C 1.38997 * 120.29850 * 306.22871 * 18 16 15 20 20 C 1.38503 * 120.37024 * 179.97438 * 19 18 16 21 21 C 1.37827 * 120.78817 * 359.97438 * 20 19 18 22 22 C 1.39216 * 120.19685 * 359.97438 * 21 20 19 23 23 N 1.37225 * 133.64703 * 179.97438 * 22 21 20 24 24 H 0.96996 * 125.98659 * 0.02562 * 23 22 21 25 25 N 1.40032 * 108.03078 * 180.02562 * 23 22 21 26 26 C 1.30268 * 109.70316 * 0.02562 * 25 23 22 27 27 C 1.40681 * 119.78852 * 359.76835 * 22 21 20 28 28 C 1.46528 * 118.04608 * 301.17585 * 15 14 12 29 29 C 1.51783 * 110.13882 * 53.76495 * 28 15 14 30 30 C 1.46249 * 125.96647 * 179.70995 * 9 7 2 31 31 H 1.09003 * 105.49997 * 70.64428 * 30 9 7 32 32 H 0.97004 * 119.99861 * 0.02562 * 1 2 3 33 33 H 1.08995 * 110.35183 * 320.39635 * 10 9 7 34 34 H 1.09004 * 110.34795 * 82.67743 * 10 9 7 35 35 H 1.09001 * 111.09661 * 80.89210 * 11 10 9 36 36 H 1.08998 * 111.09777 * 204.98846 * 11 10 9 37 37 H 1.09002 * 109.52601 * 279.97526 * 14 12 11 38 38 H 1.09004 * 109.52839 * 40.11268 * 14 12 11 39 39 H 1.08007 * 119.81794 * 359.96651 * 19 18 16 40 40 H 1.07999 * 119.60466 * 179.97438 * 20 19 18 41 41 H 1.08007 * 119.90154 * 180.02562 * 21 20 19 42 42 H 1.08005 * 125.64373 * 179.97438 * 26 25 23 43 43 H 1.09000 * 109.35756 * 173.96942 * 28 15 14 44 44 H 1.09000 * 109.36083 * 293.69126 * 28 15 14 45 45 H 1.09001 * 108.36016 * 79.85620 * 29 28 15 46 46 H 1.08995 * 108.36286 * 197.13458 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1443 -2.5415 -0.0005 11 6 -0.3970 -3.9693 0.5500 12 6 0.7953 -4.7514 -0.0856 13 1 1.0240 -5.6673 0.4593 14 6 0.4095 -5.0331 -1.5402 15 7 1.6230 -5.3230 -2.3117 16 6 1.7704 -6.4966 -2.9578 17 8 0.9401 -7.3744 -2.8213 18 6 2.9386 -6.7161 -3.8307 19 6 3.2326 -5.8161 -4.8484 20 6 4.3297 -6.0206 -5.6686 21 6 5.1481 -7.1154 -5.4923 22 6 4.8806 -8.0341 -4.4811 23 7 5.4916 -9.1906 -4.0661 24 1 6.2874 -9.5859 -4.4550 25 7 4.7650 -9.7001 -2.9829 26 6 3.7554 -8.9184 -2.7247 27 6 3.7736 -7.8394 -3.6350 28 6 2.6699 -4.2990 -2.3596 29 6 3.0616 -3.8858 -0.9525 30 6 1.9211 -3.7237 -0.0049 31 1 2.3617 -3.8503 0.9840 32 1 -0.4850 0.8401 -0.0004 33 1 -0.6036 -1.7975 0.6502 34 1 -0.5340 -2.4518 -1.0146 35 1 -0.3413 -3.9857 1.6385 36 1 -1.3530 -4.3605 0.2019 37 1 -0.2611 -5.8916 -1.5795 38 1 -0.0908 -4.1605 -1.9601 39 1 2.6019 -4.9526 -5.0004 40 1 4.5464 -5.3137 -6.4559 41 1 6.0002 -7.2606 -6.1400 42 1 3.0272 -9.0688 -1.9413 43 1 3.5432 -4.6989 -2.8750 44 1 2.2990 -3.4279 -2.8998 45 1 3.7411 -4.6374 -0.5506 46 1 3.5958 -2.9375 -1.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036786767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 95.082500 kcal Electronic energy + Delta-G solvation = -30141.425427 eV Core-core repulsion = 26226.354831 eV Total energy + Delta-G solvation = -3915.070596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76106 -40.13497 -38.33165 -37.06199 -35.17096 -33.03698 -32.58292 -31.82338 -30.32785 -29.97330 -29.16021 -27.66752 -25.63226 -24.38572 -23.32679 -22.82806 -22.49921 -21.81313 -20.24571 -20.03497 -18.58533 -17.58433 -17.28631 -16.52364 -16.31726 -15.82935 -15.48660 -15.23663 -15.10260 -14.97270 -14.47525 -14.37117 -13.95889 -13.80109 -13.72113 -13.05831 -12.84258 -12.64495 -12.20170 -12.13355 -12.08506 -11.88405 -11.68351 -11.36252 -11.22086 -11.17629 -11.01035 -10.76175 -10.56419 -10.53595 -10.20410 -10.10911 -9.94283 -9.71247 -9.65775 -9.52835 -8.92801 -8.65203 -8.33010 -8.21907 -6.83069 -5.70055 -3.08991 0.40033 1.17090 2.28851 2.43740 2.71664 3.11889 3.37174 3.42095 3.43272 3.55051 4.26163 4.44446 4.45348 4.61375 4.69898 4.79144 4.98309 5.15130 5.22272 5.27728 5.38708 5.44708 5.45182 5.52335 5.55531 5.60442 5.71975 5.85672 5.93652 6.00167 6.08510 6.11934 6.14197 6.21189 6.29615 6.34218 6.43515 6.46440 6.59744 6.66736 6.73094 6.94082 6.97498 6.99225 7.30558 7.48441 7.59444 7.61570 7.83202 8.23430 8.31412 9.18220 9.80672 10.47446 11.35876 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.003231 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.647911 B = 8664.451363 C = 9522.712374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.592 5.592 10 C 0.157 3.843 11 C -0.143 4.143 12 C -0.105 4.105 13 H 0.077 0.923 14 C 0.120 3.880 15 N -0.592 5.592 16 C 0.557 3.443 17 O -0.540 6.540 18 C -0.037 4.037 19 C -0.123 4.123 20 C -0.069 4.069 21 C -0.129 4.129 22 C 0.124 3.876 23 N -0.509 5.509 24 H 0.441 0.559 25 N -0.251 5.251 26 C 0.087 3.913 27 C -0.141 4.141 28 C 0.112 3.888 29 C -0.136 4.136 30 C 0.172 3.828 31 H 0.007 0.993 32 H 0.253 0.747 33 H 0.098 0.902 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.195 0.805 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -13.549 -9.935 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.032 3.968 11 C -0.182 4.182 12 C -0.125 4.125 13 H 0.095 0.905 14 C -0.002 4.002 15 N -0.323 5.323 16 C 0.344 3.656 17 O -0.418 6.418 18 C -0.043 4.043 19 C -0.143 4.143 20 C -0.090 4.090 21 C -0.152 4.152 22 C 0.007 3.993 23 N -0.224 5.224 24 H 0.286 0.714 25 N -0.065 5.065 26 C -0.109 4.109 27 C -0.149 4.149 28 C -0.010 4.010 29 C -0.176 4.176 30 C 0.065 3.935 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.211 0.789 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.625 -14.855 -9.477 19.618 hybrid contribution 0.651 1.497 -0.502 1.707 sum 9.276 -13.358 -9.978 19.080 Atomic orbital electron populations 1.69832 1.04869 1.24959 1.57158 1.24750 0.95656 0.97568 1.02405 0.86212 0.78454 0.83307 0.77864 1.21247 1.21632 1.21216 1.18920 0.90397 0.82303 1.43429 0.90541 1.44483 1.01794 0.99226 1.86219 1.21915 0.84651 0.91714 0.98516 1.23293 0.95954 0.98974 0.99969 1.22285 0.97397 0.97655 0.95163 0.90451 1.21747 0.85832 1.01820 0.90813 1.47932 1.19754 1.15607 1.48964 1.18186 0.85420 0.81961 0.80009 1.90783 1.44130 1.42556 1.64330 1.19409 0.94370 0.93763 0.96736 1.21163 0.98388 0.99071 0.95714 1.20922 0.93459 0.96235 0.98375 1.20173 1.02163 0.94663 0.98169 1.18788 0.94116 0.89671 0.96713 1.46077 1.27367 1.20262 1.28725 0.71379 1.76776 1.06255 1.21451 1.02014 1.23964 0.96304 0.91330 0.99265 1.18631 0.98109 0.98134 1.00039 1.21465 0.90137 0.90734 0.98674 1.21206 0.99719 1.01848 0.94799 1.19318 0.91555 0.86699 0.95975 0.97554 0.93685 0.88377 0.96790 0.91904 0.91994 0.89600 0.90182 0.84589 0.84427 0.85282 0.78858 0.90316 0.90916 0.93174 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.77 10.18 55.49 0.56 -25.20 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -5.78 9.59 -15.06 -0.14 -5.92 16 8 H 0.08 1.91 7.02 -52.48 -0.37 1.54 16 9 N -0.59 -14.05 3.32 -165.90 -0.55 -14.60 16 10 C 0.16 3.58 5.35 -2.23 -0.01 3.57 16 11 C -0.14 -2.60 6.47 -23.95 -0.15 -2.76 16 12 C -0.11 -1.82 3.70 -89.08 -0.33 -2.15 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.12 1.98 5.54 -3.88 -0.02 1.96 16 15 N -0.59 -9.18 2.94 -175.43 -0.52 -9.69 16 16 C 0.56 8.66 7.04 -12.50 -0.09 8.57 16 17 O -0.54 -9.79 16.51 5.28 0.09 -9.70 16 18 C -0.04 -0.49 4.65 -104.68 -0.49 -0.97 16 19 C -0.12 -1.32 7.76 -39.20 -0.30 -1.63 16 20 C -0.07 -0.58 10.00 -39.63 -0.40 -0.98 16 21 C -0.13 -1.10 10.06 -39.37 -0.40 -1.49 16 22 C 0.12 1.35 7.32 -84.17 -0.62 0.73 16 23 N -0.51 -5.10 7.45 32.35 0.24 -4.85 16 24 H 0.44 2.86 8.96 -182.65 -1.64 1.22 16 25 N -0.25 -3.11 12.58 30.81 0.39 -2.72 16 26 C 0.09 1.12 11.83 -17.10 -0.20 0.92 16 27 C -0.14 -1.83 6.00 -106.68 -0.64 -2.47 16 28 C 0.11 1.67 5.63 -4.64 -0.03 1.65 16 29 C -0.14 -2.30 5.60 -29.24 -0.16 -2.47 16 30 C 0.17 3.38 2.61 -70.14 -0.18 3.20 16 31 H 0.01 0.14 8.05 -51.93 -0.42 -0.27 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.10 2.57 6.09 -51.93 -0.32 2.25 16 34 H 0.01 0.34 7.10 -51.93 -0.37 -0.03 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 37 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 38 H 0.08 1.42 6.49 -51.93 -0.34 1.09 16 39 H 0.14 1.36 7.74 -52.48 -0.41 0.95 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.19 2.30 8.06 -52.48 -0.42 1.87 16 43 H 0.08 1.01 5.37 -51.93 -0.28 0.73 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.52 6.62 -51.93 -0.34 1.17 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -31.50 361.96 -10.96 -42.47 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.35 Total: 3.20 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -4.26 Total: -0.54 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.13 Total: -57.07 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.50 -10.96 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.549 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds