Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47016 * 299.99930 * 3 2 1 6 6 H 1.48496 * 109.46812 * 59.99932 * 3 2 1 7 7 C 1.38809 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00268 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.48165 * 126.40618 * 0.02562 * 9 7 2 11 11 C 1.55281 * 107.04607 * 184.92316 * 10 9 7 12 12 C 1.53433 * 101.41812 * 22.96930 * 11 10 9 13 13 H 1.09000 * 111.72021 * 78.34983 * 12 11 10 14 14 C 1.52698 * 114.10841 * 206.66685 * 12 11 10 15 15 N 1.47721 * 106.13144 * 169.61053 * 14 12 11 16 16 C 1.34772 * 119.68662 * 127.88394 * 15 14 12 17 17 O 1.21608 * 119.99761 * 3.86275 * 16 15 14 18 18 C 1.47463 * 120.00300 * 183.86581 * 16 15 14 19 19 C 1.39005 * 120.29121 * 306.14948 * 18 16 15 20 20 C 1.38499 * 120.36397 * 179.97438 * 19 18 16 21 21 C 1.37829 * 120.79336 * 359.97438 * 20 19 18 22 22 C 1.39214 * 120.19869 * 359.97438 * 21 20 19 23 23 N 1.37215 * 133.65618 * 180.02562 * 22 21 20 24 24 H 0.96999 * 125.97645 * 359.97438 * 23 22 21 25 25 N 1.40023 * 108.03652 * 179.77594 * 23 22 21 26 26 C 1.30261 * 109.70479 * 0.38838 * 25 23 22 27 27 C 1.40683 * 119.78631 * 0.02562 * 22 21 20 28 28 C 1.46592 * 120.62804 * 307.61449 * 15 14 12 29 29 C 1.53955 * 110.57978 * 48.09833 * 28 15 14 30 30 C 1.45465 * 126.40944 * 180.02562 * 9 7 2 31 31 H 1.09007 * 109.26280 * 265.54569 * 30 9 7 32 32 H 0.97003 * 120.00079 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.91672 * 304.27617 * 10 9 7 34 34 H 1.09003 * 109.91671 * 65.37336 * 10 9 7 35 35 H 1.09007 * 110.95556 * 140.61665 * 11 10 9 36 36 H 1.09002 * 110.95565 * 264.34444 * 11 10 9 37 37 H 1.08997 * 110.23337 * 50.44576 * 14 12 11 38 38 H 1.09005 * 110.13680 * 288.72074 * 14 12 11 39 39 H 1.07997 * 119.81587 * 359.94856 * 19 18 16 40 40 H 1.08010 * 119.60500 * 180.02562 * 20 19 18 41 41 H 1.08005 * 119.90088 * 179.97438 * 21 20 19 42 42 H 1.08004 * 125.64724 * 179.87170 * 26 25 23 43 43 H 1.08999 * 109.25956 * 168.38286 * 28 15 14 44 44 H 1.09005 * 109.25899 * 287.81541 * 28 15 14 45 45 H 1.08993 * 109.88162 * 68.40509 * 29 28 15 46 46 H 1.09001 * 109.88206 * 189.48436 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1467 -2.5534 -0.0005 11 6 -0.4339 -4.0741 0.1269 12 6 0.8650 -4.5756 0.7714 13 1 0.8910 -4.3678 1.8410 14 6 1.1904 -6.0356 0.4643 15 7 2.5704 -6.2578 0.9423 16 6 2.8325 -7.2895 1.7688 17 8 1.9500 -8.0733 2.0616 18 6 4.1893 -7.4680 2.3181 19 6 5.2876 -7.5270 1.4682 20 6 6.5627 -7.6941 1.9825 21 6 6.7667 -7.8042 3.3412 22 6 5.6870 -7.7479 4.2182 23 7 5.5704 -7.8244 5.5832 24 1 6.2999 -7.9420 6.2117 25 7 4.2148 -7.6982 5.9104 26 6 3.5116 -7.5591 4.8227 27 6 4.3847 -7.5786 3.7135 28 6 3.6585 -5.3702 0.5215 29 6 3.2479 -3.8955 0.6849 30 6 1.9079 -3.7211 -0.0005 31 1 1.9786 -4.0826 -1.0265 32 1 -0.4850 0.8401 0.0004 33 1 -0.5801 -2.0213 0.8463 34 1 -0.5634 -2.1705 -0.9322 35 1 -1.2854 -4.2564 0.7826 36 1 -0.5949 -4.5239 -0.8529 37 1 1.1326 -6.2170 -0.6089 38 1 0.5008 -6.6931 0.9937 39 1 5.1459 -7.4424 0.4009 40 1 7.4075 -7.7378 1.3109 41 1 7.7671 -7.9346 3.7266 42 1 2.4388 -7.4434 4.7773 43 1 4.5399 -5.5676 1.1317 44 1 3.8959 -5.5634 -0.5247 45 1 3.1575 -3.6510 1.7432 46 1 3.9907 -3.2497 0.2165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036786768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 95.389649 kcal Electronic energy + Delta-G solvation = -29895.729738 eV Core-core repulsion = 25980.672461 eV Total energy + Delta-G solvation = -3915.057277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80760 -40.21475 -38.34100 -37.13769 -35.38244 -33.04276 -32.52589 -31.57491 -30.45020 -30.08798 -29.26677 -27.97687 -25.24627 -24.37025 -23.06859 -22.75028 -22.34805 -21.80454 -20.25864 -19.97575 -19.31805 -17.83180 -17.34782 -16.65222 -16.21449 -15.79926 -15.51569 -15.30044 -15.03048 -14.98096 -14.57172 -14.33887 -13.91445 -13.86103 -13.70450 -13.06011 -13.00270 -12.74603 -12.47409 -12.21929 -12.01252 -11.93121 -11.64338 -11.46984 -11.40386 -11.18978 -10.85710 -10.81139 -10.73567 -10.58617 -10.15810 -10.07511 -9.91902 -9.72931 -9.63779 -9.46826 -8.96663 -8.63588 -8.54627 -8.28258 -6.84396 -5.72467 -3.05592 0.35872 1.11897 2.26898 2.41713 2.63200 2.98274 3.38492 3.43626 3.46387 3.49108 4.18021 4.41135 4.47954 4.54770 4.65020 4.71426 4.93427 5.03822 5.07610 5.21973 5.33946 5.36654 5.38876 5.53265 5.54892 5.56634 5.61895 5.80139 5.87732 5.94013 6.01639 6.05370 6.09284 6.15228 6.18212 6.22728 6.34365 6.41119 6.47972 6.61047 6.64453 6.82083 6.97172 7.06461 7.28965 7.41724 7.55064 7.61167 7.80824 8.12698 8.23640 9.18522 9.82262 10.50175 11.40071 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.003137 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.027830 B = 8924.054244 C = 9592.737615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.176 3.824 11 C -0.137 4.137 12 C -0.123 4.123 13 H 0.081 0.919 14 C 0.126 3.874 15 N -0.596 5.596 16 C 0.555 3.445 17 O -0.537 6.537 18 C -0.038 4.038 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.128 4.128 22 C 0.125 3.875 23 N -0.508 5.508 24 H 0.442 0.558 25 N -0.248 5.248 26 C 0.087 3.913 27 C -0.139 4.139 28 C 0.102 3.898 29 C -0.129 4.129 30 C 0.167 3.833 31 H 0.021 0.979 32 H 0.251 0.749 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.195 0.805 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -16.858 4.191 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.100 0.900 14 C 0.004 3.996 15 N -0.328 5.328 16 C 0.342 3.658 17 O -0.415 6.415 18 C -0.044 4.044 19 C -0.147 4.147 20 C -0.092 4.092 21 C -0.150 4.150 22 C 0.008 3.992 23 N -0.223 5.223 24 H 0.287 0.713 25 N -0.063 5.063 26 C -0.109 4.109 27 C -0.148 4.148 28 C -0.021 4.021 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.212 0.788 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.878 -17.067 5.640 21.545 hybrid contribution 0.934 1.067 -0.544 1.519 sum 12.812 -16.000 5.097 21.122 Atomic orbital electron populations 1.69947 1.04884 1.24900 1.57096 1.24786 0.95665 0.97613 1.02366 0.86094 0.78712 0.84021 0.77234 1.20541 1.21796 1.21827 1.19036 0.90373 0.82326 1.43594 0.90340 1.44232 1.01667 0.99492 1.86598 1.21533 0.83904 0.88354 1.00998 1.22658 0.95843 0.99740 0.99301 1.22699 0.97848 0.93116 1.00721 0.90039 1.21796 0.81250 0.97194 0.99316 1.48271 1.10155 1.27792 1.46546 1.18266 0.87580 0.81334 0.78605 1.90794 1.46810 1.43684 1.60191 1.19404 0.93724 0.99662 0.91647 1.21147 0.91416 1.02226 0.99901 1.20905 0.97084 0.97001 0.94174 1.20181 0.96649 1.05807 0.92359 1.18791 0.95419 0.99869 0.85161 1.46092 1.06688 1.65679 1.03874 0.71325 1.76790 0.87356 1.18389 1.23737 1.23978 1.00724 0.98161 0.88011 1.18620 0.92635 1.10316 0.93184 1.22077 0.89275 0.90585 1.00191 1.21879 0.99403 0.93439 1.02069 1.20661 0.91134 0.87264 0.95085 0.96191 0.93820 0.92765 0.94364 0.92055 0.92191 0.91034 0.89097 0.84610 0.84428 0.85235 0.78815 0.89431 0.91424 0.91398 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.43 55.49 0.58 -26.09 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.02 9.88 -15.06 -0.15 -6.17 16 8 H 0.08 2.01 7.23 -52.49 -0.38 1.63 16 9 N -0.60 -14.53 3.34 -163.10 -0.55 -15.07 16 10 C 0.18 4.17 5.44 -1.92 -0.01 4.16 16 11 C -0.14 -2.47 6.51 -25.30 -0.16 -2.63 16 12 C -0.12 -2.13 2.86 -89.30 -0.26 -2.39 16 13 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16 14 C 0.13 1.85 5.94 -3.53 -0.02 1.83 16 15 N -0.60 -8.31 2.99 -173.47 -0.52 -8.83 16 16 C 0.55 8.06 7.04 -12.50 -0.09 7.97 16 17 O -0.54 -9.26 16.44 5.27 0.09 -9.18 16 18 C -0.04 -0.48 4.83 -104.68 -0.51 -0.98 16 19 C -0.13 -1.20 7.43 -39.20 -0.29 -1.49 16 20 C -0.07 -0.53 9.99 -39.63 -0.40 -0.93 16 21 C -0.13 -1.02 10.06 -39.37 -0.40 -1.41 16 22 C 0.12 1.32 7.32 -84.17 -0.62 0.71 16 23 N -0.51 -5.08 7.45 32.35 0.24 -4.84 16 24 H 0.44 2.86 8.96 -182.66 -1.64 1.23 16 25 N -0.25 -3.12 12.58 30.81 0.39 -2.73 16 26 C 0.09 1.13 11.83 -17.10 -0.20 0.92 16 27 C -0.14 -1.77 6.00 -106.68 -0.64 -2.41 16 28 C 0.10 1.28 5.24 -3.49 -0.02 1.27 16 29 C -0.13 -2.10 5.47 -26.98 -0.15 -2.25 16 30 C 0.17 3.21 2.58 -67.98 -0.18 3.03 16 31 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 34 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 35 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.09 1.36 7.02 -51.93 -0.36 1.00 16 39 H 0.14 1.08 7.31 -52.49 -0.38 0.69 16 40 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 41 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.20 2.34 8.06 -52.48 -0.42 1.92 16 43 H 0.09 0.97 4.84 -51.93 -0.25 0.72 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 46 H 0.08 1.26 7.65 -51.93 -0.40 0.86 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -33.14 365.17 -11.00 -44.14 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.54 Total: 1.49 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.17 Total: -1.09 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.14 Total: -57.57 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.14 -11.00 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.534 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds