Wall clock time and date at job start Sat Apr 11 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48501 * 109.46832 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47093 * 299.99742 * 3 2 1 6 6 H 1.48499 * 109.46874 * 60.00011 * 3 2 1 7 7 C 1.38809 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99385 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00716 * 0.02562 * 7 2 1 10 10 C 1.48161 * 126.40446 * 359.97168 * 9 7 2 11 11 C 1.55282 * 107.04611 * 175.08167 * 10 9 7 12 12 C 1.53745 * 101.84267 * 337.52249 * 11 10 9 13 13 H 1.08997 * 111.30065 * 280.16002 * 12 11 10 14 14 C 1.52235 * 114.75094 * 152.76518 * 12 11 10 15 15 N 1.47721 * 106.35884 * 190.39636 * 14 12 11 16 16 C 1.34776 * 119.68328 * 232.05595 * 15 14 12 17 17 O 1.21603 * 120.00256 * 5.82318 * 16 15 14 18 18 C 1.47472 * 119.99888 * 185.82743 * 16 15 14 19 19 C 1.39000 * 120.29554 * 53.76817 * 18 16 15 20 20 C 1.38502 * 120.36597 * 179.70903 * 19 18 16 21 21 C 1.37831 * 120.78828 * 0.24362 * 20 19 18 22 22 C 1.39206 * 120.19671 * 0.02562 * 21 20 19 23 23 N 1.37224 * 133.64711 * 179.97438 * 22 21 20 24 24 H 0.97004 * 125.97818 * 359.97438 * 23 22 21 25 25 N 1.40020 * 108.03600 * 180.02562 * 23 22 21 26 26 C 1.30265 * 109.70308 * 0.02562 * 25 23 22 27 27 C 1.40674 * 119.79519 * 0.02562 * 22 21 20 28 28 C 1.46591 * 120.62678 * 52.32823 * 15 14 12 29 29 C 1.54370 * 110.35363 * 311.82163 * 28 15 14 30 30 C 1.45471 * 126.40789 * 179.97438 * 9 7 2 31 31 H 1.09000 * 109.27663 * 93.78312 * 30 9 7 32 32 H 0.97003 * 120.00285 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.91893 * 55.73057 * 10 9 7 34 34 H 1.09000 * 110.08635 * 294.52453 * 10 9 7 35 35 H 1.09006 * 110.95498 * 219.38680 * 11 10 9 36 36 H 1.08995 * 110.95589 * 95.66063 * 11 10 9 37 37 H 1.09005 * 110.07406 * 71.17984 * 14 12 11 38 38 H 1.09007 * 110.07131 * 309.60616 * 14 12 11 39 39 H 1.08002 * 119.81742 * 359.95421 * 19 18 16 40 40 H 1.08003 * 119.60528 * 180.22667 * 20 19 18 41 41 H 1.07999 * 119.89721 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.64492 * 180.02562 * 26 25 23 43 43 H 1.09003 * 109.25744 * 72.19351 * 28 15 14 44 44 H 1.09004 * 109.25354 * 191.62344 * 28 15 14 45 45 H 1.08990 * 110.04634 * 291.82213 * 29 28 15 46 46 H 1.09004 * 109.80217 * 170.68531 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5534 0.0006 11 6 -0.4341 -4.0741 -0.1267 12 6 0.8683 -4.5893 -0.7608 13 1 0.8850 -4.4064 -1.8352 14 6 1.2009 -6.0407 -0.4439 15 7 2.5822 -6.2639 -0.9173 16 6 2.8483 -7.3029 -1.7335 17 8 1.9395 -7.9879 -2.1619 18 6 4.2417 -7.6092 -2.1070 19 6 5.2072 -7.7921 -1.1239 20 6 6.5149 -8.0857 -1.4728 21 6 6.8841 -8.1968 -2.7961 22 6 5.9412 -8.0135 -3.8038 23 7 5.9989 -8.0571 -5.1741 24 1 6.7891 -8.2414 -5.7057 25 7 4.7177 -7.7878 -5.6707 26 6 3.8964 -7.5851 -4.6801 27 6 4.6085 -7.7137 -3.4679 28 6 3.6674 -5.3696 -0.5030 29 6 3.2475 -3.8954 -0.6857 30 6 1.9078 -3.7212 0.0005 31 1 1.9897 -4.0781 1.0272 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5802 -2.0214 -0.8463 34 1 -0.5662 -2.1729 0.9320 35 1 -1.2856 -4.2564 -0.7824 36 1 -0.5951 -4.5237 0.8530 37 1 0.5138 -6.7050 -0.9681 38 1 1.1415 -6.2120 0.6310 39 1 4.9352 -7.7087 -0.0820 40 1 7.2544 -8.2290 -0.6988 41 1 7.9078 -8.4266 -3.0520 42 1 2.8446 -7.3571 -4.7711 43 1 3.9034 -5.5524 0.5453 44 1 4.5503 -5.5706 -1.1099 45 1 3.1538 -3.6623 -1.7462 46 1 3.9877 -3.2409 -0.2253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036786769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:48 Heat of formation + Delta-G solvation = 93.205617 kcal Electronic energy + Delta-G solvation = -29843.906479 eV Core-core repulsion = 25928.754495 eV Total energy + Delta-G solvation = -3915.151984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80676 -40.19859 -38.32457 -37.12433 -35.36853 -33.04139 -32.52427 -31.56038 -30.45734 -30.07285 -29.25960 -28.00984 -25.21373 -24.37590 -23.07610 -22.72324 -22.37521 -21.81123 -20.25994 -19.96701 -19.32889 -17.81953 -17.33257 -16.66773 -16.23328 -15.80012 -15.47949 -15.31990 -15.04464 -14.99242 -14.58437 -14.30599 -13.91935 -13.82566 -13.66438 -13.10671 -13.02386 -12.72632 -12.45745 -12.22148 -12.03658 -11.93281 -11.64655 -11.47806 -11.40517 -11.19539 -10.85382 -10.80886 -10.72536 -10.59712 -10.15523 -10.08195 -9.90243 -9.73906 -9.63775 -9.46921 -8.97415 -8.63327 -8.54780 -8.30169 -6.84233 -5.72337 -3.05474 0.34989 1.11819 2.26143 2.41173 2.63062 2.97900 3.38720 3.43873 3.46604 3.48424 4.17577 4.40704 4.48053 4.55154 4.64477 4.71882 4.93001 5.03104 5.07926 5.22238 5.33668 5.36058 5.38550 5.53424 5.54828 5.57512 5.62249 5.80161 5.88032 5.93615 6.01447 6.05596 6.08892 6.15234 6.18200 6.23470 6.34859 6.41047 6.49214 6.61756 6.64174 6.82346 6.96458 7.06483 7.28337 7.41796 7.55276 7.61345 7.81041 8.12542 8.23748 9.18713 9.82383 10.50381 11.40219 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003067 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.023633 B = 9125.781156 C = 9777.970508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.125 3.875 15 N -0.597 5.597 16 C 0.555 3.445 17 O -0.536 6.536 18 C -0.039 4.039 19 C -0.125 4.125 20 C -0.070 4.070 21 C -0.128 4.128 22 C 0.125 3.875 23 N -0.508 5.508 24 H 0.442 0.558 25 N -0.248 5.248 26 C 0.087 3.913 27 C -0.140 4.140 28 C 0.108 3.892 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.020 0.980 32 H 0.251 0.749 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.195 0.805 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.606 -17.630 -3.061 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.004 3.996 15 N -0.329 5.329 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.045 4.045 19 C -0.145 4.145 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.007 3.993 23 N -0.223 5.223 24 H 0.287 0.713 25 N -0.063 5.063 26 C -0.109 4.109 27 C -0.148 4.148 28 C -0.015 4.015 29 C -0.168 4.168 30 C 0.060 3.940 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.212 0.788 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.182 -17.768 -4.581 22.025 hybrid contribution 0.867 0.984 0.595 1.441 sum 13.050 -16.784 -3.986 21.631 Atomic orbital electron populations 1.69951 1.04879 1.24906 1.57088 1.24790 0.95672 0.97620 1.02363 0.86089 0.78708 0.84002 0.77233 1.20542 1.21820 1.21797 1.19034 0.90371 0.82310 1.43600 0.90339 1.44210 1.01670 0.99473 1.86561 1.21520 0.83911 0.88317 1.00973 1.22716 0.95789 0.99657 0.99318 1.22628 0.97855 0.93206 1.00706 0.90168 1.21684 0.81337 0.97391 0.99192 1.48265 1.10129 1.27083 1.47430 1.18280 0.88125 0.80834 0.78498 1.90793 1.46306 1.50330 1.53935 1.19413 0.93597 0.99679 0.91774 1.21120 0.92330 1.01960 0.99064 1.20904 0.95998 0.96954 0.95280 1.20180 0.98238 1.05597 0.91007 1.18793 0.95338 0.99743 0.85385 1.46098 1.09550 1.63865 1.02834 0.71330 1.76793 0.88904 1.17330 1.23244 1.23981 1.00339 0.98265 0.88294 1.18639 0.93112 1.09788 0.93302 1.22023 0.88992 0.90348 1.00168 1.21967 0.99430 0.93370 1.02059 1.20626 0.91082 0.87213 0.95100 0.96263 0.93818 0.92761 0.94375 0.92029 0.92321 0.89035 0.91089 0.84696 0.84458 0.85250 0.78814 0.91466 0.89902 0.91392 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.44 55.49 0.58 -26.11 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.02 9.88 -15.06 -0.15 -6.17 16 8 H 0.08 2.02 7.21 -52.48 -0.38 1.64 16 9 N -0.59 -14.53 3.35 -163.10 -0.55 -15.08 16 10 C 0.18 4.19 5.45 -1.92 -0.01 4.18 16 11 C -0.14 -2.46 6.54 -25.13 -0.16 -2.63 16 12 C -0.12 -2.14 2.85 -89.37 -0.26 -2.39 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 14 C 0.13 1.84 5.97 -3.76 -0.02 1.81 16 15 N -0.60 -8.30 2.99 -173.48 -0.52 -8.82 16 16 C 0.56 8.04 7.01 -12.50 -0.09 7.95 16 17 O -0.54 -9.27 16.43 5.28 0.09 -9.18 16 18 C -0.04 -0.47 4.54 -104.68 -0.48 -0.95 16 19 C -0.12 -1.17 7.81 -39.20 -0.31 -1.48 16 20 C -0.07 -0.52 10.00 -39.63 -0.40 -0.92 16 21 C -0.13 -1.00 10.06 -39.37 -0.40 -1.40 16 22 C 0.12 1.30 7.32 -84.17 -0.62 0.69 16 23 N -0.51 -5.03 7.45 32.35 0.24 -4.79 16 24 H 0.44 2.82 8.96 -182.65 -1.64 1.18 16 25 N -0.25 -3.10 12.58 30.81 0.39 -2.71 16 26 C 0.09 1.12 11.83 -17.10 -0.20 0.92 16 27 C -0.14 -1.76 6.00 -106.68 -0.64 -2.40 16 28 C 0.11 1.37 5.31 -3.27 -0.02 1.35 16 29 C -0.13 -2.12 5.50 -26.76 -0.15 -2.27 16 30 C 0.17 3.24 2.57 -67.98 -0.17 3.06 16 31 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 34 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.09 1.37 6.98 -51.93 -0.36 1.01 16 38 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 39 H 0.14 1.07 7.70 -52.49 -0.40 0.67 16 40 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.94 5.50 -51.93 -0.29 0.66 16 45 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 46 H 0.08 1.27 7.62 -51.93 -0.40 0.88 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.10 366.32 -11.02 -44.12 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.59 Total: 1.28 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.16 Total: -0.96 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.14 Total: -57.51 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.10 -11.02 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.328 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds