Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48505 * 109.47358 * 239.99902 * 3 2 1 5 5 H 1.48501 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47386 * 119.99576 * 3 2 1 7 7 C 1.38812 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00236 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99728 * 0.02562 * 7 2 1 10 10 C 1.47505 * 125.59595 * 359.92196 * 9 7 2 11 11 C 1.55274 * 105.09171 * 200.44204 * 10 9 7 12 12 C 1.54378 * 100.53508 * 323.72054 * 11 10 9 13 13 H 1.08993 * 107.18497 * 285.72567 * 12 11 10 14 14 C 1.49492 * 113.32798 * 167.19622 * 12 11 10 15 15 N 1.45565 * 114.73322 * 266.29325 * 14 12 11 16 16 C 1.34775 * 120.19140 * 142.72675 * 15 14 12 17 17 O 1.21600 * 120.00053 * 354.22566 * 16 15 14 18 18 C 1.47465 * 119.99908 * 174.22232 * 16 15 14 19 19 C 1.39000 * 120.29686 * 306.02879 * 18 16 15 20 20 C 1.38513 * 120.36862 * 180.02562 * 19 18 16 21 21 C 1.37823 * 120.78866 * 359.97438 * 20 19 18 22 22 C 1.39219 * 120.19589 * 0.02562 * 21 20 19 23 23 N 1.37223 * 133.64679 * 179.97438 * 22 21 20 24 24 H 0.97006 * 125.98126 * 359.97438 * 23 22 21 25 25 N 1.40025 * 108.03383 * 180.02562 * 23 22 21 26 26 C 1.30264 * 109.70373 * 0.02562 * 25 23 22 27 27 C 1.40678 * 119.79159 * 359.74479 * 22 21 20 28 28 C 1.46775 * 119.61517 * 322.70413 * 15 14 12 29 29 C 1.52963 * 107.44123 * 54.26642 * 28 15 14 30 30 C 1.48276 * 125.61331 * 179.97438 * 9 7 2 31 31 H 1.09001 * 111.20055 * 304.42536 * 30 9 7 32 32 H 0.96999 * 119.99795 * 0.02562 * 1 2 3 33 33 H 1.08996 * 110.29744 * 81.55183 * 10 9 7 34 34 H 1.09005 * 110.35270 * 319.35615 * 10 9 7 35 35 H 1.09004 * 111.20486 * 205.88865 * 11 10 9 36 36 H 1.08998 * 111.20646 * 81.55851 * 11 10 9 37 37 H 1.08997 * 108.43561 * 27.65713 * 14 12 11 38 38 H 1.09001 * 108.42628 * 144.93396 * 14 12 11 39 39 H 1.08003 * 119.81946 * 0.02562 * 19 18 16 40 40 H 1.07993 * 119.60286 * 180.02562 * 20 19 18 41 41 H 1.07994 * 119.90192 * 179.97438 * 21 20 19 42 42 H 1.08006 * 125.64950 * 179.97438 * 26 25 23 43 43 H 1.09006 * 109.86409 * 173.75022 * 28 15 14 44 44 H 1.09005 * 109.86553 * 294.78154 * 28 15 14 45 45 H 1.09006 * 109.38882 * 58.90824 * 29 28 15 46 46 H 1.08997 * 109.39695 * 178.61922 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1425 -2.5318 0.0016 11 6 -0.4075 -3.9695 0.5248 12 6 0.7791 -4.7246 -0.1116 13 1 0.5588 -4.8343 -1.1734 14 6 0.9795 -6.0948 0.4518 15 7 1.9355 -6.1691 1.5470 16 6 1.7163 -7.0034 2.5826 17 8 0.6699 -7.6184 2.6569 18 6 2.7454 -7.1705 3.6254 19 6 4.0448 -7.5214 3.2784 20 6 5.0126 -7.6793 4.2567 21 6 4.7074 -7.4918 5.5876 22 6 3.4149 -7.1400 5.9668 23 7 2.8175 -6.8908 7.1768 24 1 3.2505 -6.9259 8.0442 25 7 1.4732 -6.5782 6.9404 26 6 1.2296 -6.6257 5.6617 27 6 2.4205 -6.9706 4.9863 28 6 3.1397 -5.3305 1.5169 29 6 2.6852 -3.8822 1.3282 30 6 1.9377 -3.7385 0.0005 31 1 2.6237 -3.8603 -0.8377 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5342 -2.4187 -1.0092 34 1 -0.5949 -1.7973 0.6680 35 1 -1.3603 -4.3526 0.1594 36 1 -0.3614 -4.0078 1.6131 37 1 0.0182 -6.4651 0.8078 38 1 1.3216 -6.7500 -0.3493 39 1 4.3015 -7.6718 2.2401 40 1 6.0184 -7.9517 3.9732 41 1 5.4730 -7.6191 6.3386 42 1 0.2756 -6.4295 5.1949 43 1 3.6831 -5.4287 2.4567 44 1 3.7785 -5.6295 0.6858 45 1 2.0244 -3.6006 2.1481 46 1 3.5562 -3.2269 1.3258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036786770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 95.052327 kcal Electronic energy + Delta-G solvation = -30071.508030 eV Core-core repulsion = 26156.436126 eV Total energy + Delta-G solvation = -3915.071904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76602 -40.20530 -38.28144 -37.09302 -35.32699 -33.06436 -32.53024 -31.57005 -30.37738 -30.01422 -29.22790 -28.05936 -25.37719 -24.32582 -23.09466 -22.79989 -22.56163 -21.79549 -20.29800 -20.18817 -18.30523 -17.76347 -17.29340 -16.88006 -16.53113 -15.71446 -15.51638 -15.23119 -15.01312 -14.92403 -14.69522 -14.27144 -13.84699 -13.79824 -13.63828 -13.10222 -12.98498 -12.59543 -12.25409 -12.22905 -12.03713 -11.88296 -11.67684 -11.47286 -11.28258 -11.14889 -11.01333 -10.84333 -10.74814 -10.54881 -10.14841 -10.04458 -9.77180 -9.74872 -9.56422 -9.50256 -8.93533 -8.65881 -8.44689 -8.25231 -6.84688 -5.65782 -3.05524 0.39103 1.15400 2.30908 2.45393 2.66089 3.04139 3.39620 3.43946 3.45525 3.52747 4.22245 4.44686 4.47256 4.58846 4.68375 4.75197 4.96650 5.06025 5.13891 5.28461 5.33998 5.41162 5.42523 5.43947 5.54792 5.58753 5.66327 5.88338 5.93230 5.97887 6.00203 6.07627 6.08838 6.14782 6.28239 6.32853 6.41725 6.45164 6.59225 6.63902 6.78419 6.89871 7.00764 7.09185 7.32942 7.46781 7.54085 7.63293 7.86561 8.17061 8.33174 9.21589 9.82302 10.48215 11.39668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.003286 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.522934 B = 8519.920455 C = 9064.661608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.160 3.840 11 C -0.138 4.138 12 C -0.109 4.109 13 H 0.072 0.928 14 C 0.132 3.868 15 N -0.589 5.589 16 C 0.556 3.444 17 O -0.536 6.536 18 C -0.036 4.036 19 C -0.125 4.125 20 C -0.071 4.071 21 C -0.128 4.128 22 C 0.125 3.875 23 N -0.508 5.508 24 H 0.442 0.558 25 N -0.248 5.248 26 C 0.088 3.912 27 C -0.139 4.139 28 C 0.101 3.899 29 C -0.139 4.139 30 C 0.172 3.828 31 H 0.041 0.959 32 H 0.252 0.748 33 H 0.014 0.986 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.195 0.805 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -16.793 8.446 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.035 3.965 11 C -0.177 4.177 12 C -0.129 4.129 13 H 0.091 0.909 14 C 0.009 3.991 15 N -0.321 5.321 16 C 0.344 3.656 17 O -0.414 6.414 18 C -0.042 4.042 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.150 4.150 22 C 0.008 3.992 23 N -0.223 5.223 24 H 0.287 0.713 25 N -0.062 5.062 26 C -0.108 4.108 27 C -0.148 4.148 28 C -0.022 4.022 29 C -0.179 4.179 30 C 0.064 3.936 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.212 0.788 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.454 -16.604 9.625 20.971 hybrid contribution 1.131 0.844 -0.424 1.474 sum 9.585 -15.759 9.201 20.613 Atomic orbital electron populations 1.69858 1.04863 1.24884 1.57346 1.24768 0.95671 0.97588 1.02496 0.86210 0.78441 0.83349 0.77820 1.21270 1.21637 1.21241 1.18970 0.90384 0.82401 1.43271 0.90625 1.44909 1.01642 0.99228 1.86707 1.21821 0.84455 0.91417 0.98782 1.23021 0.95706 0.99114 0.99850 1.21169 0.98119 0.93169 1.00438 0.90943 1.20410 0.93770 0.96874 0.87999 1.47659 1.23345 1.40008 1.21074 1.18214 0.86404 0.79891 0.81099 1.90793 1.26162 1.47599 1.76814 1.19367 0.93942 0.99522 0.91398 1.21101 0.91118 1.02010 1.00313 1.20892 0.99486 0.97354 0.91456 1.20173 0.92943 1.04906 0.97014 1.18794 0.94607 0.99405 0.86431 1.46099 1.06971 1.62419 1.06855 0.71341 1.76797 0.93856 1.17673 1.17911 1.23990 0.99135 0.97899 0.89780 1.18638 0.93984 1.09506 0.92665 1.22001 0.86221 0.91699 1.02317 1.22421 1.01398 0.93059 1.01034 1.20625 0.92478 0.86250 0.94216 0.94152 0.93744 0.96758 0.88743 0.92189 0.92314 0.89475 0.92584 0.84728 0.84496 0.85270 0.78799 0.89808 0.91252 0.91390 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.16 55.49 0.56 -26.05 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.94 9.91 -15.06 -0.15 -6.09 16 8 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.60 -14.62 3.05 -162.34 -0.50 -15.11 16 10 C 0.16 3.82 5.73 -2.29 -0.01 3.81 16 11 C -0.14 -2.62 6.43 -24.80 -0.16 -2.78 16 12 C -0.11 -1.84 2.50 -91.86 -0.23 -2.07 16 13 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 14 C 0.13 1.93 5.92 -6.28 -0.04 1.89 16 15 N -0.59 -8.34 3.00 -177.56 -0.53 -8.87 16 16 C 0.56 8.27 7.01 -12.50 -0.09 8.18 16 17 O -0.54 -9.46 16.48 5.28 0.09 -9.37 16 18 C -0.04 -0.46 4.62 -104.68 -0.48 -0.94 16 19 C -0.13 -1.21 7.73 -39.20 -0.30 -1.51 16 20 C -0.07 -0.55 10.00 -39.63 -0.40 -0.94 16 21 C -0.13 -1.05 10.06 -39.37 -0.40 -1.45 16 22 C 0.12 1.37 7.32 -84.17 -0.62 0.75 16 23 N -0.51 -5.29 7.45 32.35 0.24 -5.05 16 24 H 0.44 3.03 8.96 -182.65 -1.64 1.39 16 25 N -0.25 -3.25 12.58 30.81 0.39 -2.86 16 26 C 0.09 1.19 11.83 -17.10 -0.20 0.99 16 27 C -0.14 -1.83 6.00 -106.68 -0.64 -2.48 16 28 C 0.10 1.30 5.55 -3.91 -0.02 1.28 16 29 C -0.14 -2.36 5.19 -26.73 -0.14 -2.50 16 30 C 0.17 3.28 3.40 -67.16 -0.23 3.06 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 2.57 6.13 -51.93 -0.32 2.25 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.35 6.76 -51.93 -0.35 1.00 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 1.08 7.73 -52.48 -0.41 0.68 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.20 2.49 8.06 -52.48 -0.42 2.07 16 43 H 0.08 0.99 5.34 -51.93 -0.28 0.71 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.83 366.76 -11.05 -43.88 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.61 Total: 2.33 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -4.20 Total: -1.17 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.16 Total: -57.95 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.83 -11.05 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036786770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.930 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds